Wall clock time and date at job start Tue Mar 31 2020 02:09:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46494 * 109.47217 * 2 1 4 4 C 1.36935 * 120.00062 * 82.95860 * 3 2 1 5 5 H 1.08002 * 120.00422 * 170.97351 * 4 3 2 6 6 C 1.38811 * 120.00148 * 350.97044 * 4 3 2 7 7 N 1.31621 * 119.99555 * 1.73634 * 6 4 3 8 8 Si 1.86799 * 120.00252 * 181.73210 * 6 4 3 9 9 H 1.48498 * 109.47004 * 90.00377 * 8 6 4 10 10 H 1.48507 * 109.46996 * 209.99978 * 8 6 4 11 11 H 1.48493 * 109.47368 * 330.00045 * 8 6 4 12 12 C 1.46505 * 120.00269 * 262.95857 * 3 2 1 13 13 C 1.53000 * 109.46830 * 273.09769 * 12 3 2 14 14 O 1.42902 * 109.47064 * 66.68309 * 13 12 3 15 15 C 1.35899 * 117.00303 * 179.97438 * 14 13 12 16 16 C 1.38732 * 120.05774 * 179.97438 * 15 14 13 17 17 C 1.38145 * 119.93997 * 180.02562 * 16 15 14 18 18 C 1.38265 * 120.06207 * 0.02562 * 17 16 15 19 19 N 1.48002 * 119.94754 * 179.97438 * 18 17 16 20 20 O 1.21799 * 120.00046 * 0.02562 * 19 18 17 21 21 O 1.21803 * 119.99936 * 179.72930 * 19 18 17 22 22 C 1.38265 * 120.10523 * 0.25882 * 18 17 16 23 23 C 1.38147 * 120.06113 * 359.44543 * 22 18 17 24 24 H 1.09002 * 109.47484 * 186.84490 * 1 2 3 25 25 H 1.08999 * 109.46979 * 306.84979 * 1 2 3 26 26 H 1.09004 * 109.46834 * 66.84487 * 1 2 3 27 27 H 1.09003 * 109.46832 * 240.00067 * 2 1 3 28 28 H 1.08996 * 109.47228 * 120.00274 * 2 1 3 29 29 H 0.97003 * 119.99749 * 180.02562 * 7 6 4 30 30 H 1.08998 * 109.47142 * 153.10164 * 12 3 2 31 31 H 1.08998 * 109.47141 * 33.09701 * 12 3 2 32 32 H 1.08995 * 109.47687 * 306.68239 * 13 12 3 33 33 H 1.09003 * 109.46806 * 186.67510 * 13 12 3 34 34 H 1.07998 * 120.02802 * 0.02562 * 16 15 14 35 35 H 1.08005 * 119.97117 * 179.97438 * 17 16 15 36 36 H 1.08007 * 119.97014 * 179.72729 * 22 18 17 37 37 H 1.07998 * 120.03110 * 180.24875 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1095 2.0751 1.1769 5 1 2.6028 3.0356 1.2007 6 6 1.5679 1.5442 2.3395 7 7 0.9968 0.3585 2.3177 8 14 1.6495 2.5124 3.9349 9 1 0.4412 3.3668 4.0578 10 1 1.7091 1.5715 5.0824 11 1 2.8629 3.3683 3.9331 12 6 2.4092 2.0200 -1.2592 13 6 3.8750 1.7006 -1.5595 14 8 4.0133 0.3033 -1.8252 15 6 5.2619 -0.1495 -2.1130 16 6 5.4686 -1.4950 -2.3807 17 6 6.7389 -1.9527 -2.6724 18 6 7.8040 -1.0713 -2.6973 19 7 9.1640 -1.5646 -3.0096 20 8 9.3443 -2.7460 -3.2449 21 8 10.1021 -0.7882 -3.0367 22 6 7.6015 0.2690 -2.4252 23 6 6.3321 0.7330 -2.1388 24 1 -0.3634 -1.0203 0.1225 25 1 -0.3633 0.6163 0.8223 26 1 -0.3633 0.4041 -0.9449 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8899 29 1 0.6180 -0.0123 3.1300 30 1 2.2827 3.0992 -1.1736 31 1 1.7823 1.6436 -2.0675 32 1 4.4891 1.9694 -0.7001 33 1 4.1998 2.2698 -2.4305 34 1 4.6371 -2.1839 -2.3609 35 1 6.9005 -3.0001 -2.8804 36 1 8.4357 0.9548 -2.4409 37 1 6.1738 1.7807 -1.9303 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000121074580.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:09:19 Heat of formation + Delta-G solvation = 18.914777 kcal Electronic energy + Delta-G solvation = -21534.994019 eV Core-core repulsion = 18089.625399 eV Total energy + Delta-G solvation = -3445.368619 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.13266 -40.31086 -37.81415 -36.53148 -35.99447 -32.18564 -31.54690 -30.94835 -29.84807 -27.95260 -26.02695 -24.43253 -23.33817 -22.50163 -21.65724 -20.09304 -19.35707 -18.62364 -18.30402 -17.49750 -16.76480 -16.04057 -15.91848 -15.11883 -14.94089 -14.06077 -14.01407 -13.68585 -13.46182 -13.30103 -12.86412 -12.52670 -11.95748 -11.71216 -11.54750 -11.32292 -11.17635 -11.16363 -11.14003 -10.97755 -10.78297 -10.69927 -10.48719 -9.94900 -9.69582 -9.60282 -9.54032 -8.71897 -8.42213 -6.95327 -5.69387 -3.22848 -0.08677 0.81909 1.40098 1.46506 3.12545 3.22168 3.30826 3.36522 3.38499 4.26421 4.35680 4.37953 4.59600 4.82635 5.08666 5.12584 5.24912 5.38933 5.46327 5.50181 5.63954 5.74157 5.77890 5.91739 6.01508 6.21945 6.43143 6.43508 6.66890 7.01533 7.10952 7.27249 7.27623 7.54534 7.67881 7.89835 8.13331 8.39271 9.19704 9.78084 10.20679 11.20831 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.024742 B = 0.003694 C = 0.003554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1131.412292 B = 7578.234266 C = 7877.657853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.170 3.830 3 N -0.598 5.598 4 C -0.250 4.250 5 H 0.072 0.928 6 C -0.005 4.005 7 N -0.904 5.904 8 Si 0.909 3.091 9 H -0.288 1.288 10 H -0.291 1.291 11 H -0.282 1.282 12 C 0.151 3.849 13 C 0.027 3.973 14 O -0.278 6.278 15 C 0.202 3.798 16 C -0.158 4.158 17 C -0.015 4.015 18 C -0.102 4.102 19 N 0.041 4.959 20 O -0.175 6.175 21 O -0.177 6.177 22 C -0.010 4.010 23 C -0.216 4.216 24 H 0.020 0.980 25 H 0.083 0.917 26 H -0.003 1.003 27 H 0.006 0.994 28 H 0.098 0.902 29 H 0.249 0.751 30 H 0.074 0.926 31 H 0.049 0.951 32 H 0.069 0.931 33 H 0.053 0.947 34 H 0.155 0.845 35 H 0.156 0.844 36 H 0.151 0.849 37 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.712 -0.507 -9.983 12.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.046 3.954 3 N -0.319 5.319 4 C -0.379 4.379 5 H 0.090 0.910 6 C -0.201 4.201 7 N -0.551 5.551 8 Si 0.740 3.260 9 H -0.216 1.216 10 H -0.217 1.217 11 H -0.208 1.208 12 C 0.021 3.979 13 C -0.051 4.051 14 O -0.188 6.188 15 C 0.152 3.848 16 C -0.177 4.177 17 C -0.034 4.034 18 C -0.186 4.186 19 N 0.556 4.444 20 O -0.388 6.388 21 O -0.390 6.390 22 C -0.030 4.030 23 C -0.235 4.235 24 H 0.039 0.961 25 H 0.101 0.899 26 H 0.016 0.984 27 H 0.024 0.976 28 H 0.116 0.884 29 H 0.061 0.939 30 H 0.092 0.908 31 H 0.068 0.932 32 H 0.087 0.913 33 H 0.071 0.929 34 H 0.172 0.828 35 H 0.173 0.827 36 H 0.169 0.831 37 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 6.776 -0.453 -9.630 11.784 hybrid contribution 0.490 0.611 0.838 1.147 sum 7.267 0.159 -8.792 11.407 Atomic orbital electron populations 1.22375 0.99414 0.98988 0.98546 1.21018 0.92172 0.83679 0.98514 1.44202 1.74865 1.11689 1.01173 1.19329 1.30889 1.01539 0.86182 0.90968 1.24846 0.99729 0.97303 0.98266 1.70259 1.42525 1.16181 1.26144 0.86177 0.77669 0.78897 0.83287 1.21551 1.21676 1.20813 1.20832 0.89410 0.97385 0.90225 1.24412 1.04560 0.76931 0.99164 1.86343 1.23462 1.28770 1.80207 1.19653 0.85528 0.93079 0.86584 1.20494 0.97199 0.93846 1.06192 1.20781 0.89857 1.00390 0.92360 1.20880 0.82314 0.95721 1.19674 1.43536 1.03081 1.00515 0.97244 1.94511 1.90955 1.00640 1.52736 1.94511 1.34416 1.53586 1.56509 1.20770 0.98258 0.92754 0.91180 1.21349 0.91491 1.01553 1.09102 0.96128 0.89858 0.98410 0.97594 0.88417 0.93926 0.90766 0.93244 0.91273 0.92897 0.82752 0.82684 0.83106 0.83129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 32. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.09 9.28 37.16 0.34 -2.75 16 2 C 0.17 3.98 5.48 -4.04 -0.02 3.95 16 3 N -0.60 -13.64 2.53 -173.24 -0.44 -14.08 16 4 C -0.25 -6.28 9.76 -15.06 -0.15 -6.42 16 5 H 0.07 1.74 7.83 -52.49 -0.41 1.33 16 6 C -0.01 -0.14 5.18 -17.43 -0.09 -0.23 16 7 N -0.90 -24.17 7.30 55.49 0.40 -23.76 16 8 Si 0.91 20.74 29.55 -169.99 -5.02 15.72 16 9 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 10 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 11 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 12 C 0.15 2.66 6.06 -4.04 -0.02 2.64 16 13 C 0.03 0.40 5.08 37.16 0.19 0.59 16 14 O -0.28 -4.36 8.87 -19.42 -0.17 -4.53 16 15 C 0.20 2.68 6.69 -39.21 -0.26 2.42 16 16 C -0.16 -1.88 9.99 -39.43 -0.39 -2.27 16 17 C -0.01 -0.17 9.55 -39.61 -0.38 -0.55 16 18 C -0.10 -1.29 6.85 -79.94 -0.55 -1.84 16 19 N 0.04 0.59 4.45 33.97 0.15 0.74 16 20 O -0.17 -2.59 18.44 -29.46 -0.54 -3.13 16 21 O -0.18 -2.64 18.44 -29.46 -0.54 -3.18 16 22 C -0.01 -0.12 9.55 -39.60 -0.38 -0.50 16 23 C -0.22 -2.51 9.04 -39.43 -0.36 -2.86 16 24 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 25 H 0.08 2.17 6.07 -51.93 -0.32 1.85 16 26 H 0.00 -0.07 8.14 -51.93 -0.42 -0.49 16 27 H 0.01 0.13 7.01 -51.93 -0.36 -0.24 16 28 H 0.10 2.59 5.91 -51.93 -0.31 2.28 16 29 H 0.25 6.59 8.31 -40.82 -0.34 6.25 16 30 H 0.07 1.22 8.01 -51.93 -0.42 0.80 16 31 H 0.05 0.84 8.10 -51.93 -0.42 0.42 16 32 H 0.07 1.08 7.66 -51.93 -0.40 0.68 16 33 H 0.05 0.61 7.66 -51.93 -0.40 0.21 16 34 H 0.15 1.63 8.06 -52.49 -0.42 1.21 16 35 H 0.16 1.48 7.61 -52.48 -0.40 1.08 16 36 H 0.15 1.47 7.61 -52.48 -0.40 1.07 16 37 H 0.15 1.51 6.30 -52.49 -0.33 1.18 16 LS Contribution 315.84 15.07 4.76 4.76 Total: -1.00 -28.12 315.84 -8.03 -36.16 By element: Atomic # 1 Polarization: 3.68 SS G_CDS: -4.56 Total: -0.88 kcal Atomic # 6 Polarization: -5.74 SS G_CDS: -2.07 Total: -7.81 kcal Atomic # 7 Polarization: -37.22 SS G_CDS: 0.12 Total: -37.10 kcal Atomic # 8 Polarization: -9.59 SS G_CDS: -1.26 Total: -10.84 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -28.12 -8.03 -36.16 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000121074580.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.072 kcal (2) G-P(sol) polarization free energy of solvation -28.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.157 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds