Wall clock time and date at job start Tue Mar 31 2020 02:09:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46499 * 109.47324 * 2 1 4 4 C 1.46507 * 120.00232 * 270.00102 * 3 2 1 5 5 C 1.50703 * 109.47140 * 270.00069 * 4 3 2 6 6 H 1.08000 * 119.99950 * 359.97438 * 5 4 3 7 7 C 1.37877 * 119.99928 * 179.97438 * 5 4 3 8 8 N 1.31521 * 119.99796 * 0.02562 * 7 5 4 9 9 Si 1.86793 * 119.99893 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47553 * 359.97438 * 9 7 5 11 11 H 1.48495 * 109.47407 * 120.00178 * 9 7 5 12 12 H 1.48502 * 109.46814 * 239.99814 * 9 7 5 13 13 C 1.34775 * 119.99933 * 90.00085 * 3 2 1 14 14 O 1.21279 * 120.00063 * 179.97438 * 13 3 2 15 15 C 1.50700 * 120.00105 * 0.02562 * 13 3 2 16 16 N 1.46493 * 109.47225 * 179.97438 * 15 13 3 17 17 C 1.34778 * 119.99793 * 179.97438 * 16 15 13 18 18 O 1.21695 * 120.00192 * 359.97438 * 17 16 15 19 19 C 1.46661 * 119.99796 * 179.97438 * 17 16 15 20 20 C 1.36547 * 125.98711 * 179.97438 * 19 17 16 21 21 C 1.40360 * 106.70833 * 180.02562 * 20 19 17 22 22 C 1.35131 * 107.11647 * 359.97438 * 21 20 19 23 23 O 1.33934 * 108.76477 * 0.02562 * 22 21 20 24 24 H 1.08998 * 109.47629 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.46924 * 300.00276 * 1 2 3 26 26 H 1.09004 * 109.47076 * 59.99193 * 1 2 3 27 27 H 1.09008 * 109.46857 * 240.00329 * 2 1 3 28 28 H 1.08997 * 109.47368 * 120.00500 * 2 1 3 29 29 H 1.08998 * 109.46434 * 30.00235 * 4 3 2 30 30 H 1.08995 * 109.46869 * 150.00062 * 4 3 2 31 31 H 0.96996 * 119.99909 * 180.02562 * 8 7 5 32 32 H 1.08997 * 109.47342 * 59.99110 * 15 13 3 33 33 H 1.09001 * 109.46775 * 299.99724 * 15 13 3 34 34 H 0.96998 * 120.00266 * 359.97438 * 16 15 13 35 35 H 1.08005 * 126.64485 * 0.02562 * 20 19 17 36 36 H 1.08003 * 126.44294 * 180.02562 * 21 20 19 37 37 H 1.07997 * 125.61851 * 180.26772 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0719 -1.2688 5 6 3.6858 1.8350 -1.7038 6 1 4.3429 1.2308 -1.0959 7 6 4.1491 2.3897 -2.8780 8 7 3.3491 3.1258 -3.6181 9 14 5.9131 2.0955 -3.4176 10 1 6.6008 1.2405 -2.4171 11 1 5.9201 1.4164 -4.7382 12 1 6.6209 3.3965 -3.5264 13 6 2.2430 2.0165 1.1672 14 8 2.6477 3.1598 1.1672 15 6 1.9924 1.3059 2.4723 16 7 2.3102 2.2032 3.5858 17 6 2.1605 1.7796 4.8565 18 8 1.7608 0.6518 5.0788 19 6 2.4792 2.6777 5.9712 20 6 2.3728 2.3776 7.2990 21 6 2.7779 3.5212 8.0049 22 6 3.1103 4.4572 7.0887 23 8 2.9287 3.9452 5.8644 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5140 -0.8899 27 1 1.8933 -0.5138 -0.8901 28 1 1.8933 -0.5139 0.8899 29 1 1.5816 1.6878 -2.0283 30 1 2.0956 3.1410 -1.1383 31 1 3.6749 3.5157 -4.4443 32 1 2.6227 0.4186 2.5298 33 1 0.9445 1.0114 2.5302 34 1 2.6284 3.1022 3.4086 35 1 2.0411 1.4417 7.7238 36 1 2.8175 3.6319 9.0785 37 1 3.4675 5.4526 7.3075 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084408399.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:09:06 Heat of formation + Delta-G solvation = -78.886882 kcal Electronic energy + Delta-G solvation = -21377.016935 eV Core-core repulsion = 17927.407317 eV Total energy + Delta-G solvation = -3449.609618 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -43.65485 -41.25709 -40.14837 -37.15816 -35.77280 -34.89222 -34.02827 -31.75052 -31.36451 -29.89518 -28.09901 -25.07833 -24.37212 -23.62392 -22.68544 -21.45790 -20.48346 -19.49111 -18.62615 -17.92578 -17.65977 -17.46347 -16.99466 -16.77379 -16.68186 -16.01824 -15.62352 -15.12737 -14.74204 -14.52335 -14.25526 -14.10515 -13.91559 -13.75612 -13.55524 -13.52160 -13.26918 -13.06086 -12.69273 -12.51445 -12.18929 -11.92644 -11.70353 -11.62188 -11.04756 -10.82859 -10.65450 -10.45945 -9.67677 -9.53424 -8.23778 -6.38095 -0.00374 1.36753 1.38706 1.42083 1.49926 1.56602 1.61981 1.99175 2.03802 2.33900 2.45594 3.06477 3.42564 3.69166 3.96637 4.05995 4.11896 4.19136 4.28788 4.41795 4.61806 4.62528 4.85477 4.90440 4.94796 4.96715 5.04258 5.04677 5.21045 5.38382 5.40738 5.54399 5.78273 5.83565 6.03980 6.28609 6.59181 6.71898 6.84890 7.18597 7.35515 8.83736 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.020859 B = 0.003840 C = 0.003440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1342.018886 B = 7290.451499 C = 8137.432031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.094 3.906 3 N -0.593 5.593 4 C 0.262 3.738 5 C -0.543 4.543 6 H 0.054 0.946 7 C 0.009 3.991 8 N -0.927 5.927 9 Si 0.967 3.033 10 H -0.268 1.268 11 H -0.270 1.270 12 H -0.282 1.282 13 C 0.495 3.505 14 O -0.586 6.586 15 C 0.112 3.888 16 N -0.707 5.707 17 C 0.605 3.395 18 O -0.551 6.551 19 C -0.116 4.116 20 C -0.115 4.115 21 C -0.231 4.231 22 C 0.007 3.993 23 O -0.179 6.179 24 H 0.096 0.904 25 H 0.058 0.942 26 H 0.042 0.958 27 H 0.079 0.921 28 H 0.100 0.900 29 H 0.027 0.973 30 H 0.001 0.999 31 H 0.267 0.733 32 H 0.114 0.886 33 H 0.119 0.881 34 H 0.414 0.586 35 H 0.167 0.833 36 H 0.189 0.811 37 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.299 -2.911 20.315 20.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.028 4.028 3 N -0.324 5.324 4 C 0.141 3.859 5 C -0.582 4.582 6 H 0.073 0.927 7 C -0.190 4.190 8 N -0.567 5.567 9 Si 0.792 3.208 10 H -0.192 1.192 11 H -0.195 1.195 12 H -0.208 1.208 13 C 0.282 3.718 14 O -0.467 6.467 15 C -0.015 4.015 16 N -0.360 5.360 17 C 0.394 3.606 18 O -0.432 6.432 19 C -0.167 4.167 20 C -0.136 4.136 21 C -0.250 4.250 22 C -0.062 4.062 23 O -0.075 6.075 24 H 0.115 0.885 25 H 0.077 0.923 26 H 0.062 0.938 27 H 0.098 0.902 28 H 0.118 0.882 29 H 0.045 0.955 30 H 0.019 0.981 31 H 0.076 0.924 32 H 0.132 0.868 33 H 0.137 0.863 34 H 0.252 0.748 35 H 0.185 0.815 36 H 0.206 0.794 37 H 0.268 0.732 Dipole moment (debyes) X Y Z Total from point charges -3.351 -2.912 19.930 20.419 hybrid contribution 0.907 0.567 -0.783 1.326 sum -2.444 -2.345 19.147 19.445 Atomic orbital electron populations 1.22162 0.94389 1.03720 1.01778 1.21851 0.95487 0.81046 1.04382 1.48209 1.63006 1.15185 1.05992 1.18783 0.95464 0.91701 0.79975 1.21734 0.97823 1.32052 1.06582 0.92749 1.25835 1.02311 0.94465 0.96433 1.70053 1.37662 1.34178 1.14798 0.85367 0.79077 0.77978 0.78376 1.19191 1.19493 1.20782 1.20848 0.77869 0.86639 0.86424 1.90641 1.48288 1.20164 1.87581 1.21223 1.04595 0.93117 0.82539 1.45710 1.66879 1.18728 1.04645 1.16693 0.77410 0.85420 0.81121 1.90838 1.48588 1.19215 1.84557 1.21791 1.13689 0.85404 0.95819 1.22288 0.99165 1.01465 0.90699 1.22252 1.07283 0.92660 1.02761 1.25433 0.99693 1.01492 0.79619 1.84116 1.64858 1.24772 1.33763 0.88525 0.92328 0.93840 0.90221 0.88213 0.95531 0.98080 0.92385 0.86824 0.86326 0.74765 0.81522 0.79397 0.73223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.97 10.24 71.98 0.74 -3.24 16 2 C 0.09 2.81 5.93 86.38 0.51 3.32 16 3 N -0.59 -24.47 2.46 -826.15 -2.03 -26.50 16 4 C 0.26 13.84 5.16 85.63 0.44 14.28 16 5 C -0.54 -30.89 9.39 25.60 0.24 -30.65 16 6 H 0.05 3.06 7.81 -2.91 -0.02 3.04 16 7 C 0.01 0.50 5.46 84.65 0.46 0.96 16 8 N -0.93 -55.50 13.29 21.45 0.28 -55.21 16 9 Si 0.97 44.59 29.54 68.60 2.03 46.61 16 10 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 11 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 12 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 13 C 0.49 20.05 7.74 87.66 0.68 20.73 16 14 O -0.59 -28.96 15.25 -3.03 -0.05 -29.00 16 15 C 0.11 3.39 4.71 85.63 0.40 3.79 16 16 N -0.71 -21.86 5.52 -470.85 -2.60 -24.47 16 17 C 0.61 18.14 7.79 86.44 0.67 18.81 16 18 O -0.55 -18.27 16.86 -4.33 -0.07 -18.35 16 19 C -0.12 -2.98 7.13 24.08 0.17 -2.81 16 20 C -0.12 -2.38 10.62 22.39 0.24 -2.14 16 21 C -0.23 -3.29 10.87 22.07 0.24 -3.05 16 22 C 0.01 0.10 12.08 67.10 0.81 0.91 16 23 O -0.18 -4.18 10.40 -5.01 -0.05 -4.23 16 24 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16 25 H 0.06 1.36 7.22 -2.39 -0.02 1.34 16 26 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 27 H 0.08 2.49 8.07 -2.38 -0.02 2.47 16 28 H 0.10 2.34 6.44 -2.39 -0.02 2.33 16 29 H 0.03 1.43 8.07 -2.39 -0.02 1.41 16 30 H 0.00 0.07 7.42 -2.39 -0.02 0.05 16 31 H 0.27 14.96 8.31 -92.71 -0.77 14.19 16 32 H 0.11 3.10 7.40 -2.39 -0.02 3.08 16 33 H 0.12 3.10 7.19 -2.39 -0.02 3.08 16 34 H 0.41 13.56 7.19 -92.71 -0.67 12.89 16 35 H 0.17 3.08 8.06 -2.91 -0.02 3.05 16 36 H 0.19 1.37 8.06 -2.91 -0.02 1.34 16 37 H 0.25 1.12 8.06 -2.91 -0.02 1.10 16 Total: -1.00 -75.99 327.33 3.55 -72.44 By element: Atomic # 1 Polarization: 17.34 SS G_CDS: 0.43 Total: 17.77 kcal Atomic # 6 Polarization: 15.32 SS G_CDS: 5.61 Total: 20.93 kcal Atomic # 7 Polarization: -101.83 SS G_CDS: -4.35 Total: -106.18 kcal Atomic # 8 Polarization: -51.40 SS G_CDS: -0.17 Total: -51.57 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 2.03 Total: 46.61 kcal Total: -75.99 3.55 -72.44 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084408399.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.446 kcal (2) G-P(sol) polarization free energy of solvation -75.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.441 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds