Wall clock time and date at job start Tue Mar 31 2020 02:09:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46500 * 109.47151 * 2 1 4 4 C 1.37096 * 119.99916 * 97.75147 * 3 2 1 5 5 H 1.07996 * 120.00177 * 163.90370 * 4 3 2 6 6 C 1.38951 * 119.99872 * 343.89832 * 4 3 2 7 7 N 1.31411 * 120.00002 * 350.89542 * 6 4 3 8 8 Si 1.86800 * 119.99652 * 170.88752 * 6 4 3 9 9 H 1.48495 * 109.47408 * 0.02562 * 8 6 4 10 10 H 1.48505 * 109.46832 * 120.00451 * 8 6 4 11 11 H 1.48507 * 109.47115 * 240.00165 * 8 6 4 12 12 C 1.34778 * 120.00155 * 277.75192 * 3 2 1 13 13 O 1.21298 * 119.99893 * 3.59331 * 12 3 2 14 14 C 1.50693 * 120.00140 * 183.31605 * 12 3 2 15 15 H 1.08996 * 109.47075 * 311.68589 * 14 12 3 16 16 C 1.53001 * 109.47131 * 71.68518 * 14 12 3 17 17 N 1.46501 * 109.47139 * 191.68569 * 14 12 3 18 18 C 1.34776 * 120.00132 * 155.00157 * 17 14 12 19 19 O 1.21620 * 119.99882 * 359.97438 * 18 17 14 20 20 C 1.47380 * 120.00462 * 179.97438 * 18 17 14 21 21 C 1.47015 * 127.19637 * 179.97438 * 20 18 17 22 22 C 1.34168 * 105.95652 * 179.97438 * 21 20 18 23 23 O 1.34214 * 109.12627 * 0.02562 * 22 21 20 24 24 C 1.33658 * 110.90375 * 359.75923 * 23 22 21 25 25 H 1.09003 * 109.46998 * 299.99759 * 1 2 3 26 26 H 1.09001 * 109.47611 * 59.99460 * 1 2 3 27 27 H 1.09001 * 109.47203 * 180.02562 * 1 2 3 28 28 H 1.09007 * 109.46745 * 240.00664 * 2 1 3 29 29 H 1.09001 * 109.47611 * 120.00540 * 2 1 3 30 30 H 0.97000 * 119.99480 * 179.97438 * 7 6 4 31 31 H 1.09001 * 109.47182 * 301.85408 * 16 14 12 32 32 H 1.09006 * 109.47109 * 61.85501 * 16 14 12 33 33 H 1.09000 * 109.47524 * 181.85477 * 16 14 12 34 34 H 0.96998 * 120.00486 * 335.00145 * 17 14 12 35 35 H 1.08007 * 127.02261 * 359.97438 * 21 20 18 36 36 H 1.08008 * 125.43970 * 179.97438 * 22 21 20 37 37 H 1.07998 * 125.79804 * 180.26831 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3978 1.9741 1.1765 5 1 2.9918 2.8759 1.1597 6 6 2.0181 1.4148 2.3904 7 7 1.1517 0.4271 2.4164 8 14 2.7394 2.0668 3.9854 9 1 3.6839 3.1728 3.6859 10 1 1.6453 2.5720 4.8533 11 1 3.4618 0.9741 4.6851 12 6 2.0945 2.0691 -1.1565 13 8 1.6980 1.5679 -2.1875 14 6 2.6666 3.4631 -1.1678 15 1 2.2096 4.0498 -0.3709 16 6 4.1792 3.3955 -0.9481 17 7 2.3886 4.0947 -2.4601 18 6 2.3324 5.4379 -2.5556 19 8 2.5120 6.1257 -1.5688 20 6 2.0533 6.0732 -3.8558 21 6 1.9562 7.5126 -4.1390 22 6 1.6904 7.6134 -5.4503 23 8 1.6181 6.3824 -5.9802 24 6 1.8360 5.4487 -5.0489 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 1.8933 -0.5138 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 0.8869 0.0364 3.2638 31 1 4.3870 2.8961 -0.0017 32 1 4.6401 2.8367 -1.7626 33 1 4.5884 4.4055 -0.9233 34 1 2.2450 3.5461 -3.2472 35 1 2.0745 8.3233 -3.4353 36 1 1.5553 8.5375 -5.9927 37 1 1.8379 4.3813 -5.2129 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049426423.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:09:48 Heat of formation + Delta-G solvation = -41.848803 kcal Electronic energy + Delta-G solvation = -22093.619559 eV Core-core repulsion = 18645.616033 eV Total energy + Delta-G solvation = -3448.003526 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.55239 -39.57090 -38.31003 -35.33114 -34.24868 -32.91900 -31.64385 -31.02649 -29.74936 -28.73592 -25.07322 -24.33849 -23.15010 -21.53191 -21.31560 -19.75580 -19.27053 -18.59430 -17.14328 -16.39962 -16.16877 -15.50973 -15.25483 -14.78237 -14.60362 -14.26671 -14.09449 -13.69845 -13.22276 -12.97294 -12.88228 -12.54621 -12.38839 -12.08527 -11.93873 -11.41834 -11.37402 -11.15369 -10.85698 -10.71056 -10.44319 -10.22644 -9.82723 -9.82217 -9.73051 -8.99168 -8.91025 -8.75657 -8.38617 -7.82841 -6.38217 -4.02470 1.38328 2.05547 2.86917 3.05768 3.18474 3.21999 3.41871 3.59757 3.77659 4.02750 4.57888 4.70424 4.74075 4.99490 5.11417 5.49413 5.61916 5.77124 5.84033 5.88592 5.91858 6.22792 6.29979 6.42349 6.54435 6.66562 6.73279 6.83663 6.85317 6.89011 7.01528 7.28662 7.43553 7.70810 7.75835 7.91432 8.35518 8.55130 8.96429 9.40296 9.78475 10.55158 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.024677 B = 0.004551 C = 0.004076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1134.392593 B = 6150.858981 C = 6867.186710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.134 3.866 3 N -0.428 5.428 4 C -0.337 4.337 5 H 0.105 0.895 6 C 0.035 3.965 7 N -0.863 5.863 8 Si 0.924 3.076 9 H -0.267 1.267 10 H -0.280 1.280 11 H -0.279 1.279 12 C 0.447 3.553 13 O -0.612 6.612 14 C 0.140 3.860 15 H 0.108 0.892 16 C -0.156 4.156 17 N -0.702 5.702 18 C 0.583 3.417 19 O -0.542 6.542 20 C -0.228 4.228 21 C -0.164 4.164 22 C -0.048 4.048 23 O -0.177 6.177 24 C 0.020 3.980 25 H 0.081 0.919 26 H 0.026 0.974 27 H 0.033 0.967 28 H 0.031 0.969 29 H 0.108 0.892 30 H 0.268 0.732 31 H 0.086 0.914 32 H 0.052 0.948 33 H 0.058 0.942 34 H 0.403 0.597 35 H 0.159 0.841 36 H 0.207 0.793 37 H 0.213 0.787 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.256 7.541 -9.762 12.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.011 3.989 3 N -0.145 5.145 4 C -0.464 4.464 5 H 0.123 0.877 6 C -0.169 4.169 7 N -0.501 5.501 8 Si 0.751 3.249 9 H -0.191 1.191 10 H -0.206 1.206 11 H -0.205 1.205 12 C 0.234 3.766 13 O -0.500 6.500 14 C 0.033 3.967 15 H 0.125 0.875 16 C -0.215 4.215 17 N -0.354 5.354 18 C 0.370 3.630 19 O -0.421 6.421 20 C -0.233 4.233 21 C -0.184 4.184 22 C -0.113 4.113 23 O -0.072 6.072 24 C -0.050 4.050 25 H 0.100 0.900 26 H 0.046 0.954 27 H 0.052 0.948 28 H 0.049 0.951 29 H 0.126 0.874 30 H 0.079 0.921 31 H 0.104 0.896 32 H 0.071 0.929 33 H 0.077 0.923 34 H 0.239 0.761 35 H 0.176 0.824 36 H 0.224 0.776 37 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges 2.036 7.554 -9.637 12.413 hybrid contribution 0.177 0.048 0.781 0.803 sum 2.214 7.602 -8.856 11.879 Atomic orbital electron populations 1.21940 0.96907 0.99400 1.01376 1.21364 0.94457 0.82595 1.00484 1.43746 1.53886 1.11409 1.05417 1.19946 1.32530 1.11117 0.82855 0.87697 1.25314 0.95429 0.96499 0.99667 1.70090 1.29173 1.24307 1.26562 0.85890 0.78969 0.78869 0.81208 1.19079 1.20585 1.20513 1.19895 0.84798 0.87201 0.84658 1.90490 1.55506 1.70888 1.33109 1.20591 0.96614 0.93765 0.85741 0.87472 1.22105 0.94010 1.02098 1.03289 1.45687 1.71500 1.05700 1.12504 1.17233 0.76891 0.81905 0.86995 1.90770 1.50517 1.63067 1.37726 1.21623 1.12744 0.94505 0.94397 1.22789 1.04532 0.95216 0.95854 1.23900 1.06927 0.86516 0.94001 1.83784 1.69554 1.15262 1.38614 1.24565 0.99675 0.94580 0.86210 0.90014 0.95448 0.94805 0.95109 0.87438 0.92107 0.89566 0.92867 0.92302 0.76057 0.82375 0.77643 0.77015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.20 9.62 37.16 0.36 -2.84 16 2 C 0.13 3.21 5.19 -4.04 -0.02 3.18 16 3 N -0.43 -10.48 2.65 -114.81 -0.30 -10.78 16 4 C -0.34 -8.20 8.45 -14.93 -0.13 -8.33 16 5 H 0.11 2.44 4.97 -52.49 -0.26 2.18 16 6 C 0.04 0.85 5.20 -17.47 -0.09 0.75 16 7 N -0.86 -21.20 8.09 55.50 0.45 -20.75 16 8 Si 0.92 18.98 29.56 -169.99 -5.03 13.95 16 9 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 10 H -0.28 -5.85 7.11 56.52 0.40 -5.44 16 11 H -0.28 -5.71 7.11 56.52 0.40 -5.31 16 12 C 0.45 10.48 6.90 -10.99 -0.08 10.41 16 13 O -0.61 -15.15 15.30 5.54 0.08 -15.06 16 14 C 0.14 2.88 2.13 -69.08 -0.15 2.73 16 15 H 0.11 2.40 6.80 -51.93 -0.35 2.05 16 16 C -0.16 -2.86 9.14 37.16 0.34 -2.52 16 17 N -0.70 -12.66 5.00 -56.03 -0.28 -12.94 16 18 C 0.58 10.51 7.78 -12.54 -0.10 10.42 16 19 O -0.54 -11.53 16.65 5.26 0.09 -11.44 16 20 C -0.23 -3.32 6.31 -103.28 -0.65 -3.97 16 21 C -0.16 -2.04 11.01 -37.46 -0.41 -2.45 16 22 C -0.05 -0.46 12.03 29.30 0.35 -0.11 16 23 O -0.18 -1.95 10.52 7.64 0.08 -1.87 16 24 C 0.02 0.23 11.61 30.07 0.35 0.58 16 25 H 0.08 2.04 6.39 -51.93 -0.33 1.70 16 26 H 0.03 0.64 7.87 -51.93 -0.41 0.23 16 27 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.03 0.73 7.72 -51.92 -0.40 0.33 16 29 H 0.11 2.67 5.75 -51.93 -0.30 2.37 16 30 H 0.27 6.26 8.31 -40.82 -0.34 5.92 16 31 H 0.09 1.62 6.04 -51.93 -0.31 1.31 16 32 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 34 H 0.40 6.65 6.69 -40.82 -0.27 6.38 16 35 H 0.16 1.84 8.06 -52.48 -0.42 1.42 16 36 H 0.21 1.09 8.06 -52.48 -0.42 0.67 16 37 H 0.21 1.88 7.47 -52.49 -0.39 1.49 16 LS Contribution 313.00 15.07 4.72 4.72 Total: -1.00 -29.97 313.00 -4.70 -34.67 By element: Atomic # 1 Polarization: 15.94 SS G_CDS: -4.28 Total: 11.66 kcal Atomic # 6 Polarization: 8.08 SS G_CDS: -0.22 Total: 7.85 kcal Atomic # 7 Polarization: -44.34 SS G_CDS: -0.14 Total: -44.48 kcal Atomic # 8 Polarization: -28.62 SS G_CDS: 0.25 Total: -28.37 kcal Atomic # 14 Polarization: 18.98 SS G_CDS: -5.03 Total: 13.95 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -29.97 -4.70 -34.67 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049426423.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.181 kcal (2) G-P(sol) polarization free energy of solvation -29.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.668 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds