Wall clock time and date at job start Tue Mar 31 2020 02:06:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46496 * 109.47238 * 2 1 4 4 C 1.36942 * 120.00195 * 96.37001 * 3 2 1 5 5 H 1.07999 * 119.99741 * 174.79026 * 4 3 2 6 6 C 1.38810 * 119.99818 * 354.79217 * 4 3 2 7 7 N 1.31624 * 119.99857 * 325.85470 * 6 4 3 8 8 Si 1.86801 * 120.00008 * 145.85191 * 6 4 3 9 9 H 1.48502 * 109.46983 * 94.98524 * 8 6 4 10 10 H 1.48502 * 109.46971 * 214.98150 * 8 6 4 11 11 H 1.48493 * 109.46997 * 334.98415 * 8 6 4 12 12 C 1.46505 * 120.00255 * 276.37591 * 3 2 1 13 13 C 1.50704 * 109.46792 * 265.49563 * 12 3 2 14 14 C 1.38164 * 120.02782 * 259.27131 * 13 12 3 15 15 C 1.38243 * 120.05171 * 179.79578 * 14 13 12 16 16 N 1.48012 * 119.93772 * 180.21193 * 15 14 13 17 17 O 1.21799 * 119.99256 * 180.25311 * 16 15 14 18 18 O 1.21793 * 120.00514 * 0.24691 * 16 15 14 19 19 C 1.38285 * 120.11517 * 0.45817 * 15 14 13 20 20 C 1.38126 * 120.05555 * 359.79546 * 19 15 14 21 21 C 1.38711 * 120.02526 * 79.55085 * 13 12 3 22 22 O 1.35897 * 120.05740 * 359.97438 * 21 13 12 23 23 C 1.42902 * 116.99882 * 180.02562 * 22 21 13 24 24 H 1.08998 * 109.47153 * 188.18665 * 1 2 3 25 25 H 1.09001 * 109.46969 * 308.18307 * 1 2 3 26 26 H 1.08998 * 109.47166 * 68.18466 * 1 2 3 27 27 H 1.09003 * 109.47062 * 240.00136 * 2 1 3 28 28 H 1.09001 * 109.46995 * 119.99771 * 2 1 3 29 29 H 0.97003 * 119.99636 * 180.02562 * 7 6 4 30 30 H 1.09001 * 109.46934 * 25.49478 * 12 3 2 31 31 H 1.08994 * 109.47107 * 145.49558 * 12 3 2 32 32 H 1.08002 * 119.96897 * 0.02562 * 14 13 12 33 33 H 1.07996 * 119.97327 * 179.76809 * 19 15 14 34 34 H 1.07991 * 120.02868 * 179.97438 * 20 19 15 35 35 H 1.09006 * 109.47412 * 300.00088 * 23 22 21 36 36 H 1.08999 * 109.47393 * 60.00289 * 23 22 21 37 37 H 1.09004 * 109.47456 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3707 1.9829 1.1786 5 1 2.8094 2.9698 1.1710 6 6 2.1640 1.3244 2.3830 7 7 1.1214 0.5347 2.5308 8 14 3.3657 1.5588 3.7939 9 1 2.8655 2.6255 4.6979 10 1 3.4938 0.2879 4.5512 11 1 4.6927 1.9494 3.2541 12 6 2.1298 2.1188 -1.2609 13 6 3.5332 1.9915 -1.7950 14 6 4.4349 3.0241 -1.6229 15 6 5.7236 2.9061 -2.1090 16 7 6.6888 4.0121 -1.9191 17 8 7.8232 3.9111 -2.3510 18 8 6.3488 5.0231 -1.3312 19 6 6.1110 1.7588 -2.7767 20 6 5.2119 0.7257 -2.9559 21 6 3.9191 0.8398 -2.4649 22 8 3.0326 -0.1752 -2.6399 23 6 3.4995 -1.3311 -3.3385 24 1 -0.3633 -1.0172 0.1463 25 1 -0.3633 0.6353 0.8078 26 1 -0.3633 0.3819 -0.9540 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 0.9768 0.0749 3.3725 30 1 1.4266 1.7081 -1.9854 31 1 1.9008 3.1703 -1.0881 32 1 4.1336 3.9227 -1.1050 33 1 7.1173 1.6706 -3.1587 34 1 5.5147 -0.1699 -3.4777 35 1 3.8193 -1.0455 -4.3407 36 1 4.3405 -1.7667 -2.7990 37 1 2.6946 -2.0628 -3.4092 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000045061201.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:06:31 Heat of formation + Delta-G solvation = 14.665179 kcal Electronic energy + Delta-G solvation = -22500.122837 eV Core-core repulsion = 19054.569942 eV Total energy + Delta-G solvation = -3445.552896 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -41.87415 -40.32201 -37.57861 -36.28514 -36.05508 -32.59357 -30.98378 -30.86522 -29.06715 -27.76005 -26.01150 -25.61241 -23.36276 -22.31352 -21.66775 -20.25163 -18.55580 -18.37458 -18.14314 -17.23207 -16.67463 -16.17445 -15.96189 -14.95856 -14.72522 -14.12130 -13.70961 -13.67006 -13.38277 -13.33938 -12.78097 -12.16879 -11.96974 -11.85598 -11.43538 -11.36982 -11.29069 -11.14239 -10.89162 -10.87825 -10.79490 -10.67083 -10.51757 -10.09633 -9.85261 -9.40862 -9.11389 -8.46624 -8.32927 -7.04632 -5.93407 -3.09565 0.18672 1.14703 1.67246 1.74692 3.12576 3.35526 3.46049 3.49507 3.53127 4.47694 4.49948 4.58360 4.83298 4.96468 5.03134 5.07922 5.22371 5.36721 5.43450 5.54197 5.66712 5.77203 5.88613 6.03430 6.26126 6.43746 6.52698 6.61796 6.70015 6.85932 6.99804 7.03450 7.21997 7.56756 7.70234 7.95600 7.98020 8.22331 9.12630 9.78048 10.23084 11.13203 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.013705 B = 0.007246 C = 0.005326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2042.526423 B = 3863.217264 C = 5255.683528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.160 3.840 3 N -0.583 5.583 4 C -0.267 4.267 5 H 0.075 0.925 6 C 0.013 3.987 7 N -0.876 5.876 8 Si 0.873 3.127 9 H -0.288 1.288 10 H -0.289 1.289 11 H -0.281 1.281 12 C 0.191 3.809 13 C -0.108 4.108 14 C -0.010 4.010 15 C -0.086 4.086 16 N 0.041 4.959 17 O -0.185 6.185 18 O -0.169 6.169 19 C -0.029 4.029 20 C -0.217 4.217 21 C 0.191 3.809 22 O -0.287 6.287 23 C 0.021 3.979 24 H 0.023 0.977 25 H 0.082 0.918 26 H 0.011 0.989 27 H 0.026 0.974 28 H 0.075 0.925 29 H 0.253 0.747 30 H 0.061 0.939 31 H 0.059 0.941 32 H 0.155 0.845 33 H 0.147 0.853 34 H 0.144 0.856 35 H 0.056 0.944 36 H 0.058 0.942 37 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.370 -3.419 -13.139 14.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.035 3.965 3 N -0.302 5.302 4 C -0.395 4.395 5 H 0.093 0.907 6 C -0.186 4.186 7 N -0.519 5.519 8 Si 0.701 3.299 9 H -0.215 1.215 10 H -0.215 1.215 11 H -0.206 1.206 12 C 0.063 3.937 13 C -0.113 4.113 14 C -0.031 4.031 15 C -0.170 4.170 16 N 0.556 4.444 17 O -0.396 6.396 18 O -0.385 6.385 19 C -0.048 4.048 20 C -0.236 4.236 21 C 0.143 3.857 22 O -0.198 6.198 23 C -0.074 4.074 24 H 0.043 0.957 25 H 0.101 0.899 26 H 0.030 0.970 27 H 0.044 0.956 28 H 0.094 0.906 29 H 0.063 0.937 30 H 0.079 0.921 31 H 0.078 0.922 32 H 0.172 0.828 33 H 0.165 0.835 34 H 0.161 0.839 35 H 0.074 0.926 36 H 0.077 0.923 37 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 3.605 -4.100 -12.991 14.091 hybrid contribution 1.250 0.110 0.858 1.520 sum 4.856 -3.990 -12.133 13.664 Atomic orbital electron populations 1.22168 0.99289 0.99453 0.99578 1.20882 0.92332 0.84383 0.98876 1.44170 1.74513 1.10853 1.00638 1.19142 1.35175 1.01580 0.83589 0.90680 1.24588 0.97311 0.99860 0.96859 1.70319 1.23361 1.33295 1.24910 0.86724 0.83173 0.77145 0.82809 1.21503 1.21548 1.20637 1.19610 0.87808 0.97309 0.88995 1.20740 1.02177 0.90493 0.97877 1.20764 0.88988 0.99693 0.93610 1.20984 0.91295 0.90543 1.14169 1.43583 1.01345 1.01774 0.97695 1.94470 1.05537 1.87243 1.52369 1.94527 1.83395 1.19553 1.40975 1.20587 1.00504 0.89931 0.93798 1.21128 0.93132 1.01045 1.08340 1.19237 0.87893 0.87944 0.90663 1.86306 1.37322 1.24920 1.71254 1.23173 1.02000 0.86574 0.95698 0.95750 0.89885 0.96961 0.95621 0.90630 0.93681 0.92072 0.92244 0.82779 0.83538 0.83853 0.92567 0.92324 0.87782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 39. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.18 9.66 37.16 0.36 -2.82 16 2 C 0.16 3.61 5.59 -4.04 -0.02 3.59 16 3 N -0.58 -13.45 2.53 -174.60 -0.44 -13.89 16 4 C -0.27 -6.94 9.62 -15.06 -0.14 -7.09 16 5 H 0.08 1.94 8.02 -52.49 -0.42 1.52 16 6 C 0.01 0.34 4.68 -17.43 -0.08 0.26 16 7 N -0.88 -23.86 9.32 55.49 0.52 -23.34 16 8 Si 0.87 21.29 29.67 -169.99 -5.04 16.25 16 9 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 10 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 11 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 12 C 0.19 3.62 5.49 -5.19 -0.03 3.60 16 13 C -0.11 -1.83 5.45 -104.47 -0.57 -2.40 16 14 C -0.01 -0.17 9.17 -39.61 -0.36 -0.53 16 15 C -0.09 -1.39 6.85 -79.93 -0.55 -1.94 16 16 N 0.04 0.72 4.45 33.97 0.15 0.87 16 17 O -0.18 -3.21 18.44 -29.46 -0.54 -3.76 16 18 O -0.17 -3.15 18.44 -29.46 -0.54 -3.69 16 19 C -0.03 -0.39 9.55 -39.61 -0.38 -0.77 16 20 C -0.22 -2.71 9.04 -39.43 -0.36 -3.07 16 21 C 0.19 2.86 6.66 -39.22 -0.26 2.60 16 22 O -0.29 -4.06 7.29 -19.42 -0.14 -4.21 16 23 C 0.02 0.19 9.81 101.05 0.99 1.18 16 24 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 25 H 0.08 2.09 6.72 -51.93 -0.35 1.74 16 26 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 16 27 H 0.03 0.52 5.50 -51.93 -0.29 0.24 16 28 H 0.08 1.94 5.92 -51.93 -0.31 1.64 16 29 H 0.25 6.75 8.31 -40.82 -0.34 6.41 16 30 H 0.06 1.09 7.76 -51.93 -0.40 0.69 16 31 H 0.06 1.10 7.93 -51.93 -0.41 0.69 16 32 H 0.15 2.56 7.58 -52.49 -0.40 2.17 16 33 H 0.15 1.67 7.61 -52.49 -0.40 1.27 16 34 H 0.14 1.30 6.30 -52.49 -0.33 0.97 16 35 H 0.06 0.40 7.66 -51.93 -0.40 0.00 16 36 H 0.06 0.50 7.66 -51.93 -0.40 0.10 16 37 H 0.10 0.79 8.14 -51.93 -0.42 0.36 16 LS Contribution 314.42 15.07 4.74 4.74 Total: -1.00 -29.48 314.42 -7.21 -36.70 By element: Atomic # 1 Polarization: 2.22 SS G_CDS: -4.50 Total: -2.28 kcal Atomic # 6 Polarization: -5.99 SS G_CDS: -1.40 Total: -7.39 kcal Atomic # 7 Polarization: -36.59 SS G_CDS: 0.23 Total: -36.36 kcal Atomic # 8 Polarization: -10.43 SS G_CDS: -1.23 Total: -11.66 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.04 Total: 16.25 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -29.48 -7.21 -36.70 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000045061201.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.360 kcal (2) G-P(sol) polarization free energy of solvation -29.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.695 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds