Wall clock time and date at job start Tue Mar 31 2020 02:09:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46502 * 109.47181 * 2 1 4 4 C 1.36945 * 119.99848 * 265.79308 * 3 2 1 5 5 H 1.08000 * 119.99512 * 140.99893 * 4 3 2 6 6 C 1.38990 * 120.00069 * 320.99536 * 4 3 2 7 7 N 1.31404 * 119.99588 * 159.49643 * 6 4 3 8 8 Si 1.86793 * 120.00302 * 339.49094 * 6 4 3 9 9 H 1.48495 * 109.47242 * 92.20716 * 8 6 4 10 10 H 1.48506 * 109.47441 * 212.20967 * 8 6 4 11 11 H 1.48503 * 109.47106 * 332.21026 * 8 6 4 12 12 C 1.34777 * 119.99866 * 85.79804 * 3 2 1 13 13 O 1.21638 * 119.99910 * 175.50878 * 12 3 2 14 14 C 1.47324 * 119.99794 * 355.77846 * 12 3 2 15 15 N 1.36073 * 126.45706 * 353.75932 * 14 12 3 16 16 C 1.29940 * 108.48316 * 179.88424 * 15 14 12 17 17 O 1.34051 * 109.26504 * 0.38552 * 16 15 14 18 18 C 1.34275 * 108.23209 * 359.75883 * 17 16 15 19 19 C 1.50700 * 126.54060 * 180.02562 * 18 17 16 20 20 H 1.08994 * 110.27985 * 165.63420 * 19 18 17 21 21 C 1.54940 * 110.30796 * 287.83538 * 19 18 17 22 22 C 1.55306 * 100.94071 * 155.35650 * 21 19 18 23 23 C 1.54381 * 102.25491 * 325.86573 * 22 21 19 24 24 O 1.43241 * 107.58747 * 21.35361 * 23 22 21 25 25 H 1.09008 * 109.46680 * 299.99527 * 1 2 3 26 26 H 1.08999 * 109.47283 * 59.99112 * 1 2 3 27 27 H 1.08993 * 109.47384 * 180.02562 * 1 2 3 28 28 H 1.09008 * 109.46680 * 240.00473 * 2 1 3 29 29 H 1.09004 * 109.47603 * 120.00553 * 2 1 3 30 30 H 0.97005 * 119.99843 * 179.97438 * 7 6 4 31 31 H 1.08004 * 125.37272 * 180.14491 * 16 15 14 32 32 H 1.08994 * 111.12773 * 273.27214 * 21 19 18 33 33 H 1.09003 * 111.12833 * 37.44299 * 21 19 18 34 34 H 1.09002 * 110.85008 * 207.68024 * 22 21 19 35 35 H 1.08994 * 111.02572 * 84.13768 * 22 21 19 36 36 H 1.09005 * 109.83283 * 261.85011 * 23 22 21 37 37 H 1.08996 * 109.83194 * 140.86952 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3286 1.9978 -1.1828 5 1 2.0821 3.0389 -1.3299 6 6 2.9607 1.2836 -2.1939 7 7 2.9034 1.7115 -3.4350 8 14 3.8917 -0.2842 -1.7885 9 1 2.9847 -1.4507 -1.9360 10 1 5.0419 -0.4310 -2.7163 11 1 4.3887 -0.2174 -0.3907 12 6 2.1623 2.0451 1.1641 13 8 2.6443 3.1618 1.1717 14 6 1.7414 1.4157 2.4279 15 7 1.0880 0.2297 2.5622 16 6 0.8919 0.0084 3.8275 17 8 1.3944 1.0281 4.5379 18 6 1.9277 1.9142 3.6815 19 6 2.6041 3.2125 4.0393 20 1 3.1568 3.5990 3.1830 21 6 1.5577 4.2495 4.5193 22 6 2.4415 5.1737 5.4006 23 6 3.4558 4.1787 6.0044 24 8 3.4856 3.0237 5.1577 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5140 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 1.8933 -0.5138 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 3.3449 1.2133 -4.1406 31 1 0.3980 -0.8583 4.2414 32 1 1.1332 4.7975 3.6782 33 1 0.7755 3.7735 5.1107 34 1 1.8485 5.6460 6.1837 35 1 2.9484 5.9243 4.7943 36 1 3.1410 3.8931 7.0082 37 1 4.4447 4.6355 6.0416 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000115046264.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:09:41 Heat of formation + Delta-G solvation = -29.567603 kcal Electronic energy + Delta-G solvation = -22833.373106 eV Core-core repulsion = 19385.902133 eV Total energy + Delta-G solvation = -3447.470973 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -43.09259 -39.28480 -38.61211 -35.25091 -34.41370 -32.25195 -32.19836 -31.37207 -29.57693 -28.10891 -25.58284 -23.29277 -23.06329 -22.55472 -21.73091 -20.97192 -19.42377 -17.25972 -16.81742 -16.70302 -16.42240 -16.11393 -15.76438 -15.33058 -14.96644 -14.06090 -13.82471 -13.72407 -13.48156 -13.23622 -13.01109 -12.60080 -12.29788 -11.99196 -11.85091 -11.73606 -11.44763 -11.38570 -11.11059 -10.93203 -10.89471 -10.58873 -10.24980 -9.93166 -9.72977 -9.58130 -9.13023 -8.70201 -8.55565 -7.73449 -6.44622 -3.99624 1.43703 2.50660 2.84397 3.08353 3.24303 3.31834 3.78072 4.12549 4.18675 4.21674 4.39988 4.57023 4.64129 4.81438 4.98549 5.10350 5.24785 5.38796 5.46146 5.60919 5.64985 5.74901 5.87197 5.88876 5.92294 5.95870 6.19581 6.23347 6.29884 6.33291 6.62228 6.76324 6.94657 7.06109 7.50782 7.80587 8.24433 8.49557 8.89200 9.26168 9.73794 10.66148 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.022511 B = 0.005978 C = 0.005332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1243.556116 B = 4682.825023 C = 5249.987123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.087 3.913 3 N -0.436 5.436 4 C -0.310 4.310 5 H 0.108 0.892 6 C 0.064 3.936 7 N -0.856 5.856 8 Si 0.880 3.120 9 H -0.271 1.271 10 H -0.286 1.286 11 H -0.263 1.263 12 C 0.526 3.474 13 O -0.566 6.566 14 C -0.025 4.025 15 N -0.456 5.456 16 C 0.156 3.844 17 O -0.196 6.196 18 C 0.006 3.994 19 C 0.162 3.838 20 H 0.139 0.861 21 C -0.145 4.145 22 C -0.154 4.154 23 C 0.051 3.949 24 O -0.377 6.377 25 H 0.057 0.943 26 H 0.053 0.947 27 H 0.049 0.951 28 H 0.064 0.936 29 H 0.083 0.917 30 H 0.276 0.724 31 H 0.249 0.751 32 H 0.095 0.905 33 H 0.077 0.923 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.068 0.932 37 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.953 -0.992 16.607 17.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.036 4.036 3 N -0.154 5.154 4 C -0.438 4.438 5 H 0.125 0.875 6 C -0.143 4.143 7 N -0.492 5.492 8 Si 0.707 3.293 9 H -0.198 1.198 10 H -0.213 1.213 11 H -0.187 1.187 12 C 0.315 3.685 13 O -0.450 6.450 14 C -0.146 4.146 15 N -0.187 5.187 16 C -0.071 4.071 17 O -0.082 6.082 18 C -0.050 4.050 19 C 0.105 3.895 20 H 0.156 0.844 21 C -0.183 4.183 22 C -0.192 4.192 23 C -0.026 4.026 24 O -0.297 6.297 25 H 0.076 0.924 26 H 0.072 0.928 27 H 0.068 0.932 28 H 0.082 0.918 29 H 0.101 0.899 30 H 0.086 0.914 31 H 0.264 0.736 32 H 0.114 0.886 33 H 0.096 0.904 34 H 0.102 0.898 35 H 0.102 0.898 36 H 0.086 0.914 37 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -3.727 -1.040 15.935 16.398 hybrid contribution 0.392 -0.622 0.598 0.948 sum -3.335 -1.662 16.532 16.947 Atomic orbital electron populations 1.21916 0.95947 1.00551 1.01744 1.22010 0.95332 0.84612 1.01630 1.43634 1.54645 1.12044 1.05075 1.19083 1.38093 0.98919 0.87673 0.87494 1.25389 0.95863 0.98370 0.94694 1.69733 1.39964 1.40146 0.99332 0.86921 0.79977 0.82821 0.79539 1.19826 1.21296 1.18743 1.16756 0.83560 0.87074 0.81146 1.90595 1.49212 1.19886 1.85271 1.22123 1.03950 0.92994 0.95533 1.71156 1.15113 1.14870 1.17548 1.28084 0.99882 0.93038 0.86092 1.84312 1.56922 1.27663 1.39348 1.23393 1.00570 0.93393 0.87606 1.21883 0.89543 0.86164 0.91928 0.84422 1.23285 0.97976 0.96524 1.00504 1.23131 0.97625 0.98555 0.99844 1.23133 0.99380 0.85967 0.94074 1.88478 1.64617 1.39775 1.36840 0.92368 0.92831 0.93201 0.91777 0.89943 0.91380 0.73573 0.88622 0.90404 0.89832 0.89832 0.91411 0.91072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.76 9.62 37.16 0.36 -2.41 16 2 C 0.09 1.94 4.32 -4.04 -0.02 1.92 16 3 N -0.44 -11.18 2.16 -116.06 -0.25 -11.43 16 4 C -0.31 -8.91 9.32 -14.99 -0.14 -9.05 16 5 H 0.11 3.38 7.98 -52.49 -0.42 2.96 16 6 C 0.06 1.79 5.30 -17.46 -0.09 1.70 16 7 N -0.86 -24.70 13.96 55.50 0.77 -23.93 16 8 Si 0.88 21.35 25.11 -169.99 -4.27 17.08 16 9 H -0.27 -6.14 6.56 56.52 0.37 -5.77 16 10 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 11 H -0.26 -6.54 7.11 56.52 0.40 -6.13 16 12 C 0.53 13.10 7.59 -12.56 -0.10 13.00 16 13 O -0.57 -15.14 14.53 5.24 0.08 -15.06 16 14 C -0.03 -0.52 6.44 -83.03 -0.53 -1.06 16 15 N -0.46 -8.10 6.19 -11.48 -0.07 -8.17 16 16 C 0.16 2.12 13.19 51.96 0.69 2.80 16 17 O -0.20 -3.08 10.73 6.46 0.07 -3.01 16 18 C 0.01 0.12 6.38 -35.04 -0.22 -0.11 16 19 C 0.16 2.73 3.66 -26.86 -0.10 2.63 16 20 H 0.14 2.67 5.93 -51.93 -0.31 2.36 16 21 C -0.15 -1.90 6.56 -24.48 -0.16 -2.06 16 22 C -0.15 -1.58 7.02 -24.78 -0.17 -1.76 16 23 C 0.05 0.59 7.79 37.88 0.30 0.88 16 24 O -0.38 -6.09 11.03 -35.23 -0.39 -6.48 16 25 H 0.06 1.11 6.46 -51.92 -0.34 0.77 16 26 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 27 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.06 1.48 3.46 -51.92 -0.18 1.30 16 29 H 0.08 1.74 5.73 -51.93 -0.30 1.45 16 30 H 0.28 7.35 8.31 -40.82 -0.34 7.01 16 31 H 0.25 1.84 8.06 -52.48 -0.42 1.42 16 32 H 0.10 1.27 8.14 -51.93 -0.42 0.85 16 33 H 0.08 0.96 8.05 -51.93 -0.42 0.54 16 34 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 37 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 LS Contribution 302.63 15.07 4.56 4.56 Total: -1.00 -33.21 302.63 -4.20 -37.41 By element: Atomic # 1 Polarization: 7.04 SS G_CDS: -4.51 Total: 2.53 kcal Atomic # 6 Polarization: 6.69 SS G_CDS: -0.20 Total: 6.50 kcal Atomic # 7 Polarization: -43.98 SS G_CDS: 0.45 Total: -43.53 kcal Atomic # 8 Polarization: -24.31 SS G_CDS: -0.24 Total: -24.55 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -4.27 Total: 17.08 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -33.21 -4.20 -37.41 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000115046264.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.839 kcal (2) G-P(sol) polarization free energy of solvation -33.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.407 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds