Wall clock time and date at job start Tue Mar 31 2020 02:09:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46506 * 109.47318 * 2 1 4 4 C 1.36930 * 119.99722 * 274.24509 * 3 2 1 5 5 H 1.08001 * 120.00438 * 321.53810 * 4 3 2 6 6 C 1.38811 * 119.99929 * 141.53786 * 4 3 2 7 7 N 1.31614 * 120.00164 * 341.96273 * 6 4 3 8 8 Si 1.86801 * 119.99878 * 161.96825 * 6 4 3 9 9 H 1.48498 * 109.47456 * 359.97438 * 8 6 4 10 10 H 1.48507 * 109.47275 * 120.00043 * 8 6 4 11 11 H 1.48501 * 109.47224 * 239.99671 * 8 6 4 12 12 C 1.46501 * 120.00056 * 94.24511 * 3 2 1 13 13 C 1.52999 * 109.47186 * 90.00175 * 12 3 2 14 14 O 1.42901 * 109.46930 * 64.99644 * 13 12 3 15 15 C 1.35905 * 116.99452 * 179.97438 * 14 13 12 16 16 C 1.38750 * 120.05775 * 0.02562 * 15 14 13 17 17 C 1.38126 * 119.94386 * 179.97438 * 16 15 14 18 18 C 1.38284 * 120.05350 * 0.02562 * 17 16 15 19 19 C 1.38243 * 120.11527 * 359.97438 * 18 17 16 20 20 C 1.38163 * 120.05289 * 0.02562 * 19 18 17 21 21 N 1.48006 * 120.02831 * 180.02562 * 20 19 18 22 22 O 1.21802 * 119.99801 * 359.97206 * 21 20 19 23 23 O 1.21800 * 120.00244 * 179.97438 * 21 20 19 24 24 H 1.08994 * 109.47266 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.46689 * 300.00274 * 1 2 3 26 26 H 1.08996 * 109.46873 * 59.99860 * 1 2 3 27 27 H 1.09002 * 109.47150 * 239.99459 * 2 1 3 28 28 H 1.09006 * 109.47142 * 119.99612 * 2 1 3 29 29 H 0.97002 * 120.00715 * 179.97438 * 7 6 4 30 30 H 1.08999 * 109.46969 * 329.99743 * 12 3 2 31 31 H 1.08999 * 109.46934 * 210.00526 * 12 3 2 32 32 H 1.09003 * 109.46816 * 304.99931 * 13 12 3 33 33 H 1.08996 * 109.47085 * 185.00500 * 13 12 3 34 34 H 1.08002 * 120.02664 * 359.95559 * 16 15 14 35 35 H 1.08001 * 119.97281 * 179.72327 * 17 16 15 36 36 H 1.08006 * 119.94392 * 179.97438 * 18 17 16 37 37 H 1.07996 * 119.97383 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.1638 2.0559 -1.1826 5 1 2.5312 1.5397 -2.0573 6 6 1.8391 3.4035 -1.2574 7 7 1.0751 3.9485 -0.3347 8 14 2.4866 4.4433 -2.6677 9 1 3.3169 3.5997 -3.5643 10 1 1.3448 5.0053 -3.4332 11 1 3.3131 5.5520 -2.1265 12 6 2.3511 2.0406 1.2652 13 6 3.8232 1.7906 1.5989 14 8 4.6479 2.4200 0.6162 15 6 5.9926 2.2938 0.7668 16 6 6.5078 1.5783 1.8381 17 6 7.8750 1.4510 1.9886 18 6 8.7300 2.0364 1.0729 19 6 8.2192 2.7498 0.0046 20 6 6.8524 2.8801 -0.1503 21 7 6.3062 3.6435 -1.2946 22 8 7.0616 4.1577 -2.0998 23 8 5.1012 3.7576 -1.4310 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 0.8484 4.8902 -0.3866 30 1 1.7246 1.6373 2.0608 31 1 2.1763 3.1125 1.1733 32 1 4.0176 0.7180 1.6034 33 1 4.0484 2.2047 2.5817 34 1 5.8404 1.1215 2.5539 35 1 8.2766 0.8979 2.8248 36 1 9.7987 1.9361 1.1925 37 1 8.8890 3.2065 -0.7089 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000121066754.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:09:16 Heat of formation + Delta-G solvation = 16.404428 kcal Electronic energy + Delta-G solvation = -22920.637459 eV Core-core repulsion = 19475.159983 eV Total energy + Delta-G solvation = -3445.477476 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.54552 -39.87462 -37.61175 -35.83442 -35.58593 -31.92464 -31.59749 -30.75836 -29.59967 -27.63600 -25.97603 -24.23626 -23.13496 -22.08717 -21.66485 -19.81422 -19.06880 -18.00797 -17.54244 -16.89629 -16.64051 -15.72183 -15.37684 -15.29861 -14.56397 -14.47840 -13.81490 -13.55416 -13.30350 -12.82205 -12.47477 -12.17620 -11.93324 -11.59362 -11.45902 -11.13243 -10.87232 -10.83629 -10.69778 -10.67972 -10.38336 -10.13839 -10.03898 -9.82137 -9.73886 -9.59905 -9.52137 -8.38937 -8.26678 -6.45688 -5.58716 -3.18844 0.26295 1.12062 1.77952 1.97203 3.35838 3.40334 3.68809 3.82999 3.92252 4.46552 4.57066 4.78661 4.86982 4.88783 5.10858 5.33430 5.43666 5.54368 5.64463 5.79132 5.86050 5.89809 6.05292 6.11410 6.18491 6.31662 6.45833 6.54764 6.61704 6.67106 6.99935 7.01235 7.29060 7.51176 7.70049 8.04212 8.36197 8.69790 9.34084 9.98902 10.50957 11.43238 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.016309 B = 0.008015 C = 0.005849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1716.380509 B = 3492.460030 C = 4785.801932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.140 3.860 3 N -0.578 5.578 4 C -0.242 4.242 5 H 0.055 0.945 6 C 0.030 3.970 7 N -0.900 5.900 8 Si 0.908 3.092 9 H -0.275 1.275 10 H -0.305 1.305 11 H -0.280 1.280 12 C 0.141 3.859 13 C 0.033 3.967 14 O -0.233 6.233 15 C 0.207 3.793 16 C -0.224 4.224 17 C -0.031 4.031 18 C -0.177 4.177 19 C -0.022 4.022 20 C -0.092 4.092 21 N 0.029 4.971 22 O -0.215 6.215 23 O -0.090 6.090 24 H 0.028 0.972 25 H 0.042 0.958 26 H 0.056 0.944 27 H 0.038 0.962 28 H 0.029 0.971 29 H 0.251 0.749 30 H 0.051 0.949 31 H 0.113 0.887 32 H 0.050 0.950 33 H 0.048 0.952 34 H 0.147 0.853 35 H 0.137 0.863 36 H 0.140 0.860 37 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.192 -6.031 8.015 15.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.014 3.986 3 N -0.299 5.299 4 C -0.371 4.371 5 H 0.073 0.927 6 C -0.169 4.169 7 N -0.543 5.543 8 Si 0.740 3.260 9 H -0.200 1.200 10 H -0.234 1.234 11 H -0.206 1.206 12 C 0.014 3.986 13 C -0.045 4.045 14 O -0.140 6.140 15 C 0.155 3.845 16 C -0.243 4.243 17 C -0.050 4.050 18 C -0.196 4.196 19 C -0.041 4.041 20 C -0.176 4.176 21 N 0.545 4.455 22 O -0.415 6.415 23 O -0.319 6.319 24 H 0.047 0.953 25 H 0.062 0.938 26 H 0.075 0.925 27 H 0.057 0.943 28 H 0.047 0.953 29 H 0.061 0.939 30 H 0.069 0.931 31 H 0.130 0.870 32 H 0.068 0.932 33 H 0.066 0.934 34 H 0.165 0.835 35 H 0.155 0.845 36 H 0.158 0.842 37 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 12.354 -6.120 8.352 16.119 hybrid contribution 0.289 0.604 -0.672 0.948 sum 12.642 -5.516 7.680 15.788 Atomic orbital electron populations 1.22250 0.99541 0.98143 1.02082 1.20902 0.92162 0.87773 0.97742 1.43782 1.73486 1.09742 1.02858 1.18834 1.36877 0.92438 0.88994 0.92689 1.25002 0.95794 0.98525 0.97599 1.69896 1.36117 1.12101 1.36229 0.86099 0.76995 0.81027 0.81858 1.20007 1.23430 1.20640 1.21114 0.85737 1.04033 0.87758 1.24347 0.95681 0.95585 0.88867 1.86841 1.09810 1.68115 1.49268 1.19131 0.86493 0.88676 0.90249 1.21374 0.96929 1.05897 1.00093 1.21308 0.92545 0.93953 0.97169 1.20938 1.00612 1.02233 0.95825 1.20872 0.91629 0.94301 0.97259 1.20606 0.93465 1.09927 0.93640 1.43484 1.01455 0.99504 1.01019 1.94440 1.57262 1.50381 1.39393 1.94679 0.96125 1.61908 1.79227 0.95341 0.93848 0.92477 0.94324 0.95263 0.93907 0.93114 0.86982 0.93225 0.93402 0.83516 0.84484 0.84229 0.83116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.17 10.22 37.16 0.38 -2.80 16 2 C 0.14 2.89 6.39 -4.04 -0.03 2.87 16 3 N -0.58 -13.97 2.41 -173.23 -0.42 -14.39 16 4 C -0.24 -6.69 8.98 -15.06 -0.14 -6.83 16 5 H 0.06 1.59 7.89 -52.49 -0.41 1.18 16 6 C 0.03 0.86 5.03 -17.43 -0.09 0.77 16 7 N -0.90 -26.13 11.32 55.49 0.63 -25.50 16 8 Si 0.91 24.47 26.16 -169.99 -4.45 20.03 16 9 H -0.28 -7.48 7.11 56.52 0.40 -7.07 16 10 H -0.31 -8.17 7.11 56.52 0.40 -7.76 16 11 H -0.28 -7.70 7.09 56.52 0.40 -7.30 16 12 C 0.14 3.10 5.69 -4.04 -0.02 3.08 16 13 C 0.03 0.59 5.08 37.16 0.19 0.78 16 14 O -0.23 -4.90 7.62 -41.56 -0.32 -5.22 16 15 C 0.21 3.63 6.67 -39.22 -0.26 3.37 16 16 C -0.22 -2.89 9.04 -39.43 -0.36 -3.24 16 17 C -0.03 -0.31 10.04 -39.61 -0.40 -0.71 16 18 C -0.18 -1.80 10.04 -39.56 -0.40 -2.19 16 19 C -0.02 -0.29 9.55 -39.61 -0.38 -0.67 16 20 C -0.09 -1.64 6.87 -79.81 -0.55 -2.19 16 21 N 0.03 0.64 4.45 34.03 0.15 0.79 16 22 O -0.22 -4.61 18.45 -29.46 -0.54 -5.15 16 23 O -0.09 -2.30 13.54 -36.49 -0.49 -2.80 16 24 H 0.03 0.47 8.14 -51.93 -0.42 0.04 16 25 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 26 H 0.06 1.27 8.14 -51.93 -0.42 0.84 16 27 H 0.04 0.80 8.07 -51.93 -0.42 0.38 16 28 H 0.03 0.52 8.04 -51.93 -0.42 0.11 16 29 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 30 H 0.05 1.01 8.07 -51.93 -0.42 0.59 16 31 H 0.11 2.90 5.44 -51.93 -0.28 2.61 16 32 H 0.05 0.82 7.66 -51.93 -0.40 0.42 16 33 H 0.05 0.72 7.66 -51.93 -0.40 0.32 16 34 H 0.15 1.61 6.30 -52.49 -0.33 1.28 16 35 H 0.14 0.86 8.06 -52.49 -0.42 0.44 16 36 H 0.14 0.94 8.06 -52.48 -0.42 0.52 16 37 H 0.15 1.79 7.61 -52.49 -0.40 1.39 16 LS Contribution 314.47 15.07 4.74 4.74 Total: -1.00 -32.53 314.47 -7.47 -40.00 By element: Atomic # 1 Polarization: -0.03 SS G_CDS: -4.73 Total: -4.75 kcal Atomic # 6 Polarization: -5.71 SS G_CDS: -2.04 Total: -7.76 kcal Atomic # 7 Polarization: -39.46 SS G_CDS: 0.36 Total: -39.09 kcal Atomic # 8 Polarization: -11.81 SS G_CDS: -1.35 Total: -13.17 kcal Atomic # 14 Polarization: 24.47 SS G_CDS: -4.45 Total: 20.03 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -32.53 -7.47 -40.00 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000121066754.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.408 kcal (2) G-P(sol) polarization free energy of solvation -32.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.004 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds