Wall clock time and date at job start Tue Mar 31 2020 01:58:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.47665 * 2 1 4 4 C 1.50702 * 109.47248 * 120.00732 * 2 1 3 5 5 H 1.07996 * 120.00286 * 116.67243 * 4 2 1 6 6 C 1.37882 * 119.99605 * 296.67683 * 4 2 1 7 7 N 1.31510 * 119.99983 * 352.39286 * 6 4 2 8 8 Si 1.86801 * 119.99794 * 172.67966 * 6 4 2 9 9 H 1.48501 * 109.46865 * 264.79000 * 8 6 4 10 10 H 1.48494 * 109.47181 * 24.78760 * 8 6 4 11 11 H 1.48494 * 109.47146 * 144.79188 * 8 6 4 12 12 N 1.46900 * 109.47007 * 240.00279 * 2 1 3 13 13 C 1.46903 * 111.00093 * 84.99710 * 12 2 1 14 14 C 1.52996 * 109.47201 * 180.02562 * 13 12 2 15 15 O 1.42906 * 109.46930 * 65.00677 * 14 13 12 16 16 C 1.35898 * 116.99807 * 180.02562 * 15 14 13 17 17 C 1.38739 * 120.05621 * 359.71798 * 16 15 14 18 18 C 1.38150 * 119.94058 * 179.76926 * 17 16 15 19 19 C 1.38263 * 120.05708 * 0.51334 * 18 17 16 20 20 N 1.48004 * 119.94225 * 179.72290 * 19 18 17 21 21 O 1.21800 * 119.99544 * 180.02562 * 20 19 18 22 22 O 1.21792 * 120.00318 * 0.02562 * 20 19 18 23 23 C 1.38265 * 120.11067 * 359.74180 * 19 18 17 24 24 C 1.38146 * 120.05840 * 359.97438 * 23 19 18 25 25 H 1.09003 * 109.46886 * 297.65739 * 1 2 3 26 26 H 1.08998 * 109.47467 * 57.65312 * 1 2 3 27 27 H 1.08992 * 109.47550 * 177.66107 * 1 2 3 28 28 H 0.97007 * 119.99993 * 180.27562 * 7 6 4 29 29 H 1.00903 * 110.99877 * 321.04986 * 12 2 1 30 30 H 1.08998 * 109.47502 * 300.00549 * 13 12 2 31 31 H 1.09003 * 109.46498 * 60.00243 * 13 12 2 32 32 H 1.09001 * 109.47315 * 185.00413 * 14 13 12 33 33 H 1.09002 * 109.47256 * 305.00730 * 14 13 12 34 34 H 1.08000 * 120.02607 * 0.02698 * 17 16 15 35 35 H 1.07997 * 119.96946 * 180.23155 * 18 17 16 36 36 H 1.08004 * 119.96924 * 180.02562 * 23 19 18 37 37 H 1.07999 * 120.03052 * 179.97438 * 24 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7106 1.2304 5 1 2.6082 -1.6189 1.1321 6 6 1.7567 -0.2010 2.4816 7 7 1.1874 0.9786 2.6003 8 14 2.1991 -1.1826 4.0081 9 1 1.0157 -1.9589 4.4575 10 1 3.3114 -2.1143 3.6923 11 1 2.6218 -0.2549 5.0878 12 7 2.0196 -0.6924 -1.1995 13 6 2.0823 0.2227 -2.3469 14 6 2.5949 -0.5330 -3.5745 15 8 1.6489 -1.5384 -3.9442 16 6 1.9544 -2.3060 -5.0232 17 6 3.1375 -2.0920 -5.7157 18 6 3.4479 -2.8769 -6.8094 19 6 2.5758 -3.8678 -7.2205 20 7 2.9080 -4.7031 -8.3962 21 8 2.1402 -5.5761 -8.7595 22 8 3.9491 -4.5176 -9.0005 23 6 1.3936 -4.0795 -6.5353 24 6 1.0813 -3.3013 -5.4374 25 1 -0.3633 0.4770 0.9103 26 1 -0.3634 0.5498 -0.8682 27 1 -0.3634 -1.0267 -0.0419 28 1 0.9971 1.3389 3.4807 29 1 1.4494 -1.4978 -1.4101 30 1 1.0870 0.6165 -2.5525 31 1 2.7588 1.0462 -2.1182 32 1 2.7259 0.1643 -4.4020 33 1 3.5504 -1.0020 -3.3398 34 1 3.8171 -1.3153 -5.3974 35 1 4.3704 -2.7132 -7.3464 36 1 0.7142 -4.8546 -6.8582 37 1 0.1576 -3.4668 -4.9028 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069034851.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:58:09 Heat of formation + Delta-G solvation = -19.256892 kcal Electronic energy + Delta-G solvation = -20744.127223 eV Core-core repulsion = 17297.103356 eV Total energy + Delta-G solvation = -3447.023867 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.30653 -40.63117 -38.13094 -36.69359 -36.06798 -32.93294 -31.88701 -31.40699 -30.07225 -27.10310 -26.14894 -25.18901 -23.84200 -22.64169 -21.54549 -20.36750 -19.56868 -18.79262 -18.57617 -17.65948 -16.62770 -16.34357 -16.08863 -15.33668 -14.79742 -14.53005 -14.36875 -14.21931 -13.75950 -13.35449 -13.07487 -12.87175 -12.06424 -11.90285 -11.72437 -11.63286 -11.41672 -11.36262 -11.34347 -11.28925 -10.96315 -10.85836 -10.53782 -10.27772 -9.91203 -9.82968 -9.13954 -9.02686 -8.41888 -7.43959 -6.08187 -4.08983 -0.29655 0.58273 1.18447 1.27567 2.74268 2.96908 3.27402 3.34724 3.38685 4.02543 4.12866 4.33639 4.37044 4.57466 4.76373 4.85411 4.91478 5.16290 5.20879 5.25018 5.29437 5.43322 5.54041 5.62171 5.76559 5.97105 6.03213 6.23657 6.54377 6.68863 6.87796 6.94010 7.19212 7.50551 7.54446 7.78826 8.10727 8.39020 8.48532 8.97518 9.55636 11.00844 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.034913 B = 0.002721 C = 0.002670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 801.804922 B =10287.761845 C =10485.004035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.210 3.790 3 H 0.039 0.961 4 C -0.499 4.499 5 H 0.063 0.937 6 C 0.057 3.943 7 N -0.896 5.896 8 Si 0.895 3.105 9 H -0.282 1.282 10 H -0.273 1.273 11 H -0.287 1.287 12 N -0.683 5.683 13 C 0.060 3.940 14 C 0.054 3.946 15 O -0.294 6.294 16 C 0.198 3.802 17 C -0.213 4.213 18 C -0.010 4.010 19 C -0.096 4.096 20 N 0.039 4.961 21 O -0.171 6.171 22 O -0.173 6.173 23 C -0.014 4.014 24 C -0.155 4.155 25 H 0.076 0.924 26 H 0.009 0.991 27 H 0.030 0.970 28 H 0.260 0.740 29 H 0.331 0.669 30 H 0.032 0.968 31 H 0.090 0.910 32 H 0.067 0.933 33 H 0.079 0.921 34 H 0.153 0.847 35 H 0.154 0.846 36 H 0.158 0.842 37 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.223 -4.606 -17.553 18.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.102 3.898 3 H 0.056 0.944 4 C -0.538 4.538 5 H 0.081 0.919 6 C -0.144 4.144 7 N -0.535 5.535 8 Si 0.723 3.277 9 H -0.208 1.208 10 H -0.198 1.198 11 H -0.213 1.213 12 N -0.314 5.314 13 C -0.070 4.070 14 C -0.020 4.020 15 O -0.205 6.205 16 C 0.149 3.851 17 C -0.232 4.232 18 C -0.029 4.029 19 C -0.180 4.180 20 N 0.555 4.445 21 O -0.385 6.385 22 O -0.386 6.386 23 C -0.033 4.033 24 C -0.174 4.174 25 H 0.095 0.905 26 H 0.028 0.972 27 H 0.049 0.951 28 H 0.070 0.930 29 H 0.148 0.852 30 H 0.050 0.950 31 H 0.109 0.891 32 H 0.085 0.915 33 H 0.097 0.903 34 H 0.171 0.829 35 H 0.172 0.828 36 H 0.175 0.825 37 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 1.518 -3.971 -16.539 17.077 hybrid contribution -0.511 -0.414 0.353 0.746 sum 1.007 -4.385 -16.186 16.800 Atomic orbital electron populations 1.22376 1.00845 0.98849 1.00317 1.19197 0.89395 0.94769 0.86416 0.94357 1.21114 1.33157 1.09923 0.89566 0.91921 1.24950 0.95490 0.94857 0.99068 1.69944 1.43734 1.16243 1.23606 0.86528 0.78638 0.79933 0.82592 1.20818 1.19804 1.21349 1.60911 1.58359 1.09037 1.03091 1.21998 1.00021 0.95649 0.89332 1.23364 0.92330 0.88518 0.97807 1.86205 1.47274 1.45377 1.41643 1.19475 0.91733 0.88690 0.85164 1.21357 0.98894 1.04526 0.98438 1.20804 0.98086 0.89960 0.94077 1.20936 1.01232 1.01561 0.94261 1.43526 0.99773 0.99967 1.01250 1.94526 1.46836 1.26151 1.70993 1.94523 1.13810 1.74843 1.55447 1.20816 0.93490 0.97242 0.91787 1.20501 1.01965 0.96465 0.98514 0.90480 0.97239 0.95110 0.92995 0.85173 0.94969 0.89145 0.91507 0.90263 0.82921 0.82832 0.82456 0.82621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.74 9.01 37.16 0.33 -3.41 16 2 C 0.21 4.98 2.46 -68.86 -0.17 4.81 16 3 H 0.04 1.00 7.79 -51.93 -0.40 0.60 16 4 C -0.50 -13.35 8.79 -34.44 -0.30 -13.65 16 5 H 0.06 1.70 7.82 -52.49 -0.41 1.29 16 6 C 0.06 1.55 5.21 -17.82 -0.09 1.46 16 7 N -0.90 -25.11 11.92 55.43 0.66 -24.45 16 8 Si 0.90 20.98 29.54 -169.99 -5.02 15.96 16 9 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 10 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 11 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 12 N -0.68 -13.28 6.23 -107.95 -0.67 -13.95 16 13 C 0.06 0.91 5.90 -3.82 -0.02 0.88 16 14 C 0.05 0.61 5.08 37.16 0.19 0.80 16 15 O -0.29 -3.51 9.66 -19.42 -0.19 -3.70 16 16 C 0.20 2.01 6.69 -39.21 -0.26 1.75 16 17 C -0.21 -1.85 9.04 -39.43 -0.36 -2.21 16 18 C -0.01 -0.09 9.55 -39.60 -0.38 -0.47 16 19 C -0.10 -1.00 6.85 -79.94 -0.55 -1.55 16 20 N 0.04 0.48 4.45 33.97 0.15 0.64 16 21 O -0.17 -2.25 18.44 -29.46 -0.54 -2.79 16 22 O -0.17 -2.27 18.44 -29.46 -0.54 -2.81 16 23 C -0.01 -0.13 9.55 -39.61 -0.38 -0.51 16 24 C -0.16 -1.41 9.99 -39.43 -0.39 -1.80 16 25 H 0.08 1.96 6.59 -51.93 -0.34 1.61 16 26 H 0.01 0.18 7.51 -51.93 -0.39 -0.21 16 27 H 0.03 0.66 8.09 -51.93 -0.42 0.24 16 28 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 29 H 0.33 6.28 8.01 -39.29 -0.31 5.97 16 30 H 0.03 0.50 7.48 -51.93 -0.39 0.11 16 31 H 0.09 1.34 8.06 -51.93 -0.42 0.92 16 32 H 0.07 0.56 7.65 -51.93 -0.40 0.17 16 33 H 0.08 0.86 7.67 -51.93 -0.40 0.46 16 34 H 0.15 1.04 6.30 -52.49 -0.33 0.71 16 35 H 0.15 1.14 7.60 -52.49 -0.40 0.74 16 36 H 0.16 1.15 7.61 -52.48 -0.40 0.76 16 37 H 0.16 1.19 8.06 -52.49 -0.42 0.77 16 LS Contribution 322.68 15.07 4.86 4.86 Total: -1.00 -29.55 322.68 -8.25 -37.80 By element: Atomic # 1 Polarization: 6.90 SS G_CDS: -4.57 Total: 2.33 kcal Atomic # 6 Polarization: -11.51 SS G_CDS: -2.38 Total: -13.89 kcal Atomic # 7 Polarization: -37.90 SS G_CDS: 0.14 Total: -37.76 kcal Atomic # 8 Polarization: -8.03 SS G_CDS: -1.27 Total: -9.30 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -29.55 -8.25 -37.80 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069034851.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.541 kcal (2) G-P(sol) polarization free energy of solvation -29.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.798 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds