Wall clock time and date at job start Tue Mar 31 2020 02:09:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46502 * 109.47181 * 2 1 4 4 C 1.36945 * 119.99848 * 265.79308 * 3 2 1 5 5 H 1.08000 * 119.99512 * 140.99893 * 4 3 2 6 6 C 1.38990 * 120.00069 * 320.99536 * 4 3 2 7 7 N 1.31404 * 119.99588 * 159.49643 * 6 4 3 8 8 Si 1.86793 * 120.00302 * 339.49094 * 6 4 3 9 9 H 1.48495 * 109.47242 * 92.20716 * 8 6 4 10 10 H 1.48506 * 109.47441 * 212.20967 * 8 6 4 11 11 H 1.48503 * 109.47106 * 332.21026 * 8 6 4 12 12 C 1.34777 * 119.99866 * 85.79804 * 3 2 1 13 13 O 1.21638 * 119.99910 * 175.50878 * 12 3 2 14 14 C 1.47324 * 119.99794 * 355.77846 * 12 3 2 15 15 N 1.36073 * 126.45706 * 353.75932 * 14 12 3 16 16 C 1.29940 * 108.48316 * 179.88424 * 15 14 12 17 17 O 1.34051 * 109.26504 * 0.38552 * 16 15 14 18 18 C 1.34275 * 108.23209 * 359.75883 * 17 16 15 19 19 C 1.50700 * 126.54060 * 180.02562 * 18 17 16 20 20 H 1.08994 * 110.27985 * 165.63420 * 19 18 17 21 21 C 1.54940 * 110.30796 * 287.83538 * 19 18 17 22 22 C 1.55306 * 100.94071 * 155.35650 * 21 19 18 23 23 C 1.54381 * 102.25491 * 325.86573 * 22 21 19 24 24 O 1.43241 * 107.58747 * 21.35361 * 23 22 21 25 25 H 1.09008 * 109.46680 * 299.99527 * 1 2 3 26 26 H 1.08999 * 109.47283 * 59.99112 * 1 2 3 27 27 H 1.08993 * 109.47384 * 180.02562 * 1 2 3 28 28 H 1.09008 * 109.46680 * 240.00473 * 2 1 3 29 29 H 1.09004 * 109.47603 * 120.00553 * 2 1 3 30 30 H 0.97005 * 119.99843 * 179.97438 * 7 6 4 31 31 H 1.08004 * 125.37272 * 180.14491 * 16 15 14 32 32 H 1.08994 * 111.12773 * 273.27214 * 21 19 18 33 33 H 1.09003 * 111.12833 * 37.44299 * 21 19 18 34 34 H 1.09002 * 110.85008 * 207.68024 * 22 21 19 35 35 H 1.08994 * 111.02572 * 84.13768 * 22 21 19 36 36 H 1.09005 * 109.83283 * 261.85011 * 23 22 21 37 37 H 1.08996 * 109.83194 * 140.86952 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3286 1.9978 -1.1828 5 1 2.0821 3.0389 -1.3299 6 6 2.9607 1.2836 -2.1939 7 7 2.9034 1.7115 -3.4350 8 14 3.8917 -0.2842 -1.7885 9 1 2.9847 -1.4507 -1.9360 10 1 5.0419 -0.4310 -2.7163 11 1 4.3887 -0.2174 -0.3907 12 6 2.1623 2.0451 1.1641 13 8 2.6443 3.1618 1.1717 14 6 1.7414 1.4157 2.4279 15 7 1.0880 0.2297 2.5622 16 6 0.8919 0.0084 3.8275 17 8 1.3944 1.0281 4.5379 18 6 1.9277 1.9142 3.6815 19 6 2.6041 3.2125 4.0393 20 1 3.1568 3.5990 3.1830 21 6 1.5577 4.2495 4.5193 22 6 2.4415 5.1737 5.4006 23 6 3.4558 4.1787 6.0044 24 8 3.4856 3.0237 5.1577 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5140 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 1.8933 -0.5138 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 3.3449 1.2133 -4.1406 31 1 0.3980 -0.8583 4.2414 32 1 1.1332 4.7975 3.6782 33 1 0.7755 3.7735 5.1107 34 1 1.8485 5.6460 6.1837 35 1 2.9484 5.9243 4.7943 36 1 3.1410 3.8931 7.0082 37 1 4.4447 4.6355 6.0416 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000115046264.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:09:40 Heat of formation + Delta-G solvation = -54.699587 kcal Electronic energy + Delta-G solvation = -22834.462911 eV Core-core repulsion = 19385.902133 eV Total energy + Delta-G solvation = -3448.560778 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -44.41949 -40.55008 -40.34904 -37.18839 -35.83023 -34.26731 -33.36263 -32.56389 -31.34359 -29.39925 -27.44491 -24.77652 -24.41815 -24.20132 -22.66660 -22.33876 -21.02550 -19.06802 -18.53350 -17.91584 -17.72851 -17.65704 -17.41967 -16.71151 -16.12642 -15.90645 -15.55554 -15.13122 -14.82555 -14.69606 -14.50237 -14.20607 -14.12505 -13.78781 -13.14756 -12.86836 -12.82126 -12.73679 -12.66435 -12.41767 -12.35235 -11.98483 -11.90130 -11.60506 -11.32819 -11.16514 -10.80492 -10.55701 -10.01914 -9.71784 -8.59188 -6.20849 0.03100 1.10949 1.18848 1.31681 1.38474 1.57475 2.11867 2.27442 2.56996 2.71496 2.91824 3.22487 3.43433 3.47272 3.86131 3.90627 4.07635 4.18207 4.19587 4.29448 4.45135 4.52907 4.59853 4.65305 4.74399 4.82820 4.92802 4.92958 4.95399 5.11922 5.17201 5.21903 5.49192 5.52660 5.85106 5.96596 6.37731 6.60218 6.82079 7.17954 7.73280 8.56887 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.022511 B = 0.005978 C = 0.005332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1243.556116 B = 4682.825023 C = 5249.987123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.086 3.914 3 N -0.452 5.452 4 C -0.331 4.331 5 H 0.054 0.946 6 C 0.023 3.977 7 N -0.897 5.897 8 Si 0.943 3.057 9 H -0.237 1.237 10 H -0.279 1.279 11 H -0.274 1.274 12 C 0.523 3.477 13 O -0.600 6.600 14 C -0.060 4.060 15 N -0.484 5.484 16 C 0.196 3.804 17 O -0.189 6.189 18 C 0.019 3.981 19 C 0.155 3.845 20 H 0.101 0.899 21 C -0.141 4.141 22 C -0.144 4.144 23 C 0.041 3.959 24 O -0.398 6.398 25 H 0.059 0.941 26 H 0.030 0.970 27 H 0.087 0.913 28 H 0.055 0.945 29 H 0.098 0.902 30 H 0.283 0.717 31 H 0.313 0.687 32 H 0.085 0.915 33 H 0.091 0.909 34 H 0.117 0.883 35 H 0.083 0.917 36 H 0.091 0.909 37 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.829 -3.426 19.888 20.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.036 4.036 3 N -0.171 5.171 4 C -0.459 4.459 5 H 0.072 0.928 6 C -0.181 4.181 7 N -0.534 5.534 8 Si 0.767 3.233 9 H -0.162 1.162 10 H -0.205 1.205 11 H -0.199 1.199 12 C 0.313 3.687 13 O -0.486 6.486 14 C -0.179 4.179 15 N -0.213 5.213 16 C -0.031 4.031 17 O -0.076 6.076 18 C -0.038 4.038 19 C 0.097 3.903 20 H 0.119 0.881 21 C -0.178 4.178 22 C -0.181 4.181 23 C -0.035 4.035 24 O -0.319 6.319 25 H 0.078 0.922 26 H 0.049 0.951 27 H 0.106 0.894 28 H 0.073 0.927 29 H 0.116 0.884 30 H 0.093 0.907 31 H 0.327 0.673 32 H 0.104 0.896 33 H 0.110 0.890 34 H 0.135 0.865 35 H 0.102 0.898 36 H 0.110 0.890 37 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -4.623 -3.484 19.197 20.051 hybrid contribution 0.620 0.204 -0.229 0.692 sum -4.002 -3.279 18.969 19.662 Atomic orbital electron populations 1.21828 0.93823 1.02650 1.00723 1.22175 0.97145 0.82499 1.01770 1.43735 1.55696 1.13413 1.04236 1.18696 1.39974 0.97362 0.89883 0.92791 1.26055 0.95940 1.01971 0.94089 1.69816 1.41071 1.42211 1.00314 0.85936 0.79071 0.79832 0.78492 1.16174 1.20483 1.19879 1.17381 0.82230 0.86556 0.82561 1.90562 1.50186 1.21450 1.86359 1.21453 1.07201 0.95138 0.94118 1.71013 1.16427 1.13879 1.19977 1.29491 0.96311 0.92709 0.84621 1.84368 1.56779 1.27719 1.38726 1.23487 0.99392 0.93724 0.87208 1.21701 0.90507 0.86638 0.91447 0.88119 1.23266 0.97731 0.96036 1.00789 1.23146 0.97064 0.97808 1.00067 1.23461 1.00593 0.85108 0.94332 1.88441 1.64636 1.41932 1.36864 0.92176 0.95052 0.89377 0.92690 0.88373 0.90662 0.67262 0.89641 0.89018 0.86482 0.89837 0.89043 0.89940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.93 9.62 71.98 0.69 -4.23 16 2 C 0.09 3.76 4.32 86.38 0.37 4.13 16 3 N -0.45 -24.03 2.16 -639.34 -1.38 -25.41 16 4 C -0.33 -20.24 9.32 84.08 0.78 -19.46 16 5 H 0.05 3.76 7.98 -2.91 -0.02 3.73 16 6 C 0.02 1.36 5.30 84.94 0.45 1.81 16 7 N -0.90 -53.88 13.96 21.67 0.30 -53.58 16 8 Si 0.94 44.45 25.11 68.60 1.72 46.17 16 9 H -0.24 -9.83 6.56 99.48 0.65 -9.18 16 10 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 11 H -0.27 -13.30 7.11 99.48 0.71 -12.59 16 12 C 0.52 27.15 7.59 86.63 0.66 27.81 16 13 O -0.60 -34.38 14.53 -4.15 -0.06 -34.44 16 14 C -0.06 -2.47 6.44 40.40 0.26 -2.21 16 15 N -0.48 -15.84 6.19 -305.15 -1.89 -17.73 16 16 C 0.20 4.37 13.19 130.52 1.72 6.09 16 17 O -0.19 -5.26 10.73 0.20 0.00 -5.26 16 18 C 0.02 0.68 6.38 25.21 0.16 0.84 16 19 C 0.15 5.23 3.66 30.51 0.11 5.35 16 20 H 0.10 4.16 5.93 -2.39 -0.01 4.15 16 21 C -0.14 -3.55 6.56 32.05 0.21 -3.34 16 22 C -0.14 -2.64 7.02 31.86 0.22 -2.41 16 23 C 0.04 0.84 7.79 72.45 0.56 1.40 16 24 O -0.40 -12.45 11.03 -148.98 -1.64 -14.10 16 25 H 0.06 2.20 6.46 -2.38 -0.02 2.19 16 26 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 27 H 0.09 2.57 8.14 -2.39 -0.02 2.55 16 28 H 0.06 2.47 3.46 -2.38 -0.01 2.46 16 29 H 0.10 3.97 5.73 -2.39 -0.01 3.96 16 30 H 0.28 15.51 8.31 -92.70 -0.77 14.74 16 31 H 0.31 2.31 8.06 -2.91 -0.02 2.28 16 32 H 0.08 2.30 8.14 -2.39 -0.02 2.29 16 33 H 0.09 2.04 8.05 -2.39 -0.02 2.02 16 34 H 0.12 1.40 8.14 -2.39 -0.02 1.38 16 35 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 36 H 0.09 1.47 8.14 -2.38 -0.02 1.45 16 37 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 Total: -1.00 -79.15 302.63 4.31 -74.84 By element: Atomic # 1 Polarization: 12.68 SS G_CDS: 1.04 Total: 13.72 kcal Atomic # 6 Polarization: 9.57 SS G_CDS: 6.21 Total: 15.78 kcal Atomic # 7 Polarization: -93.76 SS G_CDS: -2.97 Total: -96.72 kcal Atomic # 8 Polarization: -52.10 SS G_CDS: -1.70 Total: -53.80 kcal Atomic # 14 Polarization: 44.45 SS G_CDS: 1.72 Total: 46.17 kcal Total: -79.15 4.31 -74.84 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000115046264.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.139 kcal (2) G-P(sol) polarization free energy of solvation -79.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.839 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds