Wall clock time and date at job start Tue Mar 31 2020 02:09:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46500 * 109.47151 * 2 1 4 4 C 1.37096 * 119.99916 * 97.75147 * 3 2 1 5 5 H 1.07996 * 120.00177 * 163.90370 * 4 3 2 6 6 C 1.38951 * 119.99872 * 343.89832 * 4 3 2 7 7 N 1.31411 * 120.00002 * 350.89542 * 6 4 3 8 8 Si 1.86800 * 119.99652 * 170.88752 * 6 4 3 9 9 H 1.48495 * 109.47408 * 0.02562 * 8 6 4 10 10 H 1.48505 * 109.46832 * 120.00451 * 8 6 4 11 11 H 1.48507 * 109.47115 * 240.00165 * 8 6 4 12 12 C 1.34778 * 120.00155 * 277.75192 * 3 2 1 13 13 O 1.21298 * 119.99893 * 3.59331 * 12 3 2 14 14 C 1.50693 * 120.00140 * 183.31605 * 12 3 2 15 15 H 1.08996 * 109.47075 * 311.68589 * 14 12 3 16 16 C 1.53001 * 109.47131 * 71.68518 * 14 12 3 17 17 N 1.46501 * 109.47139 * 191.68569 * 14 12 3 18 18 C 1.34776 * 120.00132 * 155.00157 * 17 14 12 19 19 O 1.21620 * 119.99882 * 359.97438 * 18 17 14 20 20 C 1.47380 * 120.00462 * 179.97438 * 18 17 14 21 21 C 1.47015 * 127.19637 * 179.97438 * 20 18 17 22 22 C 1.34168 * 105.95652 * 179.97438 * 21 20 18 23 23 O 1.34214 * 109.12627 * 0.02562 * 22 21 20 24 24 C 1.33658 * 110.90375 * 359.75923 * 23 22 21 25 25 H 1.09003 * 109.46998 * 299.99759 * 1 2 3 26 26 H 1.09001 * 109.47611 * 59.99460 * 1 2 3 27 27 H 1.09001 * 109.47203 * 180.02562 * 1 2 3 28 28 H 1.09007 * 109.46745 * 240.00664 * 2 1 3 29 29 H 1.09001 * 109.47611 * 120.00540 * 2 1 3 30 30 H 0.97000 * 119.99480 * 179.97438 * 7 6 4 31 31 H 1.09001 * 109.47182 * 301.85408 * 16 14 12 32 32 H 1.09006 * 109.47109 * 61.85501 * 16 14 12 33 33 H 1.09000 * 109.47524 * 181.85477 * 16 14 12 34 34 H 0.96998 * 120.00486 * 335.00145 * 17 14 12 35 35 H 1.08007 * 127.02261 * 359.97438 * 21 20 18 36 36 H 1.08008 * 125.43970 * 179.97438 * 22 21 20 37 37 H 1.07998 * 125.79804 * 180.26831 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3978 1.9741 1.1765 5 1 2.9918 2.8759 1.1597 6 6 2.0181 1.4148 2.3904 7 7 1.1517 0.4271 2.4164 8 14 2.7394 2.0668 3.9854 9 1 3.6839 3.1728 3.6859 10 1 1.6453 2.5720 4.8533 11 1 3.4618 0.9741 4.6851 12 6 2.0945 2.0691 -1.1565 13 8 1.6980 1.5679 -2.1875 14 6 2.6666 3.4631 -1.1678 15 1 2.2096 4.0498 -0.3709 16 6 4.1792 3.3955 -0.9481 17 7 2.3886 4.0947 -2.4601 18 6 2.3324 5.4379 -2.5556 19 8 2.5120 6.1257 -1.5688 20 6 2.0533 6.0732 -3.8558 21 6 1.9562 7.5126 -4.1390 22 6 1.6904 7.6134 -5.4503 23 8 1.6181 6.3824 -5.9802 24 6 1.8360 5.4487 -5.0489 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 1.8933 -0.5138 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 0.8869 0.0364 3.2638 31 1 4.3870 2.8961 -0.0017 32 1 4.6401 2.8367 -1.7626 33 1 4.5884 4.4055 -0.9233 34 1 2.2450 3.5461 -3.2472 35 1 2.0745 8.3233 -3.4353 36 1 1.5553 8.5375 -5.9927 37 1 1.8379 4.3813 -5.2129 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049426423.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:09:47 Heat of formation + Delta-G solvation = -61.505588 kcal Electronic energy + Delta-G solvation = -22094.471941 eV Core-core repulsion = 18645.616033 eV Total energy + Delta-G solvation = -3448.855908 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -43.46416 -41.21484 -39.96673 -37.15801 -35.89590 -33.98944 -33.48688 -32.53356 -31.13153 -30.12221 -26.91494 -25.84687 -24.67325 -23.00999 -22.35927 -21.09596 -21.04435 -19.86512 -18.74699 -17.91384 -17.11513 -17.02259 -16.83354 -16.27505 -15.99179 -15.96900 -15.52675 -15.40633 -14.68365 -14.51080 -14.38417 -13.84120 -13.82117 -13.60375 -13.31664 -13.15499 -13.10561 -12.85183 -12.55584 -12.50056 -12.17638 -11.98104 -11.70121 -11.20835 -10.87331 -10.85251 -10.47713 -10.11649 -9.73786 -9.72092 -8.22990 -5.92964 0.34655 1.15043 1.40035 1.50271 1.61303 1.86252 1.97480 2.12924 2.31445 2.32059 2.97378 3.13290 3.63630 3.78902 3.99250 4.15781 4.25662 4.28216 4.55225 4.58258 4.76077 4.77967 4.85942 4.86457 4.95596 5.01324 5.09163 5.14691 5.29714 5.35724 5.44429 5.53859 5.80112 5.85812 5.99269 6.45618 6.53390 7.08483 7.14586 7.53186 7.90567 8.70947 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.024677 B = 0.004551 C = 0.004076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1134.392593 B = 6150.858981 C = 6867.186710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.134 3.866 3 N -0.439 5.439 4 C -0.356 4.356 5 H 0.111 0.889 6 C -0.002 4.002 7 N -0.881 5.881 8 Si 0.987 3.013 9 H -0.262 1.262 10 H -0.283 1.283 11 H -0.274 1.274 12 C 0.440 3.560 13 O -0.628 6.628 14 C 0.148 3.852 15 H 0.085 0.915 16 C -0.145 4.145 17 N -0.698 5.698 18 C 0.583 3.417 19 O -0.583 6.583 20 C -0.267 4.267 21 C -0.195 4.195 22 C -0.019 4.019 23 O -0.174 6.174 24 C 0.042 3.958 25 H 0.063 0.937 26 H 0.014 0.986 27 H 0.056 0.944 28 H 0.030 0.970 29 H 0.100 0.900 30 H 0.271 0.729 31 H 0.080 0.920 32 H 0.064 0.936 33 H 0.065 0.935 34 H 0.411 0.589 35 H 0.157 0.843 36 H 0.254 0.746 37 H 0.238 0.762 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.594 8.286 -10.942 13.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.011 3.989 3 N -0.155 5.155 4 C -0.483 4.483 5 H 0.129 0.871 6 C -0.204 4.204 7 N -0.520 5.520 8 Si 0.811 3.189 9 H -0.186 1.186 10 H -0.209 1.209 11 H -0.200 1.200 12 C 0.229 3.771 13 O -0.518 6.518 14 C 0.040 3.960 15 H 0.103 0.897 16 C -0.204 4.204 17 N -0.350 5.350 18 C 0.373 3.627 19 O -0.465 6.465 20 C -0.272 4.272 21 C -0.215 4.215 22 C -0.085 4.085 23 O -0.068 6.068 24 C -0.029 4.029 25 H 0.081 0.919 26 H 0.033 0.967 27 H 0.075 0.925 28 H 0.048 0.952 29 H 0.118 0.882 30 H 0.081 0.919 31 H 0.099 0.901 32 H 0.083 0.917 33 H 0.084 0.916 34 H 0.249 0.751 35 H 0.175 0.825 36 H 0.269 0.731 37 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges 2.372 8.290 -10.849 13.859 hybrid contribution 0.017 -0.187 1.071 1.087 sum 2.389 8.104 -9.779 12.923 Atomic orbital electron populations 1.21779 0.96345 1.00382 0.99678 1.21329 0.94858 0.82738 0.99940 1.43932 1.54027 1.11641 1.05906 1.20222 1.33246 1.11686 0.83139 0.87146 1.26060 0.95512 0.96671 1.02141 1.70170 1.29561 1.24882 1.27366 0.84946 0.78098 0.78423 0.77429 1.18596 1.20938 1.19954 1.20352 0.84479 0.88114 0.84179 1.90460 1.56175 1.71622 1.33512 1.20366 0.97609 0.91609 0.86443 0.89740 1.22002 0.92388 1.02590 1.03396 1.45613 1.71626 1.06002 1.11786 1.17725 0.75658 0.81414 0.87952 1.90735 1.52522 1.63749 1.39493 1.21502 1.16095 0.95970 0.93619 1.22947 1.06817 0.94332 0.97407 1.24681 1.03537 0.87168 0.93084 1.83842 1.68965 1.15749 1.38277 1.24933 0.97116 0.95636 0.85168 0.91864 0.96657 0.92545 0.95177 0.88226 0.91856 0.90149 0.91683 0.91637 0.75105 0.82513 0.73066 0.74628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.74 9.62 71.98 0.69 -5.05 16 2 C 0.13 6.47 5.19 86.38 0.45 6.92 16 3 N -0.44 -21.68 2.65 -635.53 -1.68 -23.37 16 4 C -0.36 -17.43 8.45 84.04 0.71 -16.72 16 5 H 0.11 5.18 4.97 -2.91 -0.01 5.16 16 6 C 0.00 -0.07 5.20 84.93 0.44 0.37 16 7 N -0.88 -43.30 8.09 21.66 0.18 -43.12 16 8 Si 0.99 38.64 29.56 68.60 2.03 40.67 16 9 H -0.26 -9.99 7.11 99.48 0.71 -9.28 16 10 H -0.28 -11.21 7.11 99.48 0.71 -10.50 16 11 H -0.27 -10.46 7.11 99.48 0.71 -9.75 16 12 C 0.44 20.82 6.90 87.65 0.60 21.43 16 13 O -0.63 -31.12 15.30 -3.08 -0.05 -31.17 16 14 C 0.15 6.13 2.13 44.24 0.09 6.23 16 15 H 0.08 3.91 6.80 -2.39 -0.02 3.89 16 16 C -0.15 -5.28 9.14 71.98 0.66 -4.62 16 17 N -0.70 -25.20 5.00 -449.42 -2.25 -27.44 16 18 C 0.58 21.21 7.78 86.65 0.67 21.89 16 19 O -0.58 -25.46 16.65 -4.10 -0.07 -25.53 16 20 C -0.27 -7.56 6.31 -19.00 -0.12 -7.68 16 21 C -0.20 -4.60 11.01 23.64 0.26 -4.34 16 22 C -0.02 -0.31 12.03 66.89 0.80 0.49 16 23 O -0.17 -3.27 10.52 4.42 0.05 -3.22 16 24 C 0.04 0.89 11.61 67.39 0.78 1.67 16 25 H 0.06 3.17 6.39 -2.39 -0.02 3.16 16 26 H 0.01 0.70 7.87 -2.39 -0.02 0.68 16 27 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 28 H 0.03 1.43 7.72 -2.38 -0.02 1.41 16 29 H 0.10 4.98 5.75 -2.39 -0.01 4.96 16 30 H 0.27 12.59 8.31 -92.71 -0.77 11.82 16 31 H 0.08 3.01 6.04 -2.39 -0.01 2.99 16 32 H 0.06 2.18 8.14 -2.38 -0.02 2.16 16 33 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 34 H 0.41 13.34 6.69 -92.71 -0.62 12.72 16 35 H 0.16 3.61 8.06 -2.91 -0.02 3.59 16 36 H 0.25 1.45 8.06 -2.91 -0.02 1.43 16 37 H 0.24 3.58 7.47 -2.91 -0.02 3.56 16 Total: -1.00 -64.83 313.00 4.75 -60.08 By element: Atomic # 1 Polarization: 32.03 SS G_CDS: 0.49 Total: 32.53 kcal Atomic # 6 Polarization: 14.53 SS G_CDS: 6.05 Total: 20.58 kcal Atomic # 7 Polarization: -90.18 SS G_CDS: -3.75 Total: -93.93 kcal Atomic # 8 Polarization: -59.86 SS G_CDS: -0.07 Total: -59.92 kcal Atomic # 14 Polarization: 38.64 SS G_CDS: 2.03 Total: 40.67 kcal Total: -64.83 4.75 -60.08 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049426423.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.427 kcal (2) G-P(sol) polarization free energy of solvation -64.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.079 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds