Wall clock time and date at job start Tue Mar 31 2020 02:10:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42904 * 109.46955 * 2 1 4 4 C 1.35897 * 117.00235 * 180.02562 * 3 2 1 5 5 C 1.38618 * 120.01371 * 0.27377 * 4 3 2 6 6 C 1.38800 * 119.86793 * 180.23439 * 5 4 3 7 7 N 1.39668 * 120.04555 * 179.78911 * 6 5 4 8 8 C 1.46497 * 119.99719 * 179.72442 * 7 6 5 9 9 H 1.08996 * 109.47049 * 324.99423 * 8 7 6 10 10 C 1.52997 * 109.47188 * 85.00313 * 8 7 6 11 11 C 1.50706 * 109.46582 * 205.00165 * 8 7 6 12 12 H 1.07999 * 120.00196 * 359.97438 * 11 8 7 13 13 C 1.37879 * 119.99394 * 179.97438 * 11 8 7 14 14 N 1.31514 * 119.99350 * 179.97438 * 13 11 8 15 15 Si 1.86789 * 120.00458 * 0.02562 * 13 11 8 16 16 H 1.48500 * 109.47356 * 89.99481 * 15 13 11 17 17 H 1.48501 * 109.47162 * 209.99853 * 15 13 11 18 18 H 1.48503 * 109.47180 * 329.99546 * 15 13 11 19 19 C 1.38974 * 119.90656 * 359.51559 * 6 5 4 20 20 C 1.38118 * 120.03504 * 0.23216 * 19 6 5 21 21 C 1.38213 * 120.12711 * 0.02562 * 20 19 6 22 22 N 1.48011 * 119.95095 * 180.02562 * 21 20 19 23 23 O 1.21796 * 119.99857 * 0.02562 * 22 21 20 24 24 O 1.21801 * 119.99939 * 179.97438 * 22 21 20 25 25 H 1.09000 * 109.47046 * 299.99749 * 1 2 3 26 26 H 1.09000 * 109.47658 * 59.99918 * 1 2 3 27 27 H 1.09007 * 109.46958 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47046 * 240.00251 * 2 1 3 29 29 H 1.09000 * 109.47658 * 120.00082 * 2 1 3 30 30 H 1.07998 * 120.06606 * 0.02562 * 5 4 3 31 31 H 0.96996 * 119.99488 * 359.72263 * 7 6 5 32 32 H 1.09002 * 109.47153 * 299.99573 * 10 8 7 33 33 H 1.09001 * 109.46832 * 179.97438 * 10 8 7 34 34 H 1.09004 * 109.47261 * 59.99745 * 10 8 7 35 35 H 0.97005 * 119.99656 * 180.02562 * 14 13 11 36 36 H 1.07996 * 119.98114 * 180.25271 * 19 6 5 37 37 H 1.07998 * 119.93627 * 180.02562 * 20 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3535 1.5255 -0.0005 5 6 4.1983 0.4264 -0.0068 6 6 5.5738 0.6119 -0.0024 7 7 6.4284 -0.4929 -0.0042 8 6 7.8801 -0.2959 -0.0057 9 1 8.1262 0.5875 -0.5948 10 6 8.3701 -0.1040 1.4309 11 6 8.5502 -1.5040 -0.6079 12 1 7.9543 -2.3354 -0.9545 13 6 9.9240 -1.5477 -0.7165 14 7 10.5088 -2.6022 -1.2416 15 14 10.9546 -0.1100 -0.1165 16 1 11.3091 -0.3166 1.3107 17 1 12.1957 -0.0185 -0.9266 18 1 10.1782 1.1481 -0.2565 19 6 6.0996 1.8983 -0.0019 20 6 5.2543 2.9906 -0.0010 21 6 3.8843 2.8076 0.0000 22 7 2.9821 3.9809 0.0005 23 8 3.4470 5.1067 -0.0006 24 8 1.7746 3.8207 0.0009 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 3.7869 -0.5721 -0.0117 31 1 6.0606 -1.3904 -0.0045 32 1 7.8854 0.7698 1.8665 33 1 9.4503 0.0421 1.4298 34 1 8.1239 -0.9875 2.0199 35 1 11.4754 -2.6331 -1.3176 36 1 7.1697 2.0440 -0.0027 37 1 5.6646 3.9896 -0.0011 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000092640100.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:10:29 Heat of formation + Delta-G solvation = -17.349373 kcal Electronic energy + Delta-G solvation = -21764.044539 eV Core-core repulsion = 18317.103388 eV Total energy + Delta-G solvation = -3446.941151 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.70207 -40.19590 -38.42114 -36.07911 -35.89085 -33.17959 -31.97688 -31.37545 -29.75833 -29.01522 -25.68162 -25.03374 -24.26373 -22.54527 -21.73893 -20.52328 -19.17869 -18.37076 -17.80390 -17.31283 -17.10333 -16.27298 -16.22214 -15.58806 -15.30823 -14.50250 -13.99691 -13.83107 -13.55026 -13.26300 -13.06202 -12.80174 -12.72793 -12.49811 -12.06732 -11.78490 -11.56446 -11.40371 -11.06887 -11.04690 -10.96655 -10.66699 -10.60502 -10.46816 -10.12530 -9.86292 -9.53757 -8.94173 -8.64624 -7.51155 -6.44518 -4.50177 0.45216 1.26216 1.86926 1.96690 2.86929 3.02535 3.10351 3.16655 3.58848 3.63911 4.06452 4.53915 4.72992 4.75337 4.87725 4.93505 5.01788 5.06668 5.18042 5.37764 5.47458 5.61044 5.66730 5.84981 5.89857 5.99973 6.05936 6.15686 6.18056 6.33859 6.43355 6.78593 6.83966 7.09180 7.14951 7.40551 7.92250 8.13381 8.20032 8.53458 9.12633 10.67505 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.022919 B = 0.004430 C = 0.003826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1221.417334 B = 6319.571771 C = 7317.311483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.048 3.952 3 O -0.285 6.285 4 C 0.245 3.755 5 C -0.312 4.312 6 C 0.314 3.686 7 N -0.683 5.683 8 C 0.232 3.768 9 H 0.047 0.953 10 C -0.170 4.170 11 C -0.543 4.543 12 H 0.081 0.919 13 C 0.081 3.919 14 N -0.885 5.885 15 Si 0.888 3.112 16 H -0.274 1.274 17 H -0.291 1.291 18 H -0.265 1.265 19 C -0.230 4.230 20 C 0.023 3.977 21 C -0.158 4.158 22 N 0.057 4.943 23 O -0.211 6.211 24 O -0.170 6.170 25 H 0.068 0.932 26 H 0.069 0.931 27 H 0.078 0.922 28 H 0.067 0.933 29 H 0.066 0.934 30 H 0.143 0.857 31 H 0.404 0.596 32 H 0.037 0.963 33 H 0.052 0.948 34 H 0.058 0.942 35 H 0.271 0.729 36 H 0.147 0.853 37 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.443 4.303 3.554 13.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.027 4.027 3 O -0.195 6.195 4 C 0.194 3.806 5 C -0.337 4.337 6 C 0.196 3.804 7 N -0.300 5.300 8 C 0.128 3.872 9 H 0.065 0.935 10 C -0.228 4.228 11 C -0.580 4.580 12 H 0.099 0.901 13 C -0.124 4.124 14 N -0.521 5.521 15 Si 0.717 3.283 16 H -0.201 1.201 17 H -0.218 1.218 18 H -0.190 1.190 19 C -0.253 4.253 20 C 0.002 3.998 21 C -0.247 4.247 22 N 0.566 4.434 23 O -0.415 6.415 24 O -0.385 6.385 25 H 0.087 0.913 26 H 0.088 0.912 27 H 0.096 0.904 28 H 0.085 0.915 29 H 0.085 0.915 30 H 0.161 0.839 31 H 0.239 0.761 32 H 0.056 0.944 33 H 0.071 0.929 34 H 0.078 0.922 35 H 0.081 0.919 36 H 0.164 0.836 37 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -11.720 3.813 3.491 12.810 hybrid contribution 0.524 0.225 0.309 0.649 sum -11.196 4.038 3.800 12.494 Atomic orbital electron populations 1.21757 0.92262 1.02720 1.03971 1.22960 0.96357 0.81472 1.01916 1.86376 1.17247 1.29697 1.86213 1.18153 0.83304 0.90935 0.88183 1.20469 0.91921 0.98069 1.23240 1.18032 0.89217 0.88836 0.84306 1.45697 1.06834 1.05547 1.71955 1.19361 0.75439 0.99300 0.93066 0.93501 1.22591 1.00319 1.00480 0.99382 1.20913 0.92404 1.02420 1.42302 0.90066 1.24847 0.97536 0.95893 0.94156 1.69851 1.10735 1.28451 1.43027 0.86851 0.79945 0.83004 0.78464 1.20088 1.21791 1.18983 1.20712 1.00930 0.89700 1.13990 1.20516 0.88876 1.00747 0.89650 1.20023 0.90180 0.82535 1.31961 1.43232 1.01427 1.01946 0.96788 1.94465 1.80421 1.09993 1.56601 1.94517 0.97205 1.92699 1.54032 0.91283 0.91241 0.90355 0.91468 0.91545 0.83934 0.76063 0.94371 0.92926 0.92247 0.91938 0.83576 0.83095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 10.28 37.16 0.38 -0.82 16 2 C 0.05 0.47 5.46 37.16 0.20 0.67 16 3 O -0.28 -4.01 8.14 -41.58 -0.34 -4.35 16 4 C 0.24 3.66 6.67 -39.25 -0.26 3.39 16 5 C -0.31 -4.26 8.88 -39.23 -0.35 -4.61 16 6 C 0.31 4.77 6.63 -83.81 -0.56 4.22 16 7 N -0.68 -11.29 5.24 -53.30 -0.28 -11.57 16 8 C 0.23 4.58 1.84 -69.08 -0.13 4.45 16 9 H 0.05 0.95 5.54 -51.93 -0.29 0.67 16 10 C -0.17 -3.14 8.91 37.16 0.33 -2.81 16 11 C -0.54 -13.17 9.31 -34.44 -0.32 -13.49 16 12 H 0.08 2.13 7.98 -52.49 -0.42 1.71 16 13 C 0.08 2.06 5.45 -17.82 -0.10 1.97 16 14 N -0.88 -24.48 13.96 55.43 0.77 -23.71 16 15 Si 0.89 19.38 24.37 -169.99 -4.14 15.24 16 16 H -0.27 -5.84 6.87 56.52 0.39 -5.45 16 17 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 18 H -0.26 -5.41 6.53 56.52 0.37 -5.04 16 19 C -0.23 -3.46 8.85 -39.35 -0.35 -3.80 16 20 C 0.02 0.33 9.54 -39.63 -0.38 -0.05 16 21 C -0.16 -2.55 6.87 -79.76 -0.55 -3.10 16 22 N 0.06 1.02 4.45 34.05 0.15 1.17 16 23 O -0.21 -3.82 18.44 -29.46 -0.54 -4.36 16 24 O -0.17 -3.13 17.23 -36.50 -0.63 -3.76 16 25 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.07 0.60 7.65 -51.93 -0.40 0.20 16 29 H 0.07 0.58 7.67 -51.93 -0.40 0.18 16 30 H 0.14 1.60 6.30 -52.49 -0.33 1.27 16 31 H 0.40 6.17 8.55 -40.82 -0.35 5.82 16 32 H 0.04 0.62 7.70 -51.93 -0.40 0.22 16 33 H 0.05 1.03 3.27 -51.93 -0.17 0.86 16 34 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 35 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 36 H 0.15 2.18 6.11 -52.49 -0.32 1.86 16 37 H 0.15 1.94 7.60 -52.49 -0.40 1.54 16 LS Contribution 310.27 15.07 4.68 4.68 Total: -1.00 -28.46 310.27 -6.74 -35.20 By element: Atomic # 1 Polarization: 9.78 SS G_CDS: -4.34 Total: 5.44 kcal Atomic # 6 Polarization: -11.91 SS G_CDS: -2.07 Total: -13.98 kcal Atomic # 7 Polarization: -34.76 SS G_CDS: 0.65 Total: -34.11 kcal Atomic # 8 Polarization: -10.96 SS G_CDS: -1.51 Total: -12.47 kcal Atomic # 14 Polarization: 19.38 SS G_CDS: -4.14 Total: 15.24 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -28.46 -6.74 -35.20 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092640100.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.854 kcal (2) G-P(sol) polarization free energy of solvation -28.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.203 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds