Wall clock time and date at job start Tue Mar 31 2020 02:03:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 N 1.46500 * 109.47473 * 239.99757 * 2 1 3 5 5 C 1.34780 * 119.99910 * 85.00011 * 4 2 1 6 6 O 1.21700 * 119.99856 * 359.97438 * 5 4 2 7 7 C 1.46652 * 120.00085 * 180.02562 * 5 4 2 8 8 C 1.36543 * 125.98863 * 179.97438 * 7 5 4 9 9 C 1.40366 * 106.70613 * 179.97438 * 8 7 5 10 10 C 1.35126 * 107.11765 * 0.02562 * 9 8 7 11 11 O 1.33932 * 108.76493 * 359.75437 * 10 9 8 12 12 C 1.50708 * 109.47141 * 119.99670 * 2 1 3 13 13 O 1.21282 * 119.99544 * 119.99884 * 12 2 1 14 14 N 1.34774 * 120.00011 * 300.00244 * 12 2 1 15 15 C 1.46502 * 120.00006 * 359.97438 * 14 12 2 16 16 C 1.46500 * 119.99881 * 179.97438 * 14 12 2 17 17 C 1.50700 * 109.47003 * 90.00049 * 16 14 12 18 18 H 1.08004 * 120.00201 * 359.97438 * 17 16 14 19 19 C 1.37874 * 119.99836 * 180.02562 * 17 16 14 20 20 N 1.31516 * 120.00342 * 0.02562 * 19 17 16 21 21 Si 1.86804 * 119.99838 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47087 * 359.97438 * 21 19 17 23 23 H 1.48503 * 109.47243 * 120.00178 * 21 19 17 24 24 H 1.48498 * 109.47110 * 239.99747 * 21 19 17 25 25 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 27 27 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 28 28 H 0.96994 * 119.99975 * 265.00388 * 4 2 1 29 29 H 1.07999 * 126.64846 * 359.97438 * 8 7 5 30 30 H 1.08000 * 126.43867 * 180.02562 * 9 8 7 31 31 H 1.07998 * 125.61581 * 180.02562 * 10 9 8 32 32 H 1.09005 * 109.46966 * 89.99945 * 15 14 12 33 33 H 1.09001 * 109.47307 * 210.00012 * 15 14 12 34 34 H 1.09000 * 109.47042 * 329.99997 * 15 14 12 35 35 H 1.08998 * 109.47195 * 209.99758 * 16 14 12 36 36 H 1.09004 * 109.46838 * 330.00163 * 16 14 12 37 37 H 0.96991 * 120.00182 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1961 5 6 2.1471 -0.0183 -2.3571 6 8 1.8572 1.1624 -2.4119 7 6 2.6355 -0.7098 -3.5546 8 6 2.8117 -0.1510 -4.7880 9 6 3.2917 -1.1687 -5.6272 10 6 3.3857 -2.2899 -4.8789 11 8 2.9943 -2.0082 -3.6295 12 6 2.0323 -0.7104 1.2306 13 8 2.7296 -1.6965 1.1192 14 7 1.7067 -0.2499 2.4546 15 6 0.8649 0.9416 2.5890 16 6 2.1946 -0.9408 3.6508 17 6 3.5223 -0.3578 4.0612 18 1 3.9592 0.4467 3.4881 19 6 4.1797 -0.8520 5.1677 20 7 3.6485 -1.8326 5.8648 21 14 5.8251 -0.1288 5.6769 22 1 6.2025 0.9548 4.7343 23 1 5.7189 0.4243 7.0509 24 1 6.8623 -1.1912 5.6499 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 0.5139 0.8900 28 1 2.2490 -1.6317 -1.1525 29 1 2.6191 0.8751 -5.0644 30 1 3.5393 -1.0734 -6.6741 31 1 3.7252 -3.2534 -5.2295 32 1 -0.1833 0.6440 2.6221 33 1 1.1227 1.4668 3.5086 34 1 1.0288 1.6003 1.7362 35 1 1.4766 -0.8152 4.4612 36 1 2.3154 -2.0021 3.4335 37 1 4.1108 -2.1800 6.6435 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000072615604.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:03:24 Heat of formation + Delta-G solvation = -46.157226 kcal Electronic energy + Delta-G solvation = -21647.398421 eV Core-core repulsion = 18199.208068 eV Total energy + Delta-G solvation = -3448.190353 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.83559 -40.07248 -38.71051 -35.17054 -34.88711 -33.25668 -32.72586 -31.23815 -29.57649 -27.63009 -26.24132 -24.61090 -23.46840 -22.08153 -21.75031 -20.33438 -19.32631 -18.31672 -16.78229 -16.56390 -16.48816 -16.28261 -15.64659 -15.23570 -14.84189 -14.55420 -14.29508 -13.72451 -13.51853 -13.19404 -13.17820 -12.90617 -12.84454 -12.40243 -12.19141 -12.01973 -11.55030 -11.45348 -11.16723 -10.90332 -10.63209 -10.37281 -10.26115 -10.19814 -9.66113 -9.36940 -8.99039 -8.81590 -8.47562 -7.76108 -6.08470 -4.13376 0.91527 2.16219 2.51687 3.04290 3.10223 3.24208 3.28136 3.36062 3.41018 3.88898 4.41886 4.51608 4.69722 4.79096 4.90685 5.16161 5.24193 5.26688 5.42640 5.50917 5.55907 5.67954 5.69953 5.79402 5.88807 6.06356 6.10748 6.24796 6.29739 6.64473 6.95557 7.35570 7.41419 7.47793 7.87410 8.00512 8.17550 8.27649 8.78995 8.95260 9.51993 10.99700 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.022177 B = 0.003940 C = 0.003630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1262.288858 B = 7104.221857 C = 7712.000184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.122 3.878 3 H 0.112 0.888 4 N -0.695 5.695 5 C 0.605 3.395 6 O -0.526 6.526 7 C -0.073 4.073 8 C -0.123 4.123 9 C -0.228 4.228 10 C -0.006 4.006 11 O -0.160 6.160 12 C 0.502 3.498 13 O -0.537 6.537 14 N -0.593 5.593 15 C 0.076 3.924 16 C 0.245 3.755 17 C -0.528 4.528 18 H 0.058 0.942 19 C 0.061 3.939 20 N -0.894 5.894 21 Si 0.899 3.101 22 H -0.273 1.273 23 H -0.283 1.283 24 H -0.283 1.283 25 H 0.062 0.938 26 H 0.068 0.932 27 H 0.086 0.914 28 H 0.415 0.585 29 H 0.160 0.840 30 H 0.156 0.844 31 H 0.210 0.790 32 H 0.052 0.948 33 H 0.077 0.923 34 H 0.062 0.938 35 H 0.035 0.965 36 H 0.045 0.955 37 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.849 2.061 -18.653 19.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.014 3.986 3 H 0.130 0.870 4 N -0.347 5.347 5 C 0.391 3.609 6 O -0.404 6.404 7 C -0.125 4.125 8 C -0.144 4.144 9 C -0.247 4.247 10 C -0.076 4.076 11 O -0.055 6.055 12 C 0.287 3.713 13 O -0.415 6.415 14 N -0.325 5.325 15 C -0.068 4.068 16 C 0.126 3.874 17 C -0.567 4.567 18 H 0.077 0.923 19 C -0.141 4.141 20 N -0.533 5.533 21 Si 0.726 3.274 22 H -0.198 1.198 23 H -0.209 1.209 24 H -0.209 1.209 25 H 0.081 0.919 26 H 0.087 0.913 27 H 0.105 0.895 28 H 0.253 0.747 29 H 0.178 0.822 30 H 0.174 0.826 31 H 0.227 0.773 32 H 0.070 0.930 33 H 0.096 0.904 34 H 0.080 0.920 35 H 0.053 0.947 36 H 0.063 0.937 37 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -5.679 2.059 -18.242 19.216 hybrid contribution 1.153 -0.007 0.166 1.165 sum -4.526 2.053 -18.076 18.746 Atomic orbital electron populations 1.22367 0.93025 1.03336 1.04027 1.20899 0.95643 0.98089 0.83976 0.86999 1.45668 1.65619 1.15211 1.08246 1.16503 0.77721 0.85640 0.81055 1.90867 1.51298 1.14127 1.84142 1.22071 1.10578 0.82704 0.97148 1.21960 1.00051 1.01205 0.91161 1.21855 1.08186 0.92879 1.01802 1.24442 1.00957 1.00948 0.81289 1.84120 1.63518 1.26593 1.31243 1.20175 0.81299 0.85277 0.84548 1.90674 1.38011 1.26834 1.85983 1.48073 1.49285 1.28131 1.06978 1.21895 0.93896 0.88010 1.02983 1.19355 0.94396 0.93714 0.79930 1.21465 1.04773 1.19167 1.11294 0.92343 1.24934 0.98001 0.94913 0.96222 1.69936 1.38992 1.26014 1.18371 0.86431 0.83630 0.79081 0.78227 1.19775 1.20897 1.20854 0.91865 0.91288 0.89549 0.74722 0.82205 0.82619 0.77344 0.92964 0.90442 0.91986 0.94666 0.93699 0.92714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.16 9.12 37.16 0.34 -1.82 16 2 C 0.12 1.94 2.18 -69.08 -0.15 1.79 16 3 H 0.11 1.78 6.84 -51.93 -0.35 1.43 16 4 N -0.70 -10.83 4.95 -56.25 -0.28 -11.11 16 5 C 0.60 9.28 7.75 -12.86 -0.10 9.18 16 6 O -0.53 -9.01 16.53 5.19 0.09 -8.92 16 7 C -0.07 -0.97 7.13 -36.80 -0.26 -1.24 16 8 C -0.12 -1.39 10.62 -39.39 -0.42 -1.81 16 9 C -0.23 -2.01 10.87 -39.89 -0.43 -2.44 16 10 C -0.01 -0.05 12.08 29.63 0.36 0.30 16 11 O -0.16 -1.95 10.40 5.00 0.05 -1.90 16 12 C 0.50 10.22 7.14 -10.98 -0.08 10.14 16 13 O -0.54 -13.02 15.42 5.56 0.09 -12.93 16 14 N -0.59 -12.22 2.86 -182.95 -0.52 -12.74 16 15 C 0.08 1.15 8.80 59.85 0.53 1.68 16 16 C 0.24 6.28 5.16 -5.19 -0.03 6.25 16 17 C -0.53 -14.87 9.39 -34.44 -0.32 -15.19 16 18 H 0.06 1.66 7.81 -52.48 -0.41 1.25 16 19 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 20 N -0.89 -26.33 13.29 55.43 0.74 -25.59 16 21 Si 0.90 21.83 29.54 -169.99 -5.02 16.81 16 22 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 23 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 24 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 25 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 26 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 27 H 0.09 0.98 4.53 -51.93 -0.24 0.75 16 28 H 0.42 6.50 7.55 -40.82 -0.31 6.19 16 29 H 0.16 1.64 8.06 -52.49 -0.42 1.21 16 30 H 0.16 0.92 8.06 -52.49 -0.42 0.50 16 31 H 0.21 0.91 8.06 -52.49 -0.42 0.49 16 32 H 0.05 0.66 6.95 -51.93 -0.36 0.30 16 33 H 0.08 1.21 8.07 -51.93 -0.42 0.79 16 34 H 0.06 0.80 6.01 -51.93 -0.31 0.49 16 35 H 0.04 0.91 8.07 -51.93 -0.42 0.49 16 36 H 0.04 1.29 7.42 -51.93 -0.39 0.91 16 37 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 LS Contribution 322.01 15.07 4.85 4.85 Total: -1.00 -34.30 322.01 -5.13 -39.43 By element: Atomic # 1 Polarization: 8.06 SS G_CDS: -4.45 Total: 3.61 kcal Atomic # 6 Polarization: 9.15 SS G_CDS: -0.67 Total: 8.48 kcal Atomic # 7 Polarization: -49.37 SS G_CDS: -0.06 Total: -49.44 kcal Atomic # 8 Polarization: -23.97 SS G_CDS: 0.22 Total: -23.75 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -34.30 -5.13 -39.43 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072615604.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.724 kcal (2) G-P(sol) polarization free energy of solvation -34.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.433 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds