Wall clock time and date at job start Tue Mar 31 2020 02:06:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46496 * 109.47238 * 2 1 4 4 C 1.36942 * 120.00195 * 96.37001 * 3 2 1 5 5 H 1.07999 * 119.99741 * 174.79026 * 4 3 2 6 6 C 1.38810 * 119.99818 * 354.79217 * 4 3 2 7 7 N 1.31624 * 119.99857 * 325.85470 * 6 4 3 8 8 Si 1.86801 * 120.00008 * 145.85191 * 6 4 3 9 9 H 1.48502 * 109.46983 * 94.98524 * 8 6 4 10 10 H 1.48502 * 109.46971 * 214.98150 * 8 6 4 11 11 H 1.48493 * 109.46997 * 334.98415 * 8 6 4 12 12 C 1.46505 * 120.00255 * 276.37591 * 3 2 1 13 13 C 1.50704 * 109.46792 * 265.49563 * 12 3 2 14 14 C 1.38164 * 120.02782 * 259.27131 * 13 12 3 15 15 C 1.38243 * 120.05171 * 179.79578 * 14 13 12 16 16 N 1.48012 * 119.93772 * 180.21193 * 15 14 13 17 17 O 1.21799 * 119.99256 * 180.25311 * 16 15 14 18 18 O 1.21793 * 120.00514 * 0.24691 * 16 15 14 19 19 C 1.38285 * 120.11517 * 0.45817 * 15 14 13 20 20 C 1.38126 * 120.05555 * 359.79546 * 19 15 14 21 21 C 1.38711 * 120.02526 * 79.55085 * 13 12 3 22 22 O 1.35897 * 120.05740 * 359.97438 * 21 13 12 23 23 C 1.42902 * 116.99882 * 180.02562 * 22 21 13 24 24 H 1.08998 * 109.47153 * 188.18665 * 1 2 3 25 25 H 1.09001 * 109.46969 * 308.18307 * 1 2 3 26 26 H 1.08998 * 109.47166 * 68.18466 * 1 2 3 27 27 H 1.09003 * 109.47062 * 240.00136 * 2 1 3 28 28 H 1.09001 * 109.46995 * 119.99771 * 2 1 3 29 29 H 0.97003 * 119.99636 * 180.02562 * 7 6 4 30 30 H 1.09001 * 109.46934 * 25.49478 * 12 3 2 31 31 H 1.08994 * 109.47107 * 145.49558 * 12 3 2 32 32 H 1.08002 * 119.96897 * 0.02562 * 14 13 12 33 33 H 1.07996 * 119.97327 * 179.76809 * 19 15 14 34 34 H 1.07991 * 120.02868 * 179.97438 * 20 19 15 35 35 H 1.09006 * 109.47412 * 300.00088 * 23 22 21 36 36 H 1.08999 * 109.47393 * 60.00289 * 23 22 21 37 37 H 1.09004 * 109.47456 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3707 1.9829 1.1786 5 1 2.8094 2.9698 1.1710 6 6 2.1640 1.3244 2.3830 7 7 1.1214 0.5347 2.5308 8 14 3.3657 1.5588 3.7939 9 1 2.8655 2.6255 4.6979 10 1 3.4938 0.2879 4.5512 11 1 4.6927 1.9494 3.2541 12 6 2.1298 2.1188 -1.2609 13 6 3.5332 1.9915 -1.7950 14 6 4.4349 3.0241 -1.6229 15 6 5.7236 2.9061 -2.1090 16 7 6.6888 4.0121 -1.9191 17 8 7.8232 3.9111 -2.3510 18 8 6.3488 5.0231 -1.3312 19 6 6.1110 1.7588 -2.7767 20 6 5.2119 0.7257 -2.9559 21 6 3.9191 0.8398 -2.4649 22 8 3.0326 -0.1752 -2.6399 23 6 3.4995 -1.3311 -3.3385 24 1 -0.3633 -1.0172 0.1463 25 1 -0.3633 0.6353 0.8078 26 1 -0.3633 0.3819 -0.9540 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 0.9768 0.0749 3.3725 30 1 1.4266 1.7081 -1.9854 31 1 1.9008 3.1703 -1.0881 32 1 4.1336 3.9227 -1.1050 33 1 7.1173 1.6706 -3.1587 34 1 5.5147 -0.1699 -3.4777 35 1 3.8193 -1.0455 -4.3407 36 1 4.3405 -1.7667 -2.7990 37 1 2.6946 -2.0628 -3.4092 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000045061201.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:06:30 Heat of formation + Delta-G solvation = -0.759518 kcal Electronic energy + Delta-G solvation = -22500.791702 eV Core-core repulsion = 19054.569942 eV Total energy + Delta-G solvation = -3446.221761 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -43.19986 -41.45692 -38.70179 -37.79158 -37.61179 -34.14426 -32.62295 -32.13133 -30.73726 -28.64642 -27.64511 -26.80729 -25.14744 -23.54372 -23.01163 -21.91435 -19.89148 -19.72814 -19.18529 -18.57358 -18.45105 -17.41697 -17.10725 -16.58310 -15.89646 -15.55506 -15.45340 -15.09203 -14.76331 -14.40688 -14.02041 -13.73010 -13.58861 -13.18320 -13.03343 -12.74013 -12.67738 -12.56942 -12.48383 -12.27505 -12.25534 -12.24232 -12.02778 -11.91745 -11.71583 -11.20759 -10.34957 -10.25871 -9.63117 -8.90477 -7.92933 -5.08560 -1.10497 0.00134 0.40294 0.47940 1.39254 1.46389 1.54038 2.14659 2.30830 2.54187 3.16140 3.41751 3.51891 3.69986 3.79995 3.93626 4.23635 4.30121 4.40543 4.43829 4.65000 4.68750 4.75685 4.81863 4.83734 4.95088 4.97298 5.11969 5.26285 5.27852 5.29867 5.44150 5.62800 5.77410 6.12171 6.21419 6.28891 6.57966 7.17645 7.90932 8.31169 9.12002 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.013705 B = 0.007246 C = 0.005326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2042.526423 B = 3863.217264 C = 5255.683528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.166 3.834 3 N -0.597 5.597 4 C -0.264 4.264 5 H 0.067 0.933 6 C -0.031 4.031 7 N -0.896 5.896 8 Si 0.922 3.078 9 H -0.291 1.291 10 H -0.291 1.291 11 H -0.288 1.288 12 C 0.194 3.806 13 C -0.129 4.129 14 C -0.018 4.018 15 C -0.105 4.105 16 N 0.042 4.958 17 O -0.165 6.165 18 O -0.218 6.218 19 C -0.015 4.015 20 C -0.200 4.200 21 C 0.196 3.804 22 O -0.307 6.307 23 C 0.007 3.993 24 H 0.035 0.965 25 H 0.045 0.955 26 H 0.029 0.971 27 H 0.052 0.948 28 H 0.041 0.959 29 H 0.248 0.752 30 H 0.073 0.927 31 H 0.053 0.947 32 H 0.141 0.859 33 H 0.176 0.824 34 H 0.189 0.811 35 H 0.084 0.916 36 H 0.069 0.931 37 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.685 -5.286 -15.508 17.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.041 3.959 3 N -0.317 5.317 4 C -0.393 4.393 5 H 0.085 0.915 6 C -0.228 4.228 7 N -0.541 5.541 8 Si 0.751 3.249 9 H -0.218 1.218 10 H -0.217 1.217 11 H -0.214 1.214 12 C 0.067 3.933 13 C -0.134 4.134 14 C -0.038 4.038 15 C -0.189 4.189 16 N 0.554 4.446 17 O -0.384 6.384 18 O -0.422 6.422 19 C -0.034 4.034 20 C -0.219 4.219 21 C 0.147 3.853 22 O -0.219 6.219 23 C -0.086 4.086 24 H 0.054 0.946 25 H 0.065 0.935 26 H 0.048 0.952 27 H 0.070 0.930 28 H 0.060 0.940 29 H 0.057 0.943 30 H 0.091 0.909 31 H 0.071 0.929 32 H 0.159 0.841 33 H 0.193 0.807 34 H 0.206 0.794 35 H 0.102 0.898 36 H 0.088 0.912 37 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 4.882 -5.893 -15.349 17.150 hybrid contribution 0.883 0.590 1.379 1.740 sum 5.765 -5.302 -13.970 16.016 Atomic orbital electron populations 1.21995 0.98904 0.99417 0.98980 1.20774 0.92562 0.84170 0.98351 1.44287 1.75122 1.11166 1.01149 1.19287 1.33834 1.01303 0.84918 0.91548 1.25026 0.98424 1.00893 0.98429 1.70415 1.24203 1.34591 1.24922 0.85962 0.81346 0.76580 0.80985 1.21845 1.21727 1.21373 1.19616 0.89530 0.96522 0.87649 1.20367 1.00701 0.92062 1.00271 1.20674 0.89710 0.99564 0.93843 1.21115 0.90819 0.91073 1.15929 1.43793 1.01538 1.01971 0.97345 1.94426 1.05748 1.87001 1.51175 1.94539 1.83767 1.20729 1.43139 1.21019 1.01933 0.88577 0.91873 1.21538 0.91451 1.01948 1.06914 1.19319 0.88984 0.87354 0.89641 1.86253 1.38046 1.25840 1.71719 1.23583 1.03212 0.85073 0.96761 0.94590 0.93545 0.95189 0.93031 0.94018 0.94251 0.90896 0.92897 0.84115 0.80664 0.79377 0.89777 0.91215 0.86288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.75 9.66 71.98 0.70 -5.06 16 2 C 0.17 7.42 5.59 86.38 0.48 7.90 16 3 N -0.60 -27.60 2.53 -706.32 -1.78 -29.38 16 4 C -0.26 -13.99 9.62 84.03 0.81 -13.18 16 5 H 0.07 3.55 8.02 -2.91 -0.02 3.52 16 6 C -0.03 -1.68 4.68 84.86 0.40 -1.28 16 7 N -0.90 -49.90 9.32 21.65 0.20 -49.70 16 8 Si 0.92 44.82 29.67 68.60 2.04 46.85 16 9 H -0.29 -14.15 7.11 99.48 0.71 -13.44 16 10 H -0.29 -14.09 7.11 99.48 0.71 -13.39 16 11 H -0.29 -14.14 7.11 99.48 0.71 -13.43 16 12 C 0.19 7.28 5.49 85.63 0.47 7.75 16 13 C -0.13 -4.27 5.45 -19.77 -0.11 -4.38 16 14 C -0.02 -0.59 9.17 22.25 0.20 -0.39 16 15 C -0.10 -3.25 6.85 36.39 0.25 -3.01 16 16 N 0.04 1.46 4.45 -46.44 -0.21 1.25 16 17 O -0.16 -5.42 18.44 18.89 0.35 -5.07 16 18 O -0.22 -8.34 18.44 18.89 0.35 -7.99 16 19 C -0.01 -0.34 9.55 22.25 0.21 -0.13 16 20 C -0.20 -4.04 9.04 22.37 0.20 -3.84 16 21 C 0.20 5.26 6.66 22.51 0.15 5.41 16 22 O -0.31 -7.59 7.29 -92.39 -0.67 -8.27 16 23 C 0.01 0.10 9.81 113.37 1.11 1.21 16 24 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 25 H 0.05 2.35 6.72 -2.39 -0.02 2.33 16 26 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 27 H 0.05 2.01 5.50 -2.39 -0.01 1.99 16 28 H 0.04 2.15 5.92 -2.39 -0.01 2.14 16 29 H 0.25 13.54 8.31 -92.71 -0.77 12.77 16 30 H 0.07 2.52 7.76 -2.39 -0.02 2.50 16 31 H 0.05 2.01 7.93 -2.39 -0.02 1.99 16 32 H 0.14 4.95 7.58 -2.91 -0.02 4.93 16 33 H 0.18 3.09 7.61 -2.91 -0.02 3.07 16 34 H 0.19 2.12 6.30 -2.92 -0.02 2.10 16 35 H 0.08 0.69 7.66 -2.38 -0.02 0.67 16 36 H 0.07 0.81 7.66 -2.39 -0.02 0.79 16 37 H 0.12 1.27 8.14 -2.39 -0.02 1.25 16 Total: -1.00 -65.21 314.42 6.23 -58.97 By element: Atomic # 1 Polarization: 1.23 SS G_CDS: 1.09 Total: 2.32 kcal Atomic # 6 Polarization: -13.87 SS G_CDS: 4.88 Total: -8.99 kcal Atomic # 7 Polarization: -76.04 SS G_CDS: -1.79 Total: -77.82 kcal Atomic # 8 Polarization: -21.35 SS G_CDS: 0.02 Total: -21.33 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 2.04 Total: 46.85 kcal Total: -65.21 6.23 -58.97 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000045061201.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.215 kcal (2) G-P(sol) polarization free energy of solvation -65.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.975 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds