Wall clock time and date at job start Tue Mar 31 2020 02:09:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46499 * 109.47324 * 2 1 4 4 C 1.46507 * 120.00232 * 270.00102 * 3 2 1 5 5 C 1.50703 * 109.47140 * 270.00069 * 4 3 2 6 6 H 1.08000 * 119.99950 * 359.97438 * 5 4 3 7 7 C 1.37877 * 119.99928 * 179.97438 * 5 4 3 8 8 N 1.31521 * 119.99796 * 0.02562 * 7 5 4 9 9 Si 1.86793 * 119.99893 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47553 * 359.97438 * 9 7 5 11 11 H 1.48495 * 109.47407 * 120.00178 * 9 7 5 12 12 H 1.48502 * 109.46814 * 239.99814 * 9 7 5 13 13 C 1.34775 * 119.99933 * 90.00085 * 3 2 1 14 14 O 1.21279 * 120.00063 * 179.97438 * 13 3 2 15 15 C 1.50700 * 120.00105 * 0.02562 * 13 3 2 16 16 N 1.46493 * 109.47225 * 179.97438 * 15 13 3 17 17 C 1.34778 * 119.99793 * 179.97438 * 16 15 13 18 18 O 1.21695 * 120.00192 * 359.97438 * 17 16 15 19 19 C 1.46661 * 119.99796 * 179.97438 * 17 16 15 20 20 C 1.36547 * 125.98711 * 179.97438 * 19 17 16 21 21 C 1.40360 * 106.70833 * 180.02562 * 20 19 17 22 22 C 1.35131 * 107.11647 * 359.97438 * 21 20 19 23 23 O 1.33934 * 108.76477 * 0.02562 * 22 21 20 24 24 H 1.08998 * 109.47629 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.46924 * 300.00276 * 1 2 3 26 26 H 1.09004 * 109.47076 * 59.99193 * 1 2 3 27 27 H 1.09008 * 109.46857 * 240.00329 * 2 1 3 28 28 H 1.08997 * 109.47368 * 120.00500 * 2 1 3 29 29 H 1.08998 * 109.46434 * 30.00235 * 4 3 2 30 30 H 1.08995 * 109.46869 * 150.00062 * 4 3 2 31 31 H 0.96996 * 119.99909 * 180.02562 * 8 7 5 32 32 H 1.08997 * 109.47342 * 59.99110 * 15 13 3 33 33 H 1.09001 * 109.46775 * 299.99724 * 15 13 3 34 34 H 0.96998 * 120.00266 * 359.97438 * 16 15 13 35 35 H 1.08005 * 126.64485 * 0.02562 * 20 19 17 36 36 H 1.08003 * 126.44294 * 180.02562 * 21 20 19 37 37 H 1.07997 * 125.61851 * 180.26772 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0719 -1.2688 5 6 3.6858 1.8350 -1.7038 6 1 4.3429 1.2308 -1.0959 7 6 4.1491 2.3897 -2.8780 8 7 3.3491 3.1258 -3.6181 9 14 5.9131 2.0955 -3.4176 10 1 6.6008 1.2405 -2.4171 11 1 5.9201 1.4164 -4.7382 12 1 6.6209 3.3965 -3.5264 13 6 2.2430 2.0165 1.1672 14 8 2.6477 3.1598 1.1672 15 6 1.9924 1.3059 2.4723 16 7 2.3102 2.2032 3.5858 17 6 2.1605 1.7796 4.8565 18 8 1.7608 0.6518 5.0788 19 6 2.4792 2.6777 5.9712 20 6 2.3728 2.3776 7.2990 21 6 2.7779 3.5212 8.0049 22 6 3.1103 4.4572 7.0887 23 8 2.9287 3.9452 5.8644 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5140 -0.8899 27 1 1.8933 -0.5138 -0.8901 28 1 1.8933 -0.5139 0.8899 29 1 1.5816 1.6878 -2.0283 30 1 2.0956 3.1410 -1.1383 31 1 3.6749 3.5157 -4.4443 32 1 2.6227 0.4186 2.5298 33 1 0.9445 1.0114 2.5302 34 1 2.6284 3.1022 3.4086 35 1 2.0411 1.4417 7.7238 36 1 2.8175 3.6319 9.0785 37 1 3.4675 5.4526 7.3075 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084408399.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:09:06 Heat of formation + Delta-G solvation = -54.686052 kcal Electronic energy + Delta-G solvation = -21375.967508 eV Core-core repulsion = 17927.407317 eV Total energy + Delta-G solvation = -3448.560191 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.84646 -39.86392 -38.76697 -35.56621 -34.49659 -33.22323 -32.82825 -30.48852 -30.15762 -28.45113 -26.43290 -23.50536 -23.06993 -22.29177 -21.88079 -20.42004 -19.24852 -18.18430 -16.76526 -16.55304 -16.46722 -16.32851 -15.74219 -15.43345 -15.10413 -14.43546 -14.27403 -13.77802 -13.44328 -13.26307 -13.19240 -13.00981 -12.86093 -12.68029 -12.07531 -12.05672 -11.63241 -11.26198 -10.93706 -10.79402 -10.60695 -10.44016 -10.27386 -10.18553 -9.68271 -9.28141 -9.15637 -8.84397 -8.48181 -7.80073 -6.09134 -4.14050 0.90022 2.15006 2.50798 3.05542 3.07036 3.20351 3.27353 3.35297 3.39684 3.86010 4.41005 4.52199 4.68505 4.80080 4.88454 5.25772 5.26138 5.37964 5.41713 5.50494 5.54901 5.60644 5.69400 5.75347 6.00222 6.09492 6.18485 6.20143 6.46079 6.63053 6.96070 7.35317 7.40332 7.46758 7.86607 7.97676 8.16960 8.26978 8.76752 8.93913 9.51230 10.99066 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.020859 B = 0.003840 C = 0.003440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1342.018886 B = 7290.451499 C = 8137.432031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.101 3.899 3 N -0.589 5.589 4 C 0.246 3.754 5 C -0.528 4.528 6 H 0.058 0.942 7 C 0.061 3.939 8 N -0.894 5.894 9 Si 0.899 3.101 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.283 1.283 13 C 0.500 3.500 14 O -0.539 6.539 15 C 0.097 3.903 16 N -0.701 5.701 17 C 0.603 3.397 18 O -0.527 6.527 19 C -0.074 4.074 20 C -0.123 4.123 21 C -0.228 4.228 22 C -0.005 4.005 23 O -0.160 6.160 24 H 0.062 0.938 25 H 0.051 0.949 26 H 0.062 0.938 27 H 0.086 0.914 28 H 0.068 0.932 29 H 0.035 0.965 30 H 0.044 0.956 31 H 0.263 0.737 32 H 0.098 0.902 33 H 0.097 0.903 34 H 0.418 0.582 35 H 0.160 0.840 36 H 0.156 0.844 37 H 0.210 0.790 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.895 -2.095 18.341 18.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.023 4.023 3 N -0.320 5.320 4 C 0.127 3.873 5 C -0.567 4.567 6 H 0.077 0.923 7 C -0.141 4.141 8 N -0.533 5.533 9 Si 0.727 3.273 10 H -0.198 1.198 11 H -0.209 1.209 12 H -0.209 1.209 13 C 0.285 3.715 14 O -0.417 6.417 15 C -0.030 4.030 16 N -0.355 5.355 17 C 0.389 3.611 18 O -0.406 6.406 19 C -0.126 4.126 20 C -0.143 4.143 21 C -0.248 4.248 22 C -0.076 4.076 23 O -0.054 6.054 24 H 0.081 0.919 25 H 0.070 0.930 26 H 0.081 0.919 27 H 0.105 0.895 28 H 0.086 0.914 29 H 0.053 0.947 30 H 0.063 0.937 31 H 0.073 0.927 32 H 0.115 0.885 33 H 0.115 0.885 34 H 0.257 0.743 35 H 0.178 0.822 36 H 0.174 0.826 37 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges -3.923 -2.050 17.940 18.478 hybrid contribution 1.113 0.246 -0.269 1.171 sum -2.810 -1.804 17.671 17.984 Atomic orbital electron populations 1.22222 0.96476 1.01737 1.02390 1.21519 0.93780 0.83807 1.03150 1.48222 1.62917 1.13428 1.07448 1.19339 0.96493 0.93672 0.77799 1.21459 0.96823 1.32037 1.06351 0.92331 1.24938 0.97937 0.94858 0.96361 1.69941 1.35635 1.33391 1.14311 0.86428 0.84500 0.78070 0.78341 1.19788 1.20928 1.20869 1.20119 0.79096 0.87067 0.85217 1.90672 1.46300 1.17961 1.86756 1.21304 1.03007 0.93508 0.85154 1.45663 1.66497 1.18932 1.04377 1.16492 0.78199 0.85362 0.81069 1.90871 1.47282 1.18213 1.84200 1.22055 1.10116 0.84524 0.95884 1.21960 1.00774 1.00437 0.91176 1.21858 1.07851 0.93876 1.01170 1.24456 1.02081 1.00146 0.80880 1.84127 1.64388 1.25064 1.31862 0.91875 0.93006 0.91924 0.89511 0.91411 0.94693 0.93749 0.92718 0.88455 0.88508 0.74341 0.82189 0.82602 0.77320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.21 10.24 37.16 0.38 -1.83 16 2 C 0.10 1.56 5.93 -4.04 -0.02 1.54 16 3 N -0.59 -11.95 2.46 -175.06 -0.43 -12.38 16 4 C 0.25 6.23 5.16 -5.19 -0.03 6.20 16 5 C -0.53 -14.66 9.39 -34.44 -0.32 -14.99 16 6 H 0.06 1.63 7.81 -52.49 -0.41 1.22 16 7 C 0.06 1.72 5.46 -17.82 -0.10 1.63 16 8 N -0.89 -26.16 13.29 55.43 0.74 -25.43 16 9 Si 0.90 21.62 29.54 -169.99 -5.02 16.60 16 10 H -0.27 -6.50 7.11 56.52 0.40 -6.09 16 11 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 12 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 13 C 0.50 9.96 7.74 -10.99 -0.09 9.88 16 14 O -0.54 -12.78 15.25 5.56 0.08 -12.70 16 15 C 0.10 1.51 4.71 -5.20 -0.02 1.49 16 16 N -0.70 -10.82 5.52 -62.81 -0.35 -11.17 16 17 C 0.60 9.10 7.79 -12.86 -0.10 9.00 16 18 O -0.53 -8.90 16.86 5.19 0.09 -8.81 16 19 C -0.07 -0.97 7.13 -36.79 -0.26 -1.23 16 20 C -0.12 -1.36 10.62 -39.39 -0.42 -1.78 16 21 C -0.23 -1.97 10.87 -39.89 -0.43 -2.40 16 22 C -0.01 -0.05 12.08 29.63 0.36 0.31 16 23 O -0.16 -1.93 10.40 5.00 0.05 -1.88 16 24 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 25 H 0.05 0.65 7.22 -51.93 -0.38 0.27 16 26 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 27 H 0.09 1.38 8.07 -51.92 -0.42 0.96 16 28 H 0.07 0.88 6.44 -51.93 -0.33 0.55 16 29 H 0.04 0.89 8.07 -51.93 -0.42 0.48 16 30 H 0.04 1.27 7.42 -51.93 -0.39 0.89 16 31 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 32 H 0.10 1.41 7.40 -51.93 -0.38 1.03 16 33 H 0.10 1.35 7.19 -51.93 -0.37 0.97 16 34 H 0.42 6.64 7.19 -40.82 -0.29 6.35 16 35 H 0.16 1.59 8.06 -52.48 -0.42 1.17 16 36 H 0.16 0.89 8.06 -52.48 -0.42 0.47 16 37 H 0.21 0.90 8.06 -52.49 -0.42 0.48 16 LS Contribution 327.33 15.07 4.93 4.93 Total: -1.00 -33.70 327.33 -5.60 -39.31 By element: Atomic # 1 Polarization: 8.37 SS G_CDS: -4.64 Total: 3.72 kcal Atomic # 6 Polarization: 8.87 SS G_CDS: -1.06 Total: 7.81 kcal Atomic # 7 Polarization: -48.93 SS G_CDS: -0.04 Total: -48.97 kcal Atomic # 8 Polarization: -23.62 SS G_CDS: 0.22 Total: -23.39 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -33.70 -5.60 -39.31 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084408399.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.380 kcal (2) G-P(sol) polarization free energy of solvation -33.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.306 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds