Wall clock time and date at job start Tue Mar 31 2020 01:59:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.46965 * 2 1 4 4 C 1.50696 * 109.46890 * 240.00408 * 2 1 3 5 5 H 1.08002 * 120.00157 * 239.99837 * 4 2 1 6 6 C 1.37881 * 120.00447 * 59.99907 * 4 2 1 7 7 N 1.31510 * 119.99635 * 359.97438 * 6 4 2 8 8 Si 1.86792 * 120.00210 * 179.97438 * 6 4 2 9 9 H 1.48508 * 109.47150 * 60.00100 * 8 6 4 10 10 H 1.48498 * 109.47193 * 180.02562 * 8 6 4 11 11 H 1.48501 * 109.47405 * 300.00440 * 8 6 4 12 12 N 1.46499 * 109.47136 * 120.00350 * 2 1 3 13 13 C 1.34777 * 119.99665 * 275.27771 * 12 2 1 14 14 O 1.21283 * 119.99990 * 359.71991 * 13 12 2 15 15 C 1.50698 * 119.99538 * 179.72653 * 13 12 2 16 16 H 1.09003 * 109.47112 * 299.99065 * 15 13 12 17 17 C 1.52995 * 109.47490 * 59.99635 * 15 13 12 18 18 N 1.46509 * 109.47002 * 179.97438 * 15 13 12 19 19 C 1.34770 * 120.00092 * 154.99579 * 18 15 13 20 20 O 1.21616 * 120.00043 * 0.02562 * 19 18 15 21 21 C 1.47375 * 120.00224 * 179.97438 * 19 18 15 22 22 C 1.47023 * 127.19613 * 180.02562 * 21 19 18 23 23 C 1.34173 * 105.95348 * 179.97438 * 22 21 19 24 24 O 1.34216 * 109.12740 * 359.97438 * 23 22 21 25 25 C 1.33651 * 110.90907 * 359.76509 * 24 23 22 26 26 H 1.08999 * 109.47488 * 299.99925 * 1 2 3 27 27 H 1.09005 * 109.47368 * 59.99853 * 1 2 3 28 28 H 1.09006 * 109.47500 * 179.97438 * 1 2 3 29 29 H 0.97000 * 120.00295 * 179.97438 * 7 6 4 30 30 H 0.97001 * 119.99790 * 94.99484 * 12 2 1 31 31 H 1.09001 * 109.46983 * 299.99719 * 17 15 13 32 32 H 1.08995 * 109.47139 * 60.00165 * 17 15 13 33 33 H 1.09003 * 109.47199 * 179.97438 * 17 15 13 34 34 H 0.96996 * 119.99554 * 334.99940 * 18 15 13 35 35 H 1.07995 * 127.01908 * 359.93703 * 22 21 19 36 36 H 1.07999 * 125.43673 * 180.02562 * 23 22 21 37 37 H 1.07996 * 125.80708 * 180.26656 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0322 -0.7103 -1.2305 5 1 2.6532 -1.5884 -1.1315 6 6 1.6992 -0.2392 -2.4828 7 7 0.9427 0.8297 -2.6034 8 14 2.3224 -1.1193 -4.0080 9 1 1.8279 -2.5197 -4.0083 10 1 1.8278 -0.4190 -5.2204 11 1 3.8074 -1.1189 -4.0078 12 7 2.0183 -0.6907 1.1961 13 6 2.1417 -0.0197 2.3585 14 8 1.8533 1.1571 2.4129 15 6 2.6382 -0.7317 3.5903 16 1 1.9642 -1.5539 3.8312 17 6 4.0418 -1.2822 3.3305 18 7 2.6830 0.2084 4.7131 19 6 2.5978 -0.2482 5.9782 20 8 2.4843 -1.4408 6.1879 21 6 2.6434 0.6975 7.1077 22 6 2.5651 0.3756 8.5401 23 6 2.6483 1.5483 9.1866 24 8 2.7689 2.5382 8.2883 25 6 2.7738 2.0539 7.0427 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 0.7086 1.1614 -3.4843 30 1 2.2489 -1.6319 1.1525 31 1 4.0089 -1.9816 2.4951 32 1 4.7157 -0.4600 3.0897 33 1 4.4011 -1.7968 4.2217 34 1 2.7738 1.1595 4.5458 35 1 2.4611 -0.6045 8.9816 36 1 2.6231 1.6754 10.2588 37 1 2.8632 2.6373 6.1383 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000064318127.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:59:34 Heat of formation + Delta-G solvation = -63.969826 kcal Electronic energy + Delta-G solvation = -21332.728212 eV Core-core repulsion = 17883.765446 eV Total energy + Delta-G solvation = -3448.962765 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.73611 -39.96832 -38.61006 -35.21633 -34.56193 -33.16116 -32.54172 -31.10501 -29.64964 -28.51556 -25.32575 -24.87430 -23.30760 -21.68589 -21.02833 -20.10378 -19.56658 -18.80699 -17.23587 -16.46921 -16.34264 -15.98281 -15.46347 -15.24643 -14.91864 -14.79537 -14.34221 -13.89403 -13.42946 -13.27306 -13.12004 -12.63370 -12.58675 -12.30135 -12.19104 -11.81214 -11.45348 -11.15305 -10.98994 -10.79967 -10.38235 -10.27900 -10.09690 -10.02421 -9.37422 -9.12006 -9.07129 -8.94199 -8.60597 -8.03385 -6.16992 -4.26741 1.16873 1.86736 2.69345 3.00881 3.16678 3.23182 3.28624 3.29658 3.31918 3.99466 4.32762 4.39495 4.48569 4.87134 5.13804 5.15689 5.19598 5.31472 5.33813 5.44145 5.68942 5.69838 5.87027 6.05245 6.19467 6.37059 6.71378 6.76532 6.89961 7.08226 7.33447 7.46228 7.51136 7.62909 7.83936 8.08709 8.17309 8.53770 8.69132 8.96105 9.40641 10.88934 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.039475 B = 0.003215 C = 0.003094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 709.147530 B = 8707.190611 C = 9046.895074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.265 3.735 3 H 0.050 0.950 4 C -0.536 4.536 5 H 0.062 0.938 6 C 0.067 3.933 7 N -0.883 5.883 8 Si 0.903 3.097 9 H -0.276 1.276 10 H -0.286 1.286 11 H -0.276 1.276 12 N -0.699 5.699 13 C 0.500 3.500 14 O -0.554 6.554 15 C 0.123 3.877 16 H 0.111 0.889 17 C -0.157 4.157 18 N -0.705 5.705 19 C 0.589 3.411 20 O -0.541 6.541 21 C -0.234 4.234 22 C -0.164 4.164 23 C -0.044 4.044 24 O -0.175 6.175 25 C 0.026 3.974 26 H 0.014 0.986 27 H 0.091 0.909 28 H 0.027 0.973 29 H 0.265 0.735 30 H 0.391 0.609 31 H 0.075 0.925 32 H 0.063 0.937 33 H 0.068 0.932 34 H 0.407 0.593 35 H 0.159 0.841 36 H 0.208 0.792 37 H 0.214 0.786 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.659 0.144 18.305 18.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.164 3.836 3 H 0.068 0.932 4 C -0.574 4.574 5 H 0.080 0.920 6 C -0.137 4.137 7 N -0.521 5.521 8 Si 0.730 3.270 9 H -0.201 1.201 10 H -0.211 1.211 11 H -0.201 1.201 12 N -0.347 5.347 13 C 0.283 3.717 14 O -0.434 6.434 15 C 0.014 3.986 16 H 0.128 0.872 17 C -0.216 4.216 18 N -0.358 5.358 19 C 0.377 3.623 20 O -0.419 6.419 21 C -0.239 4.239 22 C -0.184 4.184 23 C -0.110 4.110 24 O -0.070 6.070 25 C -0.045 4.045 26 H 0.033 0.967 27 H 0.110 0.890 28 H 0.047 0.953 29 H 0.075 0.925 30 H 0.224 0.776 31 H 0.094 0.906 32 H 0.082 0.918 33 H 0.087 0.913 34 H 0.244 0.756 35 H 0.177 0.823 36 H 0.225 0.775 37 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges 4.290 0.558 18.360 18.863 hybrid contribution 0.354 -0.683 -1.038 1.292 sum 4.644 -0.125 17.322 17.934 Atomic orbital electron populations 1.22094 0.98356 0.99271 1.00973 1.18785 0.91086 0.93983 0.79780 0.93244 1.21168 1.32678 1.13340 0.90252 0.92013 1.24885 0.94744 0.94938 0.99087 1.69885 1.35687 1.22406 1.24089 0.86490 0.79171 0.79614 0.81720 1.20108 1.21116 1.20146 1.46498 1.64299 1.13779 1.10116 1.20325 0.78878 0.87620 0.84868 1.90639 1.51769 1.15990 1.84985 1.20873 0.99313 0.92760 0.85634 0.87158 1.22104 0.94913 1.01698 1.02845 1.45587 1.74272 1.11440 1.04453 1.17223 0.76023 0.87412 0.81668 1.90774 1.50123 1.16053 1.84978 1.21517 1.14135 0.93468 0.94735 1.22780 1.05007 0.99694 0.90924 1.23942 1.06786 0.85199 0.95080 1.83802 1.70444 1.37518 1.15197 1.24593 0.99751 0.93525 0.86620 0.96651 0.89034 0.95348 0.92456 0.77572 0.90581 0.91775 0.91313 0.75606 0.82303 0.77515 0.76950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.63 9.26 37.16 0.34 -3.28 16 2 C 0.27 6.53 2.56 -69.09 -0.18 6.36 16 3 H 0.05 1.40 7.58 -51.93 -0.39 1.01 16 4 C -0.54 -13.83 8.73 -34.44 -0.30 -14.13 16 5 H 0.06 1.51 7.74 -52.49 -0.41 1.11 16 6 C 0.07 1.76 5.30 -17.82 -0.09 1.67 16 7 N -0.88 -24.43 11.32 55.43 0.63 -23.80 16 8 Si 0.90 20.27 29.54 -169.99 -5.02 15.25 16 9 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 10 H -0.29 -6.41 7.11 56.52 0.40 -6.01 16 11 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 12 N -0.70 -13.90 4.96 -54.94 -0.27 -14.17 16 13 C 0.50 9.40 7.18 -10.99 -0.08 9.32 16 14 O -0.55 -12.15 15.50 5.55 0.09 -12.06 16 15 C 0.12 1.84 2.98 -69.08 -0.21 1.63 16 16 H 0.11 1.66 7.58 -51.93 -0.39 1.27 16 17 C -0.16 -2.02 9.38 37.16 0.35 -1.67 16 18 N -0.70 -9.87 4.94 -56.02 -0.28 -10.14 16 19 C 0.59 8.58 7.78 -12.54 -0.10 8.48 16 20 O -0.54 -9.44 16.65 5.26 0.09 -9.36 16 21 C -0.23 -2.81 6.31 -103.27 -0.65 -3.47 16 22 C -0.16 -1.70 11.01 -37.45 -0.41 -2.11 16 23 C -0.04 -0.35 12.03 29.30 0.35 0.00 16 24 O -0.17 -1.63 10.52 7.66 0.08 -1.55 16 25 C 0.03 0.24 11.61 30.08 0.35 0.59 16 26 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 27 H 0.09 2.43 6.07 -51.93 -0.32 2.12 16 28 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 29 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 30 H 0.39 6.73 7.96 -40.82 -0.32 6.40 16 31 H 0.08 0.90 7.56 -51.93 -0.39 0.51 16 32 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.41 5.26 6.76 -40.82 -0.28 4.98 16 35 H 0.16 1.51 8.06 -52.49 -0.42 1.08 16 36 H 0.21 0.79 8.06 -52.49 -0.42 0.36 16 37 H 0.21 1.43 7.47 -52.49 -0.39 1.04 16 LS Contribution 324.61 15.07 4.89 4.89 Total: -1.00 -32.49 324.61 -4.99 -37.48 By element: Atomic # 1 Polarization: 14.64 SS G_CDS: -4.57 Total: 10.08 kcal Atomic # 6 Polarization: 4.01 SS G_CDS: -0.62 Total: 3.39 kcal Atomic # 7 Polarization: -48.19 SS G_CDS: 0.08 Total: -48.11 kcal Atomic # 8 Polarization: -23.23 SS G_CDS: 0.25 Total: -22.97 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -5.02 Total: 15.25 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -32.49 -4.99 -37.48 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000064318127.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.493 kcal (2) G-P(sol) polarization free energy of solvation -32.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.477 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds