Wall clock time and date at job start Tue Mar 31 2020 02:10:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42905 * 109.47237 * 2 1 4 4 C 1.35890 * 117.00281 * 179.97438 * 3 2 1 5 5 C 1.38614 * 120.01982 * 0.02562 * 4 3 2 6 6 C 1.38785 * 119.87647 * 180.02562 * 5 4 3 7 7 N 1.39669 * 120.04923 * 179.97438 * 6 5 4 8 8 C 1.46503 * 119.99943 * 0.02729 * 7 6 5 9 9 C 1.46496 * 120.00208 * 180.02562 * 7 6 5 10 10 C 1.50699 * 109.47215 * 90.00170 * 9 7 6 11 11 H 1.08004 * 119.99923 * 0.02562 * 10 9 7 12 12 C 1.37879 * 120.00366 * 179.97438 * 10 9 7 13 13 N 1.31513 * 119.99788 * 0.02562 * 12 10 9 14 14 Si 1.86801 * 120.00002 * 180.02562 * 12 10 9 15 15 H 1.48503 * 109.47103 * 60.00345 * 14 12 10 16 16 H 1.48502 * 109.47164 * 180.02562 * 14 12 10 17 17 H 1.48496 * 109.47054 * 300.00292 * 14 12 10 18 18 C 1.38971 * 119.90807 * 0.02562 * 6 5 4 19 19 C 1.38120 * 120.03395 * 0.02562 * 18 6 5 20 20 C 1.38217 * 120.12663 * 0.23858 * 19 18 6 21 21 N 1.48002 * 119.95338 * 179.72194 * 20 19 18 22 22 O 1.21806 * 119.99866 * 359.97438 * 21 20 19 23 23 O 1.21796 * 120.00161 * 179.97438 * 21 20 19 24 24 H 1.09005 * 109.47143 * 60.00052 * 1 2 3 25 25 H 1.09003 * 109.47173 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47239 * 300.00161 * 1 2 3 27 27 H 1.08998 * 109.47502 * 240.00289 * 2 1 3 28 28 H 1.08997 * 109.47290 * 120.00227 * 2 1 3 29 29 H 1.08003 * 120.06263 * 0.04399 * 5 4 3 30 30 H 1.09002 * 109.46815 * 89.99682 * 8 7 6 31 31 H 1.09001 * 109.47073 * 209.99603 * 8 7 6 32 32 H 1.09000 * 109.46882 * 330.00170 * 8 7 6 33 33 H 1.09000 * 109.47416 * 210.00614 * 9 7 6 34 34 H 1.09000 * 109.47548 * 330.00216 * 9 7 6 35 35 H 0.97005 * 119.99828 * 179.97438 * 13 12 10 36 36 H 1.07998 * 119.98803 * 179.97438 * 18 6 5 37 37 H 1.08002 * 119.93398 * 179.97438 * 19 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3535 1.5254 0.0005 5 6 4.1983 0.4264 0.0005 6 6 5.5737 0.6118 0.0016 7 7 6.4283 -0.4930 0.0021 8 6 5.8729 -1.8487 0.0009 9 6 7.8800 -0.2962 0.0039 10 6 8.3762 -0.2293 1.4253 11 1 7.6798 -0.3243 2.2453 12 6 9.7192 -0.0478 1.6789 13 7 10.5672 0.0674 0.6803 14 14 10.3343 0.0344 3.4408 15 1 10.0055 -1.2341 4.1395 16 1 11.8058 0.2340 3.4426 17 1 9.6804 1.1690 4.1409 18 6 6.0996 1.8981 0.0033 19 6 5.2543 2.9905 0.0043 20 6 3.8843 2.8076 0.0088 21 7 2.9822 3.9808 0.0161 22 8 3.4472 5.1066 0.0188 23 8 1.7748 3.8207 0.0196 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5139 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8899 29 1 3.7870 -0.5722 -0.0006 30 1 5.7363 -2.1844 -1.0271 31 1 6.5582 -2.5225 0.5152 32 1 4.9110 -1.8477 0.5136 33 1 8.3602 -1.1290 -0.5098 34 1 8.1211 0.6348 -0.5093 35 1 11.5121 0.1955 0.8587 36 1 7.1697 2.0439 0.0045 37 1 5.6647 3.9895 0.0060 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000111045124.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:10:23 Heat of formation + Delta-G solvation = -29.803395 kcal Electronic energy + Delta-G solvation = -21919.874721 eV Core-core repulsion = 18472.393523 eV Total energy + Delta-G solvation = -3447.481198 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.99858 -41.35370 -39.55543 -37.39508 -37.12314 -34.86807 -32.86227 -32.05441 -31.13609 -29.60993 -27.90616 -26.23527 -24.89956 -24.38998 -22.59802 -22.08526 -20.39448 -19.53885 -18.87101 -18.53123 -18.40656 -17.46708 -17.12062 -17.08112 -16.57880 -15.72658 -15.46467 -15.32410 -14.47133 -14.39136 -14.15785 -13.91463 -13.54741 -13.32647 -13.18905 -13.09927 -12.92593 -12.69129 -12.50427 -12.43863 -12.27290 -12.07129 -11.97525 -11.93349 -11.85988 -11.66425 -11.02717 -10.66243 -9.71089 -8.66856 -8.18453 -6.41501 -0.82868 0.19018 0.61566 0.71711 1.39040 1.41704 1.48082 1.90831 2.15128 2.38182 2.47658 3.04845 3.47035 3.78220 3.94245 4.00333 4.06292 4.10578 4.24617 4.34972 4.39579 4.58827 4.63938 4.78849 4.83278 4.88666 4.94664 4.97386 5.11451 5.17169 5.28106 5.31882 5.54470 5.61567 5.96311 6.09442 6.13717 6.43966 6.71715 6.84060 7.30297 8.78615 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.018997 B = 0.004810 C = 0.004173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1473.564437 B = 5819.732462 C = 6707.875171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.035 3.965 3 O -0.301 6.301 4 C 0.244 3.756 5 C -0.300 4.300 6 C 0.306 3.694 7 N -0.589 5.589 8 C 0.079 3.921 9 C 0.253 3.747 10 C -0.547 4.547 11 H 0.055 0.945 12 C 0.022 3.978 13 N -0.920 5.920 14 Si 0.955 3.045 15 H -0.269 1.269 16 H -0.283 1.283 17 H -0.275 1.275 18 C -0.223 4.223 19 C 0.020 3.980 20 C -0.174 4.174 21 N 0.059 4.941 22 O -0.231 6.231 23 O -0.185 6.185 24 H 0.062 0.938 25 H 0.107 0.893 26 H 0.060 0.940 27 H 0.083 0.917 28 H 0.079 0.921 29 H 0.175 0.825 30 H 0.072 0.928 31 H 0.071 0.929 32 H 0.087 0.913 33 H 0.027 0.973 34 H 0.027 0.973 35 H 0.268 0.732 36 H 0.139 0.861 37 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.966 -5.111 -2.035 15.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.039 4.039 3 O -0.212 6.212 4 C 0.193 3.807 5 C -0.325 4.325 6 C 0.191 3.809 7 N -0.289 5.289 8 C -0.063 4.063 9 C 0.132 3.868 10 C -0.586 4.586 11 H 0.073 0.927 12 C -0.178 4.178 13 N -0.559 5.559 14 Si 0.780 3.220 15 H -0.194 1.194 16 H -0.208 1.208 17 H -0.201 1.201 18 C -0.246 4.246 19 C 0.000 4.000 20 C -0.264 4.264 21 N 0.563 4.437 22 O -0.431 6.431 23 O -0.398 6.398 24 H 0.081 0.919 25 H 0.125 0.875 26 H 0.080 0.920 27 H 0.101 0.899 28 H 0.097 0.903 29 H 0.192 0.808 30 H 0.090 0.910 31 H 0.090 0.910 32 H 0.106 0.894 33 H 0.045 0.955 34 H 0.045 0.955 35 H 0.078 0.922 36 H 0.157 0.843 37 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -13.354 -5.678 -2.090 14.661 hybrid contribution 0.762 0.419 0.843 1.211 sum -12.592 -5.259 -1.247 13.703 Atomic orbital electron populations 1.21802 0.90945 1.04346 1.03303 1.23357 0.97449 0.79841 1.03229 1.86383 1.16476 1.32478 1.85857 1.18218 0.84080 0.90533 0.87874 1.20686 0.90744 0.98985 1.22074 1.18120 0.89775 0.88030 0.85018 1.47501 1.06366 1.04335 1.70686 1.21981 1.00130 0.81518 1.02631 1.19141 0.74255 0.97219 0.96179 1.21656 0.92941 1.50977 0.93022 0.92684 1.25632 0.96905 0.94395 1.00907 1.69991 1.03747 1.49468 1.32722 0.85651 0.77205 0.78860 0.80255 1.19397 1.20800 1.20055 1.20772 1.00855 0.90221 1.12786 1.20564 0.88508 1.01120 0.89857 1.20267 0.90274 0.82525 1.33328 1.43443 1.01489 1.02309 0.96461 1.94448 1.80419 1.10728 1.57462 1.94475 0.97806 1.92794 1.54677 0.91879 0.87461 0.92046 0.89905 0.90252 0.80767 0.90962 0.90999 0.89416 0.95467 0.95538 0.92250 0.84334 0.82322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.07 10.28 71.98 0.74 -1.33 16 2 C 0.04 0.62 5.46 71.98 0.39 1.02 16 3 O -0.30 -8.50 8.14 -71.12 -0.58 -9.08 16 4 C 0.24 7.56 6.67 22.49 0.15 7.71 16 5 C -0.30 -8.33 8.19 22.49 0.18 -8.15 16 6 C 0.31 10.21 6.55 38.20 0.25 10.46 16 7 N -0.59 -20.41 2.99 -726.63 -2.17 -22.58 16 8 C 0.08 1.99 10.19 127.77 1.30 3.29 16 9 C 0.25 11.10 4.91 85.63 0.42 11.52 16 10 C -0.55 -26.85 9.39 25.60 0.24 -26.61 16 11 H 0.05 2.72 7.81 -2.91 -0.02 2.70 16 12 C 0.02 1.13 5.46 84.66 0.46 1.59 16 13 N -0.92 -49.24 13.29 21.45 0.28 -48.95 16 14 Si 0.95 40.56 29.54 68.60 2.03 42.59 16 15 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 16 H -0.28 -11.85 7.11 99.48 0.71 -11.15 16 17 H -0.28 -11.67 7.11 99.48 0.71 -10.96 16 18 C -0.22 -7.94 9.20 22.42 0.21 -7.73 16 19 C 0.02 0.68 9.54 22.24 0.21 0.89 16 20 C -0.17 -6.12 6.87 36.50 0.25 -5.87 16 21 N 0.06 2.28 4.45 -46.18 -0.21 2.07 16 22 O -0.23 -9.08 18.44 18.88 0.35 -8.73 16 23 O -0.19 -7.22 17.23 25.62 0.44 -6.78 16 24 H 0.06 0.97 8.14 -2.38 -0.02 0.95 16 25 H 0.11 0.87 8.14 -2.39 -0.02 0.85 16 26 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 27 H 0.08 1.19 7.66 -2.39 -0.02 1.17 16 28 H 0.08 1.20 7.66 -2.39 -0.02 1.18 16 29 H 0.18 3.57 4.38 -2.91 -0.01 3.55 16 30 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 31 H 0.07 1.93 8.07 -2.39 -0.02 1.91 16 32 H 0.09 1.71 6.19 -2.39 -0.01 1.69 16 33 H 0.03 1.26 8.07 -2.39 -0.02 1.24 16 34 H 0.03 1.25 6.19 -2.39 -0.01 1.24 16 35 H 0.27 13.73 8.31 -92.70 -0.77 12.96 16 36 H 0.14 5.41 6.14 -2.91 -0.02 5.39 16 37 H 0.16 4.91 7.60 -2.91 -0.02 4.89 16 Total: -1.00 -61.03 318.77 6.05 -54.98 By element: Atomic # 1 Polarization: 8.61 SS G_CDS: 1.09 Total: 9.71 kcal Atomic # 6 Polarization: -18.03 SS G_CDS: 4.81 Total: -13.22 kcal Atomic # 7 Polarization: -67.37 SS G_CDS: -2.09 Total: -69.46 kcal Atomic # 8 Polarization: -24.80 SS G_CDS: 0.21 Total: -24.59 kcal Atomic # 14 Polarization: 40.56 SS G_CDS: 2.03 Total: 42.59 kcal Total: -61.03 6.05 -54.98 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000111045124.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.178 kcal (2) G-P(sol) polarization free energy of solvation -61.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.981 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds