Wall clock time and date at job start Tue Mar 31 2020 02:10:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42905 * 109.47237 * 2 1 4 4 C 1.35890 * 117.00281 * 179.97438 * 3 2 1 5 5 C 1.38614 * 120.01982 * 0.02562 * 4 3 2 6 6 C 1.38785 * 119.87647 * 180.02562 * 5 4 3 7 7 N 1.39669 * 120.04923 * 179.97438 * 6 5 4 8 8 C 1.46503 * 119.99943 * 0.02729 * 7 6 5 9 9 C 1.46496 * 120.00208 * 180.02562 * 7 6 5 10 10 C 1.50699 * 109.47215 * 90.00170 * 9 7 6 11 11 H 1.08004 * 119.99923 * 0.02562 * 10 9 7 12 12 C 1.37879 * 120.00366 * 179.97438 * 10 9 7 13 13 N 1.31513 * 119.99788 * 0.02562 * 12 10 9 14 14 Si 1.86801 * 120.00002 * 180.02562 * 12 10 9 15 15 H 1.48503 * 109.47103 * 60.00345 * 14 12 10 16 16 H 1.48502 * 109.47164 * 180.02562 * 14 12 10 17 17 H 1.48496 * 109.47054 * 300.00292 * 14 12 10 18 18 C 1.38971 * 119.90807 * 0.02562 * 6 5 4 19 19 C 1.38120 * 120.03395 * 0.02562 * 18 6 5 20 20 C 1.38217 * 120.12663 * 0.23858 * 19 18 6 21 21 N 1.48002 * 119.95338 * 179.72194 * 20 19 18 22 22 O 1.21806 * 119.99866 * 359.97438 * 21 20 19 23 23 O 1.21796 * 120.00161 * 179.97438 * 21 20 19 24 24 H 1.09005 * 109.47143 * 60.00052 * 1 2 3 25 25 H 1.09003 * 109.47173 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47239 * 300.00161 * 1 2 3 27 27 H 1.08998 * 109.47502 * 240.00289 * 2 1 3 28 28 H 1.08997 * 109.47290 * 120.00227 * 2 1 3 29 29 H 1.08003 * 120.06263 * 0.04399 * 5 4 3 30 30 H 1.09002 * 109.46815 * 89.99682 * 8 7 6 31 31 H 1.09001 * 109.47073 * 209.99603 * 8 7 6 32 32 H 1.09000 * 109.46882 * 330.00170 * 8 7 6 33 33 H 1.09000 * 109.47416 * 210.00614 * 9 7 6 34 34 H 1.09000 * 109.47548 * 330.00216 * 9 7 6 35 35 H 0.97005 * 119.99828 * 179.97438 * 13 12 10 36 36 H 1.07998 * 119.98803 * 179.97438 * 18 6 5 37 37 H 1.08002 * 119.93398 * 179.97438 * 19 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3535 1.5254 0.0005 5 6 4.1983 0.4264 0.0005 6 6 5.5737 0.6118 0.0016 7 7 6.4283 -0.4930 0.0021 8 6 5.8729 -1.8487 0.0009 9 6 7.8800 -0.2962 0.0039 10 6 8.3762 -0.2293 1.4253 11 1 7.6798 -0.3243 2.2453 12 6 9.7192 -0.0478 1.6789 13 7 10.5672 0.0674 0.6803 14 14 10.3343 0.0344 3.4408 15 1 10.0055 -1.2341 4.1395 16 1 11.8058 0.2340 3.4426 17 1 9.6804 1.1690 4.1409 18 6 6.0996 1.8981 0.0033 19 6 5.2543 2.9905 0.0043 20 6 3.8843 2.8076 0.0088 21 7 2.9822 3.9808 0.0161 22 8 3.4472 5.1066 0.0188 23 8 1.7748 3.8207 0.0196 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5139 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8899 29 1 3.7870 -0.5722 -0.0006 30 1 5.7363 -2.1844 -1.0271 31 1 6.5582 -2.5225 0.5152 32 1 4.9110 -1.8477 0.5136 33 1 8.3602 -1.1290 -0.5098 34 1 8.1211 0.6348 -0.5093 35 1 11.5121 0.1955 0.8587 36 1 7.1697 2.0439 0.0045 37 1 5.6647 3.9895 0.0060 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000111045124.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:10:23 Heat of formation + Delta-G solvation = -15.861872 kcal Electronic energy + Delta-G solvation = -21919.270171 eV Core-core repulsion = 18472.393523 eV Total energy + Delta-G solvation = -3446.876648 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.54749 -40.07633 -38.30441 -35.92035 -35.71645 -33.02693 -31.96226 -30.63055 -29.90561 -28.05113 -26.50481 -24.75551 -23.76203 -22.88935 -21.45625 -20.67824 -19.04550 -18.05739 -17.46442 -16.96425 -16.72868 -16.19610 -16.12323 -15.69628 -14.92645 -14.38498 -14.18172 -13.95495 -13.33287 -13.16553 -12.82681 -12.71635 -12.40190 -12.06825 -11.87598 -11.79699 -11.56271 -11.23135 -11.04971 -10.92131 -10.90696 -10.66934 -10.52978 -10.46891 -10.29805 -10.14980 -9.50181 -8.73278 -8.45439 -7.18416 -6.32715 -4.43899 0.61996 1.48324 2.04799 2.13688 2.99436 3.14550 3.20597 3.22512 3.52260 3.81113 4.20509 4.68842 4.78324 4.83645 4.98335 5.05873 5.10676 5.24454 5.31487 5.40842 5.52405 5.60139 5.65950 5.66793 5.86749 5.95050 5.96145 6.23047 6.32467 6.62545 6.72096 6.92853 6.97068 7.26974 7.49314 7.70007 7.81683 7.83715 8.35765 8.62403 9.24677 10.71840 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.018997 B = 0.004810 C = 0.004173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1473.564437 B = 5819.732462 C = 6707.875171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.049 3.951 3 O -0.286 6.286 4 C 0.241 3.759 5 C -0.318 4.318 6 C 0.314 3.686 7 N -0.583 5.583 8 C 0.085 3.915 9 C 0.240 3.760 10 C -0.544 4.544 11 H 0.061 0.939 12 C 0.067 3.933 13 N -0.890 5.890 14 Si 0.900 3.100 15 H -0.276 1.276 16 H -0.284 1.284 17 H -0.274 1.274 18 C -0.210 4.210 19 C 0.015 3.985 20 C -0.158 4.158 21 N 0.059 4.941 22 O -0.214 6.214 23 O -0.175 6.175 24 H 0.068 0.932 25 H 0.076 0.924 26 H 0.068 0.932 27 H 0.064 0.936 28 H 0.064 0.936 29 H 0.142 0.858 30 H 0.049 0.951 31 H 0.079 0.921 32 H 0.060 0.940 33 H 0.040 0.960 34 H 0.043 0.957 35 H 0.268 0.732 36 H 0.156 0.844 37 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.543 -3.496 -2.501 13.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.026 4.026 3 O -0.197 6.197 4 C 0.191 3.809 5 C -0.343 4.343 6 C 0.198 3.802 7 N -0.281 5.281 8 C -0.058 4.058 9 C 0.121 3.879 10 C -0.583 4.583 11 H 0.079 0.921 12 C -0.137 4.137 13 N -0.527 5.527 14 Si 0.727 3.273 15 H -0.201 1.201 16 H -0.210 1.210 17 H -0.199 1.199 18 C -0.232 4.232 19 C -0.006 4.006 20 C -0.248 4.248 21 N 0.567 4.433 22 O -0.417 6.417 23 O -0.389 6.389 24 H 0.087 0.913 25 H 0.095 0.905 26 H 0.087 0.913 27 H 0.083 0.917 28 H 0.083 0.917 29 H 0.159 0.841 30 H 0.068 0.932 31 H 0.098 0.902 32 H 0.078 0.922 33 H 0.058 0.942 34 H 0.061 0.939 35 H 0.078 0.922 36 H 0.174 0.826 37 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -11.884 -4.071 -2.558 12.819 hybrid contribution 0.413 -0.024 1.017 1.098 sum -11.471 -4.095 -1.541 12.277 Atomic orbital electron populations 1.21752 0.92376 1.02587 1.03968 1.22906 0.96236 0.81770 1.01669 1.86366 1.17467 1.29362 1.86480 1.18145 0.83096 0.91004 0.88701 1.20524 0.92158 0.97842 1.23774 1.17959 0.88870 0.88481 0.84861 1.47621 1.07812 1.02600 1.70116 1.21729 0.99341 0.83905 1.00828 1.19587 0.71736 0.98657 0.97945 1.21403 0.92978 1.51972 0.91920 0.92057 1.24943 0.96506 0.94438 0.97784 1.69900 1.03579 1.48161 1.31099 0.86515 0.77788 0.78891 0.84100 1.20118 1.20957 1.19898 1.20873 1.01598 0.89340 1.11437 1.20526 0.88739 1.00811 0.90538 1.20030 0.90181 0.82337 1.32204 1.43250 1.01387 1.02010 0.96695 1.94462 1.80430 1.10079 1.56712 1.94497 0.97369 1.92722 1.54305 0.91295 0.90479 0.91264 0.91738 0.91727 0.84053 0.93238 0.90230 0.92155 0.94172 0.93870 0.92197 0.82602 0.83212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 10.28 37.15 0.38 -0.90 16 2 C 0.05 0.52 5.46 37.15 0.20 0.73 16 3 O -0.29 -4.36 8.14 -41.56 -0.34 -4.70 16 4 C 0.24 3.97 6.67 -39.24 -0.26 3.71 16 5 C -0.32 -4.87 8.19 -39.24 -0.32 -5.19 16 6 C 0.31 5.47 6.55 -83.81 -0.55 4.92 16 7 N -0.58 -10.49 2.99 -181.02 -0.54 -11.03 16 8 C 0.09 1.20 10.19 59.85 0.61 1.81 16 9 C 0.24 5.23 4.91 -5.20 -0.03 5.21 16 10 C -0.54 -13.36 9.39 -34.44 -0.32 -13.68 16 11 H 0.06 1.53 7.81 -52.48 -0.41 1.12 16 12 C 0.07 1.70 5.46 -17.82 -0.10 1.60 16 13 N -0.89 -23.56 13.29 55.43 0.74 -22.83 16 14 Si 0.90 19.89 29.54 -169.99 -5.02 14.87 16 15 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 16 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 17 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 18 C -0.21 -3.73 9.20 -39.35 -0.36 -4.09 16 19 C 0.01 0.25 9.54 -39.63 -0.38 -0.13 16 20 C -0.16 -2.84 6.87 -79.76 -0.55 -3.39 16 21 N 0.06 1.14 4.45 34.05 0.15 1.29 16 22 O -0.21 -4.20 18.44 -29.46 -0.54 -4.74 16 23 O -0.18 -3.46 17.23 -36.50 -0.63 -4.09 16 24 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 25 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.06 0.60 7.66 -51.93 -0.40 0.21 16 28 H 0.06 0.63 7.66 -51.93 -0.40 0.23 16 29 H 0.14 1.78 4.38 -52.48 -0.23 1.55 16 30 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.08 1.15 8.07 -51.93 -0.42 0.73 16 32 H 0.06 0.72 6.19 -51.93 -0.32 0.40 16 33 H 0.04 0.92 8.07 -51.93 -0.42 0.50 16 34 H 0.04 0.99 6.19 -51.93 -0.32 0.67 16 35 H 0.27 6.80 8.31 -40.82 -0.34 6.46 16 36 H 0.16 2.94 6.14 -52.49 -0.32 2.62 16 37 H 0.15 2.29 7.60 -52.49 -0.40 1.89 16 LS Contribution 318.77 15.07 4.80 4.80 Total: -1.00 -28.49 318.77 -7.52 -36.00 By element: Atomic # 1 Polarization: 4.29 SS G_CDS: -4.46 Total: -0.17 kcal Atomic # 6 Polarization: -7.73 SS G_CDS: -1.67 Total: -9.40 kcal Atomic # 7 Polarization: -32.92 SS G_CDS: 0.35 Total: -32.57 kcal Atomic # 8 Polarization: -12.02 SS G_CDS: -1.51 Total: -13.53 kcal Atomic # 14 Polarization: 19.89 SS G_CDS: -5.02 Total: 14.87 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -28.49 -7.52 -36.00 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000111045124.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.142 kcal (2) G-P(sol) polarization free energy of solvation -28.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.004 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds