Wall clock time and date at job start Tue Mar 31 2020 02:09:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46506 * 109.47318 * 2 1 4 4 C 1.36930 * 119.99722 * 274.24509 * 3 2 1 5 5 H 1.08001 * 120.00438 * 321.53810 * 4 3 2 6 6 C 1.38811 * 119.99929 * 141.53786 * 4 3 2 7 7 N 1.31614 * 120.00164 * 341.96273 * 6 4 3 8 8 Si 1.86801 * 119.99878 * 161.96825 * 6 4 3 9 9 H 1.48498 * 109.47456 * 359.97438 * 8 6 4 10 10 H 1.48507 * 109.47275 * 120.00043 * 8 6 4 11 11 H 1.48501 * 109.47224 * 239.99671 * 8 6 4 12 12 C 1.46501 * 120.00056 * 94.24511 * 3 2 1 13 13 C 1.52999 * 109.47186 * 90.00175 * 12 3 2 14 14 O 1.42901 * 109.46930 * 64.99644 * 13 12 3 15 15 C 1.35905 * 116.99452 * 179.97438 * 14 13 12 16 16 C 1.38750 * 120.05775 * 0.02562 * 15 14 13 17 17 C 1.38126 * 119.94386 * 179.97438 * 16 15 14 18 18 C 1.38284 * 120.05350 * 0.02562 * 17 16 15 19 19 C 1.38243 * 120.11527 * 359.97438 * 18 17 16 20 20 C 1.38163 * 120.05289 * 0.02562 * 19 18 17 21 21 N 1.48006 * 120.02831 * 180.02562 * 20 19 18 22 22 O 1.21802 * 119.99801 * 359.97206 * 21 20 19 23 23 O 1.21800 * 120.00244 * 179.97438 * 21 20 19 24 24 H 1.08994 * 109.47266 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.46689 * 300.00274 * 1 2 3 26 26 H 1.08996 * 109.46873 * 59.99860 * 1 2 3 27 27 H 1.09002 * 109.47150 * 239.99459 * 2 1 3 28 28 H 1.09006 * 109.47142 * 119.99612 * 2 1 3 29 29 H 0.97002 * 120.00715 * 179.97438 * 7 6 4 30 30 H 1.08999 * 109.46969 * 329.99743 * 12 3 2 31 31 H 1.08999 * 109.46934 * 210.00526 * 12 3 2 32 32 H 1.09003 * 109.46816 * 304.99931 * 13 12 3 33 33 H 1.08996 * 109.47085 * 185.00500 * 13 12 3 34 34 H 1.08002 * 120.02664 * 359.95559 * 16 15 14 35 35 H 1.08001 * 119.97281 * 179.72327 * 17 16 15 36 36 H 1.08006 * 119.94392 * 179.97438 * 18 17 16 37 37 H 1.07996 * 119.97383 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.1638 2.0559 -1.1826 5 1 2.5312 1.5397 -2.0573 6 6 1.8391 3.4035 -1.2574 7 7 1.0751 3.9485 -0.3347 8 14 2.4866 4.4433 -2.6677 9 1 3.3169 3.5997 -3.5643 10 1 1.3448 5.0053 -3.4332 11 1 3.3131 5.5520 -2.1265 12 6 2.3511 2.0406 1.2652 13 6 3.8232 1.7906 1.5989 14 8 4.6479 2.4200 0.6162 15 6 5.9926 2.2938 0.7668 16 6 6.5078 1.5783 1.8381 17 6 7.8750 1.4510 1.9886 18 6 8.7300 2.0364 1.0729 19 6 8.2192 2.7498 0.0046 20 6 6.8524 2.8801 -0.1503 21 7 6.3062 3.6435 -1.2946 22 8 7.0616 4.1577 -2.0998 23 8 5.1012 3.7576 -1.4310 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 0.8484 4.8902 -0.3866 30 1 1.7246 1.6373 2.0608 31 1 2.1763 3.1125 1.1733 32 1 4.0176 0.7180 1.6034 33 1 4.0484 2.2047 2.5817 34 1 5.8404 1.1215 2.5539 35 1 8.2766 0.8979 2.8248 36 1 9.7987 1.9361 1.1925 37 1 8.8890 3.2065 -0.7089 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000121066754.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:09:16 Heat of formation + Delta-G solvation = -3.721728 kcal Electronic energy + Delta-G solvation = -22921.510195 eV Core-core repulsion = 19475.159983 eV Total energy + Delta-G solvation = -3446.350212 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -43.05087 -41.13554 -38.86856 -37.53998 -37.26842 -33.64105 -33.06864 -32.10140 -30.93673 -29.41842 -27.36011 -26.05960 -24.63556 -23.27199 -23.07214 -21.57066 -20.41624 -19.56245 -18.82886 -18.56006 -18.42122 -17.02786 -16.79466 -16.52987 -16.17975 -15.66464 -15.46013 -15.44921 -14.71535 -14.20850 -13.84682 -13.64793 -13.24637 -13.07406 -12.97635 -12.75396 -12.60389 -12.52981 -12.42968 -12.39572 -12.10406 -11.96433 -11.88651 -11.67805 -11.49751 -11.41696 -10.58911 -10.41532 -9.51441 -8.47192 -7.73642 -5.33500 -1.07404 0.10826 0.41780 0.58107 1.46136 1.59129 1.71173 2.14106 2.39506 2.64318 3.39452 3.47436 3.65994 3.68701 3.88747 4.00990 4.11504 4.24512 4.45280 4.48565 4.53691 4.59475 4.79782 4.86217 4.92396 4.96654 5.03020 5.10665 5.16378 5.34853 5.35772 5.55344 5.61551 5.73309 5.87004 6.32380 6.59578 6.66771 7.30618 7.97647 8.43151 9.22540 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.016309 B = 0.008015 C = 0.005849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1716.380509 B = 3492.460030 C = 4785.801932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.137 3.863 3 N -0.594 5.594 4 C -0.225 4.225 5 H 0.033 0.967 6 C 0.000 4.000 7 N -0.917 5.917 8 Si 0.943 3.057 9 H -0.288 1.288 10 H -0.304 1.304 11 H -0.298 1.298 12 C 0.137 3.863 13 C 0.041 3.959 14 O -0.281 6.281 15 C 0.177 3.823 16 C -0.221 4.221 17 C -0.005 4.005 18 C -0.151 4.151 19 C -0.030 4.030 20 C -0.123 4.123 21 N 0.034 4.966 22 O -0.200 6.200 23 O -0.190 6.190 24 H 0.066 0.934 25 H 0.037 0.963 26 H 0.022 0.978 27 H 0.033 0.967 28 H 0.066 0.934 29 H 0.245 0.755 30 H 0.072 0.928 31 H 0.070 0.930 32 H 0.071 0.929 33 H 0.080 0.920 34 H 0.169 0.831 35 H 0.192 0.808 36 H 0.189 0.811 37 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.372 -8.795 11.119 20.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.012 3.988 3 N -0.315 5.315 4 C -0.356 4.356 5 H 0.050 0.950 6 C -0.197 4.197 7 N -0.563 5.563 8 Si 0.777 3.223 9 H -0.214 1.214 10 H -0.233 1.233 11 H -0.225 1.225 12 C 0.010 3.990 13 C -0.036 4.036 14 O -0.190 6.190 15 C 0.125 3.875 16 C -0.240 4.240 17 C -0.022 4.022 18 C -0.169 4.169 19 C -0.049 4.049 20 C -0.209 4.209 21 N 0.539 4.461 22 O -0.409 6.409 23 O -0.397 6.397 24 H 0.085 0.915 25 H 0.056 0.944 26 H 0.041 0.959 27 H 0.051 0.949 28 H 0.084 0.916 29 H 0.055 0.945 30 H 0.090 0.910 31 H 0.088 0.912 32 H 0.089 0.911 33 H 0.098 0.902 34 H 0.187 0.813 35 H 0.209 0.791 36 H 0.206 0.794 37 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 15.374 -8.907 11.477 21.152 hybrid contribution -0.310 1.317 -1.507 2.025 sum 15.064 -7.590 9.970 19.595 Atomic orbital electron populations 1.22113 0.98844 0.99935 1.00040 1.21041 0.92653 0.85883 0.99235 1.43940 1.74297 1.10890 1.02392 1.18689 1.34686 0.92427 0.89760 0.94979 1.25178 0.96871 0.99222 0.98467 1.69966 1.37663 1.11674 1.37012 0.85572 0.75943 0.79880 0.80894 1.21368 1.23291 1.22532 1.21038 0.89074 1.01473 0.87388 1.24060 0.92916 0.96891 0.89716 1.86758 1.12059 1.69455 1.50718 1.19535 0.85127 0.90670 0.92139 1.21738 0.98978 1.04712 0.98595 1.21993 0.90898 0.91715 0.97617 1.21581 1.03094 0.98918 0.93323 1.21269 0.89531 0.95087 0.98980 1.21068 0.95417 1.11575 0.92814 1.44105 1.00980 0.99123 1.01864 1.94351 1.56700 1.49648 1.40226 1.94669 0.97573 1.65967 1.81508 0.91547 0.94421 0.95903 0.94872 0.91576 0.94535 0.91004 0.91177 0.91085 0.90177 0.81329 0.79060 0.79360 0.81988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.76 10.22 71.98 0.74 -5.03 16 2 C 0.14 5.48 6.39 86.38 0.55 6.04 16 3 N -0.59 -29.04 2.41 -701.99 -1.69 -30.73 16 4 C -0.22 -13.00 8.98 84.03 0.75 -12.25 16 5 H 0.03 1.98 7.89 -2.91 -0.02 1.96 16 6 C 0.00 -0.02 5.03 84.86 0.43 0.40 16 7 N -0.92 -55.93 11.32 21.65 0.25 -55.69 16 8 Si 0.94 53.98 26.16 68.60 1.79 55.77 16 9 H -0.29 -16.76 7.11 99.48 0.71 -16.06 16 10 H -0.30 -16.89 7.11 99.48 0.71 -16.18 16 11 H -0.30 -17.66 7.09 99.48 0.71 -16.95 16 12 C 0.14 6.02 5.69 86.38 0.49 6.51 16 13 C 0.04 1.42 5.08 71.98 0.37 1.79 16 14 O -0.28 -12.02 7.62 -71.32 -0.54 -12.56 16 15 C 0.18 6.01 6.67 22.51 0.15 6.16 16 16 C -0.22 -4.72 9.04 22.37 0.20 -4.52 16 17 C 0.00 -0.06 10.04 22.25 0.22 0.17 16 18 C -0.15 -2.10 10.04 22.28 0.22 -1.88 16 19 C -0.03 -0.71 9.55 22.25 0.21 -0.50 16 20 C -0.12 -4.38 6.87 36.47 0.25 -4.13 16 21 N 0.03 1.56 4.45 -46.24 -0.21 1.36 16 22 O -0.20 -8.86 18.45 18.88 0.35 -8.51 16 23 O -0.19 -10.45 13.54 25.61 0.35 -10.10 16 24 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 25 H 0.04 1.46 8.14 -2.39 -0.02 1.45 16 26 H 0.02 1.00 8.14 -2.39 -0.02 0.98 16 27 H 0.03 1.35 8.07 -2.39 -0.02 1.33 16 28 H 0.07 2.17 8.04 -2.38 -0.02 2.15 16 29 H 0.25 14.76 8.31 -92.71 -0.77 13.99 16 30 H 0.07 2.76 8.07 -2.39 -0.02 2.74 16 31 H 0.07 3.76 5.44 -2.39 -0.01 3.75 16 32 H 0.07 2.12 7.66 -2.39 -0.02 2.10 16 33 H 0.08 2.21 7.66 -2.39 -0.02 2.19 16 34 H 0.17 2.80 6.30 -2.91 -0.02 2.78 16 35 H 0.19 0.57 8.06 -2.91 -0.02 0.55 16 36 H 0.19 0.94 8.06 -2.91 -0.02 0.91 16 37 H 0.16 3.41 7.61 -2.91 -0.02 3.39 16 Total: -1.00 -80.57 314.47 5.96 -74.61 By element: Atomic # 1 Polarization: -7.98 SS G_CDS: 1.07 Total: -6.91 kcal Atomic # 6 Polarization: -11.83 SS G_CDS: 4.59 Total: -7.24 kcal Atomic # 7 Polarization: -83.40 SS G_CDS: -1.65 Total: -85.06 kcal Atomic # 8 Polarization: -31.33 SS G_CDS: 0.15 Total: -31.18 kcal Atomic # 14 Polarization: 53.98 SS G_CDS: 1.79 Total: 55.77 kcal Total: -80.57 5.96 -74.61 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000121066754.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.893 kcal (2) G-P(sol) polarization free energy of solvation -80.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.614 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds