Wall clock time and date at job start Tue Mar 31 2020 01:58:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.47665 * 2 1 4 4 C 1.50702 * 109.47248 * 120.00732 * 2 1 3 5 5 H 1.07996 * 120.00286 * 116.67243 * 4 2 1 6 6 C 1.37882 * 119.99605 * 296.67683 * 4 2 1 7 7 N 1.31510 * 119.99983 * 352.39286 * 6 4 2 8 8 Si 1.86801 * 119.99794 * 172.67966 * 6 4 2 9 9 H 1.48501 * 109.46865 * 264.79000 * 8 6 4 10 10 H 1.48494 * 109.47181 * 24.78760 * 8 6 4 11 11 H 1.48494 * 109.47146 * 144.79188 * 8 6 4 12 12 N 1.46900 * 109.47007 * 240.00279 * 2 1 3 13 13 C 1.46903 * 111.00093 * 84.99710 * 12 2 1 14 14 C 1.52996 * 109.47201 * 180.02562 * 13 12 2 15 15 O 1.42906 * 109.46930 * 65.00677 * 14 13 12 16 16 C 1.35898 * 116.99807 * 180.02562 * 15 14 13 17 17 C 1.38739 * 120.05621 * 359.71798 * 16 15 14 18 18 C 1.38150 * 119.94058 * 179.76926 * 17 16 15 19 19 C 1.38263 * 120.05708 * 0.51334 * 18 17 16 20 20 N 1.48004 * 119.94225 * 179.72290 * 19 18 17 21 21 O 1.21800 * 119.99544 * 180.02562 * 20 19 18 22 22 O 1.21792 * 120.00318 * 0.02562 * 20 19 18 23 23 C 1.38265 * 120.11067 * 359.74180 * 19 18 17 24 24 C 1.38146 * 120.05840 * 359.97438 * 23 19 18 25 25 H 1.09003 * 109.46886 * 297.65739 * 1 2 3 26 26 H 1.08998 * 109.47467 * 57.65312 * 1 2 3 27 27 H 1.08992 * 109.47550 * 177.66107 * 1 2 3 28 28 H 0.97007 * 119.99993 * 180.27562 * 7 6 4 29 29 H 1.00903 * 110.99877 * 321.04986 * 12 2 1 30 30 H 1.08998 * 109.47502 * 300.00549 * 13 12 2 31 31 H 1.09003 * 109.46498 * 60.00243 * 13 12 2 32 32 H 1.09001 * 109.47315 * 185.00413 * 14 13 12 33 33 H 1.09002 * 109.47256 * 305.00730 * 14 13 12 34 34 H 1.08000 * 120.02607 * 0.02698 * 17 16 15 35 35 H 1.07997 * 119.96946 * 180.23155 * 18 17 16 36 36 H 1.08004 * 119.96924 * 180.02562 * 23 19 18 37 37 H 1.07999 * 120.03052 * 179.97438 * 24 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7106 1.2304 5 1 2.6082 -1.6189 1.1321 6 6 1.7567 -0.2010 2.4816 7 7 1.1874 0.9786 2.6003 8 14 2.1991 -1.1826 4.0081 9 1 1.0157 -1.9589 4.4575 10 1 3.3114 -2.1143 3.6923 11 1 2.6218 -0.2549 5.0878 12 7 2.0196 -0.6924 -1.1995 13 6 2.0823 0.2227 -2.3469 14 6 2.5949 -0.5330 -3.5745 15 8 1.6489 -1.5384 -3.9442 16 6 1.9544 -2.3060 -5.0232 17 6 3.1375 -2.0920 -5.7157 18 6 3.4479 -2.8769 -6.8094 19 6 2.5758 -3.8678 -7.2205 20 7 2.9080 -4.7031 -8.3962 21 8 2.1402 -5.5761 -8.7595 22 8 3.9491 -4.5176 -9.0005 23 6 1.3936 -4.0795 -6.5353 24 6 1.0813 -3.3013 -5.4374 25 1 -0.3633 0.4770 0.9103 26 1 -0.3634 0.5498 -0.8682 27 1 -0.3634 -1.0267 -0.0419 28 1 0.9971 1.3389 3.4807 29 1 1.4494 -1.4978 -1.4101 30 1 1.0870 0.6165 -2.5525 31 1 2.7588 1.0462 -2.1182 32 1 2.7259 0.1643 -4.4020 33 1 3.5504 -1.0020 -3.3398 34 1 3.8171 -1.3153 -5.3974 35 1 4.3704 -2.7132 -7.3464 36 1 0.7142 -4.8546 -6.8582 37 1 0.1576 -3.4668 -4.9028 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069034851.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:58:07 Heat of formation + Delta-G solvation = -36.890923 kcal Electronic energy + Delta-G solvation = -20744.891892 eV Core-core repulsion = 17297.103356 eV Total energy + Delta-G solvation = -3447.788536 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -43.20908 -41.42817 -39.00497 -37.64343 -37.62604 -34.67961 -32.73964 -32.31910 -31.42886 -28.47401 -27.21729 -27.05253 -24.71371 -23.50791 -22.62121 -22.10890 -20.37545 -19.71823 -19.40622 -18.57211 -18.42104 -17.30281 -17.10204 -16.67947 -16.07499 -15.79263 -15.28877 -15.22674 -14.85249 -14.53039 -14.27092 -14.03606 -13.63158 -13.27724 -13.09375 -12.83880 -12.76297 -12.69155 -12.44566 -12.29132 -12.28287 -12.25746 -12.16106 -11.99413 -11.71099 -11.05517 -10.50502 -10.47700 -9.80881 -9.01773 -8.13001 -6.20674 -1.17385 -0.08687 0.32862 0.43392 1.42069 1.43988 1.54176 1.92138 2.24962 2.43621 3.17649 3.33306 3.47181 3.55615 3.60774 3.84978 4.02550 4.20000 4.26497 4.38388 4.41833 4.63853 4.68658 4.73019 4.78494 4.83862 4.87479 4.94565 5.06658 5.10650 5.36203 5.38832 5.66099 5.75307 6.08438 6.22266 6.52390 6.62163 6.81289 6.93489 7.48406 8.94682 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.034913 B = 0.002721 C = 0.002670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 801.804922 B =10287.761845 C =10485.004035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.214 3.786 3 H 0.010 0.990 4 C -0.516 4.516 5 H 0.054 0.946 6 C 0.011 3.989 7 N -0.923 5.923 8 Si 0.955 3.045 9 H -0.277 1.277 10 H -0.269 1.269 11 H -0.285 1.285 12 N -0.687 5.687 13 C 0.057 3.943 14 C 0.062 3.938 15 O -0.311 6.311 16 C 0.188 3.812 17 C -0.205 4.205 18 C -0.009 4.009 19 C -0.109 4.109 20 N 0.040 4.960 21 O -0.190 6.190 22 O -0.189 6.189 23 C -0.011 4.011 24 C -0.155 4.155 25 H 0.047 0.953 26 H 0.030 0.970 27 H 0.035 0.965 28 H 0.261 0.739 29 H 0.335 0.665 30 H 0.030 0.970 31 H 0.090 0.910 32 H 0.103 0.897 33 H 0.085 0.915 34 H 0.175 0.825 35 H 0.169 0.831 36 H 0.171 0.829 37 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.583 -4.903 -18.034 18.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.105 3.895 3 H 0.028 0.972 4 C -0.554 4.554 5 H 0.073 0.927 6 C -0.188 4.188 7 N -0.563 5.563 8 Si 0.781 3.219 9 H -0.203 1.203 10 H -0.194 1.194 11 H -0.211 1.211 12 N -0.318 5.318 13 C -0.072 4.072 14 C -0.012 4.012 15 O -0.223 6.223 16 C 0.140 3.860 17 C -0.225 4.225 18 C -0.028 4.028 19 C -0.194 4.194 20 N 0.552 4.448 21 O -0.401 6.401 22 O -0.400 6.400 23 C -0.030 4.030 24 C -0.174 4.174 25 H 0.066 0.934 26 H 0.049 0.951 27 H 0.054 0.946 28 H 0.070 0.930 29 H 0.152 0.848 30 H 0.048 0.952 31 H 0.109 0.891 32 H 0.121 0.879 33 H 0.103 0.897 34 H 0.193 0.807 35 H 0.186 0.814 36 H 0.189 0.811 37 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 1.884 -4.291 -17.060 17.692 hybrid contribution -0.632 -0.285 0.478 0.842 sum 1.252 -4.576 -16.582 17.247 Atomic orbital electron populations 1.22196 1.00200 0.99082 0.99711 1.18940 0.89768 0.93153 0.87593 0.97247 1.21452 1.33076 1.09774 0.91136 0.92731 1.25680 0.95564 0.95670 1.01838 1.70052 1.44676 1.17460 1.24153 0.85587 0.78483 0.78613 0.79207 1.20303 1.19377 1.21130 1.60744 1.57948 1.09663 1.03428 1.22066 1.00209 0.95574 0.89368 1.23251 0.91849 0.89022 0.97121 1.86157 1.47700 1.45887 1.42518 1.19660 0.92549 0.88832 0.84972 1.21556 0.98596 1.04607 0.97695 1.21016 0.98342 0.89307 0.94094 1.21164 1.02328 1.02012 0.93854 1.43816 0.99450 0.99945 1.01632 1.94512 1.46954 1.26966 1.71665 1.94506 1.14193 1.75136 1.56211 1.20981 0.93230 0.97392 0.91425 1.20668 1.02364 0.96048 0.98351 0.93435 0.95147 0.94575 0.93009 0.84829 0.95213 0.89149 0.87947 0.89666 0.80733 0.81381 0.81139 0.81390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.90 9.01 71.98 0.65 -6.25 16 2 C 0.21 10.19 2.46 44.17 0.11 10.30 16 3 H 0.01 0.51 7.79 -2.39 -0.02 0.49 16 4 C -0.52 -27.66 8.79 25.60 0.23 -27.44 16 5 H 0.05 2.95 7.82 -2.91 -0.02 2.93 16 6 C 0.01 0.59 5.21 84.66 0.44 1.03 16 7 N -0.92 -52.24 11.92 21.45 0.26 -51.99 16 8 Si 0.95 42.93 29.54 68.60 2.03 44.96 16 9 H -0.28 -12.17 7.11 99.48 0.71 -11.47 16 10 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 11 H -0.29 -12.65 7.11 99.48 0.71 -11.94 16 12 N -0.69 -26.06 6.23 -495.45 -3.09 -29.15 16 13 C 0.06 1.63 5.90 86.30 0.51 2.14 16 14 C 0.06 1.20 5.08 71.98 0.37 1.57 16 15 O -0.31 -6.62 9.66 -92.40 -0.89 -7.51 16 16 C 0.19 3.32 6.69 22.51 0.15 3.47 16 17 C -0.21 -2.94 9.04 22.37 0.20 -2.74 16 18 C -0.01 -0.13 9.55 22.25 0.21 0.08 16 19 C -0.11 -2.11 6.85 36.39 0.25 -1.86 16 20 N 0.04 0.97 4.45 -46.44 -0.21 0.76 16 21 O -0.19 -4.90 18.44 18.89 0.35 -4.56 16 22 O -0.19 -4.86 18.44 18.90 0.35 -4.51 16 23 C -0.01 -0.18 9.55 22.25 0.21 0.03 16 24 C -0.16 -2.47 9.99 22.37 0.22 -2.25 16 25 H 0.05 2.42 6.59 -2.39 -0.02 2.41 16 26 H 0.03 1.20 7.51 -2.39 -0.02 1.18 16 27 H 0.04 1.54 8.09 -2.39 -0.02 1.52 16 28 H 0.26 14.08 8.31 -92.70 -0.77 13.31 16 29 H 0.33 12.27 8.01 -89.69 -0.72 11.55 16 30 H 0.03 0.87 7.48 -2.39 -0.02 0.85 16 31 H 0.09 2.56 8.06 -2.39 -0.02 2.54 16 32 H 0.10 1.30 7.65 -2.39 -0.02 1.28 16 33 H 0.09 1.58 7.67 -2.39 -0.02 1.56 16 34 H 0.18 1.68 6.30 -2.91 -0.02 1.66 16 35 H 0.17 2.09 7.60 -2.91 -0.02 2.07 16 36 H 0.17 2.23 7.61 -2.91 -0.02 2.21 16 37 H 0.17 2.20 8.06 -2.91 -0.02 2.18 16 Total: -1.00 -63.41 322.68 2.72 -60.69 By element: Atomic # 1 Polarization: 12.84 SS G_CDS: 0.38 Total: 13.22 kcal Atomic # 6 Polarization: -25.46 SS G_CDS: 3.55 Total: -21.91 kcal Atomic # 7 Polarization: -77.34 SS G_CDS: -3.04 Total: -80.38 kcal Atomic # 8 Polarization: -16.38 SS G_CDS: -0.20 Total: -16.57 kcal Atomic # 14 Polarization: 42.93 SS G_CDS: 2.03 Total: 44.96 kcal Total: -63.41 2.72 -60.69 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069034851.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.799 kcal (2) G-P(sol) polarization free energy of solvation -63.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.690 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds