Wall clock time and date at job start Tue Mar 31 2020 01:59:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.46965 * 2 1 4 4 C 1.50696 * 109.46890 * 240.00408 * 2 1 3 5 5 H 1.08002 * 120.00157 * 239.99837 * 4 2 1 6 6 C 1.37881 * 120.00447 * 59.99907 * 4 2 1 7 7 N 1.31510 * 119.99635 * 359.97438 * 6 4 2 8 8 Si 1.86792 * 120.00210 * 179.97438 * 6 4 2 9 9 H 1.48508 * 109.47150 * 60.00100 * 8 6 4 10 10 H 1.48498 * 109.47193 * 180.02562 * 8 6 4 11 11 H 1.48501 * 109.47405 * 300.00440 * 8 6 4 12 12 N 1.46499 * 109.47136 * 120.00350 * 2 1 3 13 13 C 1.34777 * 119.99665 * 275.27771 * 12 2 1 14 14 O 1.21283 * 119.99990 * 359.71991 * 13 12 2 15 15 C 1.50698 * 119.99538 * 179.72653 * 13 12 2 16 16 H 1.09003 * 109.47112 * 299.99065 * 15 13 12 17 17 C 1.52995 * 109.47490 * 59.99635 * 15 13 12 18 18 N 1.46509 * 109.47002 * 179.97438 * 15 13 12 19 19 C 1.34770 * 120.00092 * 154.99579 * 18 15 13 20 20 O 1.21616 * 120.00043 * 0.02562 * 19 18 15 21 21 C 1.47375 * 120.00224 * 179.97438 * 19 18 15 22 22 C 1.47023 * 127.19613 * 180.02562 * 21 19 18 23 23 C 1.34173 * 105.95348 * 179.97438 * 22 21 19 24 24 O 1.34216 * 109.12740 * 359.97438 * 23 22 21 25 25 C 1.33651 * 110.90907 * 359.76509 * 24 23 22 26 26 H 1.08999 * 109.47488 * 299.99925 * 1 2 3 27 27 H 1.09005 * 109.47368 * 59.99853 * 1 2 3 28 28 H 1.09006 * 109.47500 * 179.97438 * 1 2 3 29 29 H 0.97000 * 120.00295 * 179.97438 * 7 6 4 30 30 H 0.97001 * 119.99790 * 94.99484 * 12 2 1 31 31 H 1.09001 * 109.46983 * 299.99719 * 17 15 13 32 32 H 1.08995 * 109.47139 * 60.00165 * 17 15 13 33 33 H 1.09003 * 109.47199 * 179.97438 * 17 15 13 34 34 H 0.96996 * 119.99554 * 334.99940 * 18 15 13 35 35 H 1.07995 * 127.01908 * 359.93703 * 22 21 19 36 36 H 1.07999 * 125.43673 * 180.02562 * 23 22 21 37 37 H 1.07996 * 125.80708 * 180.26656 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0322 -0.7103 -1.2305 5 1 2.6532 -1.5884 -1.1315 6 6 1.6992 -0.2392 -2.4828 7 7 0.9427 0.8297 -2.6034 8 14 2.3224 -1.1193 -4.0080 9 1 1.8279 -2.5197 -4.0083 10 1 1.8278 -0.4190 -5.2204 11 1 3.8074 -1.1189 -4.0078 12 7 2.0183 -0.6907 1.1961 13 6 2.1417 -0.0197 2.3585 14 8 1.8533 1.1571 2.4129 15 6 2.6382 -0.7317 3.5903 16 1 1.9642 -1.5539 3.8312 17 6 4.0418 -1.2822 3.3305 18 7 2.6830 0.2084 4.7131 19 6 2.5978 -0.2482 5.9782 20 8 2.4843 -1.4408 6.1879 21 6 2.6434 0.6975 7.1077 22 6 2.5651 0.3756 8.5401 23 6 2.6483 1.5483 9.1866 24 8 2.7689 2.5382 8.2883 25 6 2.7738 2.0539 7.0427 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 0.7086 1.1614 -3.4843 30 1 2.2489 -1.6319 1.1525 31 1 4.0089 -1.9816 2.4951 32 1 4.7157 -0.4600 3.0897 33 1 4.4011 -1.7968 4.2217 34 1 2.7738 1.1595 4.5458 35 1 2.4611 -0.6045 8.9816 36 1 2.6231 1.6754 10.2588 37 1 2.8632 2.6373 6.1383 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000064318127.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:59:33 Heat of formation + Delta-G solvation = -87.842126 kcal Electronic energy + Delta-G solvation = -21333.763392 eV Core-core repulsion = 17883.765446 eV Total energy + Delta-G solvation = -3449.997946 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -43.48126 -41.31867 -40.01411 -36.90153 -35.98868 -34.45496 -33.93637 -32.29386 -30.77677 -29.99581 -27.34429 -26.04302 -24.51608 -22.70288 -22.37324 -21.17927 -21.15554 -19.86575 -18.70984 -17.67436 -17.52853 -17.13935 -16.96951 -16.70286 -16.24202 -15.97418 -15.60607 -15.33190 -14.80481 -14.51156 -14.45777 -13.84236 -13.79323 -13.60744 -13.41077 -13.25127 -13.00637 -12.88133 -12.73527 -12.63914 -12.26915 -12.15442 -11.28018 -11.11889 -10.89465 -10.82180 -10.58725 -10.28929 -9.81274 -9.74631 -8.17313 -6.34467 0.31822 1.13463 1.46640 1.48001 1.55655 1.64497 1.79295 2.07970 2.26651 2.38315 2.61235 3.13582 3.57818 3.73078 3.79105 3.99953 4.09351 4.14154 4.53440 4.64254 4.73482 4.75975 4.79176 4.91020 4.99651 5.08394 5.14795 5.21847 5.34693 5.41887 5.57847 5.66945 5.87266 5.98331 6.08793 6.40617 6.72121 6.83721 7.07485 7.29111 7.44490 8.88695 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.039475 B = 0.003215 C = 0.003094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 709.147530 B = 8707.190611 C = 9046.895074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.272 3.728 3 H 0.006 0.994 4 C -0.548 4.548 5 H 0.075 0.925 6 C 0.016 3.984 7 N -0.917 5.917 8 Si 0.971 3.029 9 H -0.266 1.266 10 H -0.288 1.288 11 H -0.270 1.270 12 N -0.696 5.696 13 C 0.501 3.499 14 O -0.587 6.587 15 C 0.134 3.866 16 H 0.113 0.887 17 C -0.150 4.150 18 N -0.702 5.702 19 C 0.590 3.410 20 O -0.576 6.576 21 C -0.269 4.269 22 C -0.194 4.194 23 C -0.022 4.022 24 O -0.176 6.176 25 C 0.041 3.959 26 H 0.013 0.987 27 H 0.068 0.932 28 H 0.039 0.961 29 H 0.265 0.735 30 H 0.407 0.593 31 H 0.088 0.912 32 H 0.064 0.936 33 H 0.074 0.926 34 H 0.412 0.588 35 H 0.160 0.840 36 H 0.251 0.749 37 H 0.237 0.763 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.604 -0.403 19.201 20.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.169 3.831 3 H 0.024 0.976 4 C -0.586 4.586 5 H 0.093 0.907 6 C -0.184 4.184 7 N -0.555 5.555 8 Si 0.795 3.205 9 H -0.190 1.190 10 H -0.213 1.213 11 H -0.195 1.195 12 N -0.344 5.344 13 C 0.287 3.713 14 O -0.468 6.468 15 C 0.025 3.975 16 H 0.131 0.869 17 C -0.208 4.208 18 N -0.355 5.355 19 C 0.380 3.620 20 O -0.458 6.458 21 C -0.274 4.274 22 C -0.213 4.213 23 C -0.088 4.088 24 O -0.071 6.071 25 C -0.029 4.029 26 H 0.032 0.968 27 H 0.086 0.914 28 H 0.058 0.942 29 H 0.075 0.925 30 H 0.242 0.758 31 H 0.107 0.893 32 H 0.083 0.917 33 H 0.093 0.907 34 H 0.250 0.750 35 H 0.177 0.823 36 H 0.267 0.733 37 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges 5.253 -0.004 19.282 19.984 hybrid contribution 0.044 -0.439 -1.233 1.309 sum 5.298 -0.443 18.049 18.815 Atomic orbital electron populations 1.21933 0.98426 0.99491 0.99691 1.18375 0.90978 0.92169 0.81567 0.97648 1.21519 1.32686 1.13674 0.90707 0.90679 1.25765 0.94856 0.95558 1.02253 1.70033 1.36886 1.23895 1.24691 0.85419 0.78714 0.78666 0.77674 1.19032 1.21325 1.19477 1.46217 1.64475 1.14427 1.09315 1.20923 0.77746 0.87222 0.85453 1.90622 1.52932 1.17662 1.85597 1.20758 1.00525 0.92319 0.83888 0.86933 1.22076 0.93199 1.01921 1.03641 1.45586 1.74130 1.11578 1.04223 1.17562 0.74976 0.87388 0.82063 1.90743 1.51995 1.17584 1.85435 1.21505 1.16941 0.94178 0.94735 1.22958 1.07008 1.00859 0.90481 1.24685 1.03800 0.83870 0.96403 1.83848 1.70058 1.37905 1.15261 1.24976 0.97656 0.92815 0.87499 0.96838 0.91353 0.94207 0.92539 0.75766 0.89278 0.91666 0.90716 0.74989 0.82277 0.73335 0.74702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.77 9.26 71.98 0.67 -6.11 16 2 C 0.27 13.58 2.56 44.24 0.11 13.70 16 3 H 0.01 0.33 7.58 -2.39 -0.02 0.31 16 4 C -0.55 -28.03 8.73 25.60 0.22 -27.81 16 5 H 0.08 3.56 7.74 -2.91 -0.02 3.54 16 6 C 0.02 0.84 5.30 84.66 0.45 1.28 16 7 N -0.92 -51.44 11.32 21.45 0.24 -51.20 16 8 Si 0.97 41.04 29.54 68.60 2.03 43.07 16 9 H -0.27 -10.74 7.11 99.48 0.71 -10.03 16 10 H -0.29 -12.16 7.11 99.48 0.71 -11.45 16 11 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 12 N -0.70 -27.37 4.96 -446.11 -2.21 -29.58 16 13 C 0.50 18.75 7.18 87.66 0.63 19.38 16 14 O -0.59 -26.02 15.50 -3.04 -0.05 -26.07 16 15 C 0.13 3.90 2.98 44.24 0.13 4.03 16 16 H 0.11 3.31 7.58 -2.39 -0.02 3.29 16 17 C -0.15 -3.64 9.38 71.98 0.68 -2.96 16 18 N -0.70 -19.31 4.94 -449.41 -2.22 -21.53 16 19 C 0.59 17.04 7.78 86.65 0.67 17.71 16 20 O -0.58 -20.18 16.65 -4.08 -0.07 -20.25 16 21 C -0.27 -6.27 6.31 -18.99 -0.12 -6.39 16 22 C -0.19 -3.78 11.01 23.65 0.26 -3.52 16 23 C -0.02 -0.30 12.03 66.89 0.80 0.51 16 24 O -0.18 -2.86 10.52 4.48 0.05 -2.81 16 25 C 0.04 0.72 11.61 67.40 0.78 1.50 16 26 H 0.01 0.62 8.14 -2.39 -0.02 0.60 16 27 H 0.07 3.72 6.07 -2.38 -0.01 3.70 16 28 H 0.04 1.82 8.14 -2.38 -0.02 1.80 16 29 H 0.27 14.17 8.31 -92.71 -0.77 13.40 16 30 H 0.41 13.46 7.96 -92.71 -0.74 12.72 16 31 H 0.09 1.92 7.56 -2.39 -0.02 1.90 16 32 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 33 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 34 H 0.41 10.44 6.76 -92.71 -0.63 9.81 16 35 H 0.16 2.97 8.06 -2.91 -0.02 2.95 16 36 H 0.25 0.89 8.06 -2.91 -0.02 0.86 16 37 H 0.24 2.74 7.47 -2.91 -0.02 2.72 16 Total: -1.00 -70.81 324.61 2.80 -68.01 By element: Atomic # 1 Polarization: 29.30 SS G_CDS: -0.25 Total: 29.05 kcal Atomic # 6 Polarization: 6.04 SS G_CDS: 5.29 Total: 11.33 kcal Atomic # 7 Polarization: -98.12 SS G_CDS: -4.19 Total: -102.32 kcal Atomic # 8 Polarization: -49.07 SS G_CDS: -0.07 Total: -49.13 kcal Atomic # 14 Polarization: 41.04 SS G_CDS: 2.03 Total: 43.07 kcal Total: -70.81 2.80 -68.01 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000064318127.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.836 kcal (2) G-P(sol) polarization free energy of solvation -70.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.007 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds