Wall clock time and date at job start Tue Mar 31 2020 02:09:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46494 * 109.47217 * 2 1 4 4 C 1.36935 * 120.00062 * 82.95860 * 3 2 1 5 5 H 1.08002 * 120.00422 * 170.97351 * 4 3 2 6 6 C 1.38811 * 120.00148 * 350.97044 * 4 3 2 7 7 N 1.31621 * 119.99555 * 1.73634 * 6 4 3 8 8 Si 1.86799 * 120.00252 * 181.73210 * 6 4 3 9 9 H 1.48498 * 109.47004 * 90.00377 * 8 6 4 10 10 H 1.48507 * 109.46996 * 209.99978 * 8 6 4 11 11 H 1.48493 * 109.47368 * 330.00045 * 8 6 4 12 12 C 1.46505 * 120.00269 * 262.95857 * 3 2 1 13 13 C 1.53000 * 109.46830 * 273.09769 * 12 3 2 14 14 O 1.42902 * 109.47064 * 66.68309 * 13 12 3 15 15 C 1.35899 * 117.00303 * 179.97438 * 14 13 12 16 16 C 1.38732 * 120.05774 * 179.97438 * 15 14 13 17 17 C 1.38145 * 119.93997 * 180.02562 * 16 15 14 18 18 C 1.38265 * 120.06207 * 0.02562 * 17 16 15 19 19 N 1.48002 * 119.94754 * 179.97438 * 18 17 16 20 20 O 1.21799 * 120.00046 * 0.02562 * 19 18 17 21 21 O 1.21803 * 119.99936 * 179.72930 * 19 18 17 22 22 C 1.38265 * 120.10523 * 0.25882 * 18 17 16 23 23 C 1.38147 * 120.06113 * 359.44543 * 22 18 17 24 24 H 1.09002 * 109.47484 * 186.84490 * 1 2 3 25 25 H 1.08999 * 109.46979 * 306.84979 * 1 2 3 26 26 H 1.09004 * 109.46834 * 66.84487 * 1 2 3 27 27 H 1.09003 * 109.46832 * 240.00067 * 2 1 3 28 28 H 1.08996 * 109.47228 * 120.00274 * 2 1 3 29 29 H 0.97003 * 119.99749 * 180.02562 * 7 6 4 30 30 H 1.08998 * 109.47142 * 153.10164 * 12 3 2 31 31 H 1.08998 * 109.47141 * 33.09701 * 12 3 2 32 32 H 1.08995 * 109.47687 * 306.68239 * 13 12 3 33 33 H 1.09003 * 109.46806 * 186.67510 * 13 12 3 34 34 H 1.07998 * 120.02802 * 0.02562 * 16 15 14 35 35 H 1.08005 * 119.97117 * 179.97438 * 17 16 15 36 36 H 1.08007 * 119.97014 * 179.72729 * 22 18 17 37 37 H 1.07998 * 120.03110 * 180.24875 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1095 2.0751 1.1769 5 1 2.6028 3.0356 1.2007 6 6 1.5679 1.5442 2.3395 7 7 0.9968 0.3585 2.3177 8 14 1.6495 2.5124 3.9349 9 1 0.4412 3.3668 4.0578 10 1 1.7091 1.5715 5.0824 11 1 2.8629 3.3683 3.9331 12 6 2.4092 2.0200 -1.2592 13 6 3.8750 1.7006 -1.5595 14 8 4.0133 0.3033 -1.8252 15 6 5.2619 -0.1495 -2.1130 16 6 5.4686 -1.4950 -2.3807 17 6 6.7389 -1.9527 -2.6724 18 6 7.8040 -1.0713 -2.6973 19 7 9.1640 -1.5646 -3.0096 20 8 9.3443 -2.7460 -3.2449 21 8 10.1021 -0.7882 -3.0367 22 6 7.6015 0.2690 -2.4252 23 6 6.3321 0.7330 -2.1388 24 1 -0.3634 -1.0203 0.1225 25 1 -0.3633 0.6163 0.8223 26 1 -0.3633 0.4041 -0.9449 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8899 29 1 0.6180 -0.0123 3.1300 30 1 2.2827 3.0992 -1.1736 31 1 1.7823 1.6436 -2.0675 32 1 4.4891 1.9694 -0.7001 33 1 4.1998 2.2698 -2.4305 34 1 4.6371 -2.1839 -2.3609 35 1 6.9005 -3.0001 -2.8804 36 1 8.4357 0.9548 -2.4409 37 1 6.1738 1.7807 -1.9303 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000121074580.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:09:18 Heat of formation + Delta-G solvation = 5.492938 kcal Electronic energy + Delta-G solvation = -21535.576033 eV Core-core repulsion = 18089.625399 eV Total energy + Delta-G solvation = -3445.950634 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -43.20620 -41.34011 -38.93620 -37.64501 -37.63718 -33.71195 -32.56287 -32.13920 -31.50797 -29.52762 -27.12564 -25.99924 -24.64897 -23.66459 -22.91010 -21.75547 -20.35995 -19.71913 -19.41374 -18.57759 -18.50440 -17.38073 -17.03796 -16.54221 -15.99974 -15.47765 -15.24991 -14.91115 -14.84700 -14.50206 -14.15220 -13.90062 -13.54859 -13.09165 -12.93560 -12.79356 -12.69049 -12.46922 -12.34418 -12.28082 -12.27961 -12.19322 -12.06102 -11.67800 -11.51220 -11.36064 -10.49444 -10.31902 -9.74122 -8.76574 -7.61742 -5.13817 -1.14745 -0.07209 0.35630 0.43701 1.49533 1.51371 1.57779 2.07425 2.27718 2.54379 3.35330 3.40275 3.48809 3.64775 3.67814 3.90417 4.21532 4.23422 4.39512 4.44554 4.48787 4.64854 4.74404 4.82674 4.87534 4.96770 5.07525 5.12054 5.19800 5.30396 5.38953 5.43211 5.61518 5.98403 6.22711 6.23712 6.48809 6.54569 7.28298 7.98075 8.36377 9.27029 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.024742 B = 0.003694 C = 0.003554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1131.412292 B = 7578.234266 C = 7877.657853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.179 3.821 3 N -0.615 5.615 4 C -0.249 4.249 5 H 0.081 0.919 6 C -0.059 4.059 7 N -0.925 5.925 8 Si 0.963 3.037 9 H -0.292 1.292 10 H -0.302 1.302 11 H -0.273 1.273 12 C 0.144 3.856 13 C 0.036 3.964 14 O -0.301 6.301 15 C 0.186 3.814 16 C -0.159 4.159 17 C -0.010 4.010 18 C -0.112 4.112 19 N 0.041 4.959 20 O -0.188 6.188 21 O -0.190 6.190 22 C -0.007 4.007 23 C -0.209 4.209 24 H 0.024 0.976 25 H 0.052 0.948 26 H 0.010 0.990 27 H 0.021 0.979 28 H 0.063 0.937 29 H 0.239 0.761 30 H 0.087 0.913 31 H 0.056 0.944 32 H 0.060 0.940 33 H 0.094 0.906 34 H 0.165 0.835 35 H 0.172 0.828 36 H 0.169 0.831 37 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.461 0.462 -11.065 13.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.055 3.945 3 N -0.337 5.337 4 C -0.379 4.379 5 H 0.099 0.901 6 C -0.252 4.252 7 N -0.575 5.575 8 Si 0.794 3.206 9 H -0.219 1.219 10 H -0.229 1.229 11 H -0.198 1.198 12 C 0.017 3.983 13 C -0.041 4.041 14 O -0.212 6.212 15 C 0.137 3.863 16 C -0.178 4.178 17 C -0.029 4.029 18 C -0.196 4.196 19 N 0.553 4.447 20 O -0.400 6.400 21 O -0.401 6.401 22 C -0.026 4.026 23 C -0.229 4.229 24 H 0.043 0.957 25 H 0.071 0.929 26 H 0.029 0.971 27 H 0.039 0.961 28 H 0.081 0.919 29 H 0.050 0.950 30 H 0.105 0.895 31 H 0.075 0.925 32 H 0.078 0.922 33 H 0.112 0.888 34 H 0.183 0.817 35 H 0.190 0.810 36 H 0.186 0.814 37 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 7.568 0.535 -10.755 13.162 hybrid contribution 0.278 0.313 1.082 1.160 sum 7.846 0.848 -9.673 12.484 Atomic orbital electron populations 1.22205 0.99425 0.98686 0.97825 1.20737 0.92081 0.84292 0.97436 1.44349 1.75438 1.11526 1.02387 1.19664 1.29560 1.01611 0.87058 0.90129 1.25473 1.00664 0.98257 1.00810 1.70467 1.43819 1.17328 1.25854 0.85315 0.77626 0.77540 0.80166 1.21895 1.22925 1.19777 1.21068 0.91209 0.97903 0.88115 1.24098 1.01913 0.77402 1.00658 1.86273 1.24873 1.29107 1.80964 1.19854 0.85153 0.93854 0.87427 1.20652 0.97646 0.93744 1.05804 1.20956 0.89256 1.01133 0.91507 1.21103 0.81561 0.96573 1.20404 1.43767 1.03623 1.00366 0.96927 1.94502 1.91264 1.00963 1.53272 1.94499 1.35118 1.53523 1.56939 1.20983 0.98792 0.92543 0.90329 1.21510 0.90877 1.02223 1.08254 0.95665 0.92926 0.97076 0.96084 0.91888 0.95026 0.89501 0.92545 0.92198 0.88783 0.81748 0.81048 0.81397 0.81303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.60 9.28 71.98 0.67 -4.93 16 2 C 0.18 8.31 5.48 86.38 0.47 8.79 16 3 N -0.61 -27.37 2.53 -702.01 -1.78 -29.15 16 4 C -0.25 -12.29 9.76 84.03 0.82 -11.47 16 5 H 0.08 3.75 7.83 -2.91 -0.02 3.73 16 6 C -0.06 -3.05 5.18 84.86 0.44 -2.61 16 7 N -0.93 -50.48 7.30 21.65 0.16 -50.32 16 8 Si 0.96 42.84 29.55 68.60 2.03 44.87 16 9 H -0.29 -12.98 7.11 99.48 0.71 -12.27 16 10 H -0.30 -13.88 7.11 99.48 0.71 -13.18 16 11 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 12 C 0.14 4.74 6.06 86.38 0.52 5.27 16 13 C 0.04 0.96 5.08 71.98 0.37 1.33 16 14 O -0.30 -8.76 8.87 -92.42 -0.82 -9.58 16 15 C 0.19 4.53 6.69 22.51 0.15 4.68 16 16 C -0.16 -3.47 9.99 22.37 0.22 -3.25 16 17 C -0.01 -0.20 9.55 22.25 0.21 0.01 16 18 C -0.11 -2.63 6.85 36.39 0.25 -2.38 16 19 N 0.04 1.13 4.45 -46.44 -0.21 0.93 16 20 O -0.19 -5.39 18.44 18.89 0.35 -5.04 16 21 O -0.19 -5.41 18.44 18.88 0.35 -5.06 16 22 C -0.01 -0.15 9.55 22.25 0.21 0.06 16 23 C -0.21 -4.27 9.04 22.37 0.20 -4.07 16 24 H 0.02 1.08 8.14 -2.39 -0.02 1.06 16 25 H 0.05 2.76 6.07 -2.39 -0.01 2.74 16 26 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 27 H 0.02 0.89 7.01 -2.39 -0.02 0.88 16 28 H 0.06 3.39 5.91 -2.39 -0.01 3.38 16 29 H 0.24 13.02 8.31 -92.71 -0.77 12.25 16 30 H 0.09 2.61 8.01 -2.39 -0.02 2.60 16 31 H 0.06 1.78 8.10 -2.39 -0.02 1.76 16 32 H 0.06 1.71 7.66 -2.39 -0.02 1.69 16 33 H 0.09 1.74 7.66 -2.39 -0.02 1.72 16 34 H 0.16 3.18 8.06 -2.91 -0.02 3.16 16 35 H 0.17 2.93 7.61 -2.91 -0.02 2.91 16 36 H 0.17 2.81 7.61 -2.91 -0.02 2.79 16 37 H 0.17 2.77 6.30 -2.91 -0.02 2.75 16 Total: -1.00 -60.06 315.84 5.70 -54.36 By element: Atomic # 1 Polarization: 6.48 SS G_CDS: 1.08 Total: 7.56 kcal Atomic # 6 Polarization: -13.11 SS G_CDS: 4.54 Total: -8.57 kcal Atomic # 7 Polarization: -76.72 SS G_CDS: -1.83 Total: -78.54 kcal Atomic # 8 Polarization: -19.55 SS G_CDS: -0.12 Total: -19.68 kcal Atomic # 14 Polarization: 42.84 SS G_CDS: 2.03 Total: 44.87 kcal Total: -60.06 5.70 -54.36 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000121074580.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.854 kcal (2) G-P(sol) polarization free energy of solvation -60.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.361 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds