Wall clock time and date at job start Tue Mar 31 2020 02:03:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 N 1.46500 * 109.47473 * 239.99757 * 2 1 3 5 5 C 1.34780 * 119.99910 * 85.00011 * 4 2 1 6 6 O 1.21700 * 119.99856 * 359.97438 * 5 4 2 7 7 C 1.46652 * 120.00085 * 180.02562 * 5 4 2 8 8 C 1.36543 * 125.98863 * 179.97438 * 7 5 4 9 9 C 1.40366 * 106.70613 * 179.97438 * 8 7 5 10 10 C 1.35126 * 107.11765 * 0.02562 * 9 8 7 11 11 O 1.33932 * 108.76493 * 359.75437 * 10 9 8 12 12 C 1.50708 * 109.47141 * 119.99670 * 2 1 3 13 13 O 1.21282 * 119.99544 * 119.99884 * 12 2 1 14 14 N 1.34774 * 120.00011 * 300.00244 * 12 2 1 15 15 C 1.46502 * 120.00006 * 359.97438 * 14 12 2 16 16 C 1.46500 * 119.99881 * 179.97438 * 14 12 2 17 17 C 1.50700 * 109.47003 * 90.00049 * 16 14 12 18 18 H 1.08004 * 120.00201 * 359.97438 * 17 16 14 19 19 C 1.37874 * 119.99836 * 180.02562 * 17 16 14 20 20 N 1.31516 * 120.00342 * 0.02562 * 19 17 16 21 21 Si 1.86804 * 119.99838 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47087 * 359.97438 * 21 19 17 23 23 H 1.48503 * 109.47243 * 120.00178 * 21 19 17 24 24 H 1.48498 * 109.47110 * 239.99747 * 21 19 17 25 25 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 27 27 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 28 28 H 0.96994 * 119.99975 * 265.00388 * 4 2 1 29 29 H 1.07999 * 126.64846 * 359.97438 * 8 7 5 30 30 H 1.08000 * 126.43867 * 180.02562 * 9 8 7 31 31 H 1.07998 * 125.61581 * 180.02562 * 10 9 8 32 32 H 1.09005 * 109.46966 * 89.99945 * 15 14 12 33 33 H 1.09001 * 109.47307 * 210.00012 * 15 14 12 34 34 H 1.09000 * 109.47042 * 329.99997 * 15 14 12 35 35 H 1.08998 * 109.47195 * 209.99758 * 16 14 12 36 36 H 1.09004 * 109.46838 * 330.00163 * 16 14 12 37 37 H 0.96991 * 120.00182 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1961 5 6 2.1471 -0.0183 -2.3571 6 8 1.8572 1.1624 -2.4119 7 6 2.6355 -0.7098 -3.5546 8 6 2.8117 -0.1510 -4.7880 9 6 3.2917 -1.1687 -5.6272 10 6 3.3857 -2.2899 -4.8789 11 8 2.9943 -2.0082 -3.6295 12 6 2.0323 -0.7104 1.2306 13 8 2.7296 -1.6965 1.1192 14 7 1.7067 -0.2499 2.4546 15 6 0.8649 0.9416 2.5890 16 6 2.1946 -0.9408 3.6508 17 6 3.5223 -0.3578 4.0612 18 1 3.9592 0.4467 3.4881 19 6 4.1797 -0.8520 5.1677 20 7 3.6485 -1.8326 5.8648 21 14 5.8251 -0.1288 5.6769 22 1 6.2025 0.9548 4.7343 23 1 5.7189 0.4243 7.0509 24 1 6.8623 -1.1912 5.6499 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 0.5139 0.8900 28 1 2.2490 -1.6317 -1.1525 29 1 2.6191 0.8751 -5.0644 30 1 3.5393 -1.0734 -6.6741 31 1 3.7252 -3.2534 -5.2295 32 1 -0.1833 0.6440 2.6221 33 1 1.1227 1.4668 3.5086 34 1 1.0288 1.6003 1.7362 35 1 1.4766 -0.8152 4.4612 36 1 2.3154 -2.0021 3.4335 37 1 4.1108 -2.1800 6.6435 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000072615604.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:03:24 Heat of formation + Delta-G solvation = -71.305938 kcal Electronic energy + Delta-G solvation = -21648.488951 eV Core-core repulsion = 18199.208068 eV Total energy + Delta-G solvation = -3449.280883 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -43.66146 -41.46312 -40.11482 -36.81509 -36.27004 -34.79041 -34.05452 -32.48221 -30.59607 -29.41152 -27.69858 -25.99520 -24.99242 -23.31928 -22.68001 -21.40451 -20.61664 -19.58798 -18.71932 -17.88258 -17.68301 -17.38907 -17.01774 -16.73990 -16.45911 -15.96346 -15.64515 -15.14189 -14.74640 -14.38824 -14.21834 -14.11465 -13.93538 -13.58952 -13.55263 -13.48627 -13.32764 -12.92442 -12.76020 -12.63258 -12.42607 -12.23044 -11.70580 -11.55077 -11.05380 -10.79028 -10.66268 -10.40326 -9.68419 -9.50135 -8.24817 -6.39164 -0.00746 1.35518 1.37616 1.41165 1.49036 1.55933 1.62933 1.97957 2.05362 2.33343 2.45293 3.05257 3.41216 3.67943 3.95895 3.97028 4.03363 4.10656 4.34083 4.56072 4.61644 4.68403 4.75299 4.89339 4.89978 4.94310 4.96809 5.12216 5.17601 5.22225 5.40213 5.51202 5.76897 5.83087 6.03011 6.29736 6.58384 6.70451 6.85914 7.18736 7.34896 8.82492 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.022177 B = 0.003940 C = 0.003630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1262.288858 B = 7104.221857 C = 7712.000184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.134 3.866 3 H 0.116 0.884 4 N -0.700 5.700 5 C 0.606 3.394 6 O -0.551 6.551 7 C -0.115 4.115 8 C -0.117 4.117 9 C -0.231 4.231 10 C 0.007 3.993 11 O -0.179 6.179 12 C 0.496 3.504 13 O -0.586 6.586 14 N -0.598 5.598 15 C 0.068 3.932 16 C 0.259 3.741 17 C -0.545 4.545 18 H 0.051 0.949 19 C 0.010 3.990 20 N -0.926 5.926 21 Si 0.966 3.034 22 H -0.270 1.270 23 H -0.268 1.268 24 H -0.281 1.281 25 H 0.062 0.938 26 H 0.079 0.921 27 H 0.104 0.896 28 H 0.413 0.587 29 H 0.166 0.834 30 H 0.189 0.811 31 H 0.253 0.747 32 H 0.085 0.915 33 H 0.072 0.928 34 H 0.090 0.910 35 H 0.031 0.969 36 H 0.003 0.997 37 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.747 2.899 -20.329 21.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.026 3.974 3 H 0.133 0.867 4 N -0.352 5.352 5 C 0.394 3.606 6 O -0.432 6.432 7 C -0.166 4.166 8 C -0.137 4.137 9 C -0.250 4.250 10 C -0.062 4.062 11 O -0.074 6.074 12 C 0.283 3.717 13 O -0.467 6.467 14 N -0.329 5.329 15 C -0.073 4.073 16 C 0.138 3.862 17 C -0.584 4.584 18 H 0.069 0.931 19 C -0.189 4.189 20 N -0.565 5.565 21 Si 0.791 3.209 22 H -0.195 1.195 23 H -0.193 1.193 24 H -0.207 1.207 25 H 0.081 0.919 26 H 0.098 0.902 27 H 0.123 0.877 28 H 0.250 0.750 29 H 0.184 0.816 30 H 0.206 0.794 31 H 0.269 0.731 32 H 0.103 0.897 33 H 0.091 0.909 34 H 0.108 0.892 35 H 0.049 0.951 36 H 0.021 0.979 37 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -5.615 2.936 -19.926 20.909 hybrid contribution 1.131 -0.335 0.584 1.317 sum -4.483 2.601 -19.342 20.024 Atomic orbital electron populations 1.22344 0.90227 1.03817 1.05425 1.20835 0.97581 0.97142 0.81867 0.86654 1.45725 1.65991 1.15087 1.08354 1.16732 0.77071 0.85448 0.81366 1.90830 1.52643 1.15018 1.84693 1.21791 1.14025 0.83742 0.97075 1.22283 0.98539 1.02049 0.90858 1.22248 1.07722 0.91891 1.03111 1.25434 0.98310 1.02630 0.79826 1.84109 1.64089 1.26086 1.33145 1.20967 0.80367 0.84784 0.85604 1.90639 1.40157 1.29105 1.86808 1.48048 1.49746 1.29337 1.05736 1.22233 0.94682 0.86371 1.04038 1.18836 0.93816 0.91852 0.81686 1.21727 1.05979 1.19175 1.11525 0.93074 1.25810 1.01671 0.95213 0.96211 1.70039 1.40587 1.27052 1.18849 0.85392 0.78877 0.78261 0.78416 1.19450 1.19259 1.20722 0.91893 0.90168 0.87729 0.74999 0.81639 0.79410 0.73146 0.89656 0.90949 0.89197 0.95072 0.97913 0.92319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.83 9.12 71.98 0.66 -3.17 16 2 C 0.13 4.21 2.18 44.25 0.10 4.31 16 3 H 0.12 3.58 6.84 -2.39 -0.02 3.56 16 4 N -0.70 -22.12 4.95 -450.08 -2.23 -24.34 16 5 C 0.61 18.69 7.75 86.44 0.67 19.36 16 6 O -0.55 -18.82 16.53 -4.35 -0.07 -18.89 16 7 C -0.11 -3.03 7.13 24.07 0.17 -2.86 16 8 C -0.12 -2.48 10.62 22.39 0.24 -2.24 16 9 C -0.23 -3.40 10.87 22.07 0.24 -3.16 16 10 C 0.01 0.11 12.08 67.10 0.81 0.92 16 11 O -0.18 -4.20 10.40 -5.03 -0.05 -4.26 16 12 C 0.50 20.56 7.14 87.66 0.63 21.19 16 13 O -0.59 -29.66 15.42 -3.04 -0.05 -29.71 16 14 N -0.60 -24.88 2.86 -851.10 -2.43 -27.31 16 15 C 0.07 1.97 8.80 127.77 1.12 3.10 16 16 C 0.26 13.74 5.16 85.63 0.44 14.19 16 17 C -0.55 -31.37 9.39 25.60 0.24 -31.13 16 18 H 0.05 2.94 7.81 -2.91 -0.02 2.92 16 19 C 0.01 0.59 5.46 84.65 0.46 1.05 16 20 N -0.93 -55.45 13.29 21.45 0.28 -55.16 16 21 Si 0.97 45.00 29.54 68.60 2.03 47.03 16 22 H -0.27 -12.33 7.11 99.48 0.71 -11.63 16 23 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 24 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 25 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 26 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 27 H 0.10 2.08 4.53 -2.38 -0.01 2.07 16 28 H 0.41 13.43 7.55 -92.71 -0.70 12.73 16 29 H 0.17 3.20 8.06 -2.91 -0.02 3.18 16 30 H 0.19 1.46 8.06 -2.91 -0.02 1.43 16 31 H 0.25 1.15 8.06 -2.91 -0.02 1.12 16 32 H 0.09 1.92 6.95 -2.38 -0.02 1.91 16 33 H 0.07 2.18 8.07 -2.39 -0.02 2.16 16 34 H 0.09 2.10 6.01 -2.39 -0.01 2.09 16 35 H 0.03 1.66 8.07 -2.39 -0.02 1.64 16 36 H 0.00 0.17 7.42 -2.38 -0.02 0.15 16 37 H 0.27 14.99 8.31 -92.71 -0.77 14.22 16 Total: -1.00 -77.26 322.01 3.66 -73.60 By element: Atomic # 1 Polarization: 17.10 SS G_CDS: 0.40 Total: 17.50 kcal Atomic # 6 Polarization: 15.76 SS G_CDS: 5.78 Total: 21.54 kcal Atomic # 7 Polarization: -102.44 SS G_CDS: -4.37 Total: -106.81 kcal Atomic # 8 Polarization: -52.68 SS G_CDS: -0.17 Total: -52.85 kcal Atomic # 14 Polarization: 45.00 SS G_CDS: 2.03 Total: 47.03 kcal Total: -77.26 3.66 -73.60 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072615604.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.289 kcal (2) G-P(sol) polarization free energy of solvation -77.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.595 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds