Wall clock time and date at job start Tue Mar 31 2020 02:03:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 N 1.46500 * 109.47473 * 239.99757 * 2 1 3 5 5 C 1.34780 * 119.99910 * 85.00011 * 4 2 1 6 6 O 1.21614 * 119.99756 * 0.02562 * 5 4 2 7 7 C 1.47371 * 120.00089 * 180.02562 * 5 4 2 8 8 C 1.47026 * 127.19548 * 180.02562 * 7 5 4 9 9 C 1.34168 * 105.95488 * 179.97438 * 8 7 5 10 10 O 1.34216 * 109.12894 * 359.97438 * 9 8 7 11 11 C 1.33650 * 110.90354 * 359.76680 * 10 9 8 12 12 C 1.50708 * 109.47141 * 119.99670 * 2 1 3 13 13 O 1.21282 * 119.99544 * 119.99884 * 12 2 1 14 14 N 1.34774 * 120.00011 * 300.00244 * 12 2 1 15 15 C 1.46502 * 120.00006 * 359.97438 * 14 12 2 16 16 C 1.46500 * 119.99881 * 179.97438 * 14 12 2 17 17 C 1.50700 * 109.47003 * 90.00049 * 16 14 12 18 18 H 1.08004 * 120.00201 * 359.97438 * 17 16 14 19 19 C 1.37874 * 119.99836 * 180.02562 * 17 16 14 20 20 N 1.31519 * 119.99875 * 180.02562 * 19 17 16 21 21 Si 1.86798 * 120.00256 * 359.97438 * 19 17 16 22 22 H 1.48498 * 109.47291 * 90.00054 * 21 19 17 23 23 H 1.48500 * 109.47218 * 210.00259 * 21 19 17 24 24 H 1.48501 * 109.46782 * 330.00133 * 21 19 17 25 25 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 27 27 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 28 28 H 0.96994 * 119.99975 * 265.00388 * 4 2 1 29 29 H 1.08002 * 127.01837 * 359.97438 * 8 7 5 30 30 H 1.08004 * 125.43884 * 180.02562 * 9 8 7 31 31 H 1.08006 * 125.79776 * 180.26764 * 11 10 9 32 32 H 1.09005 * 109.46966 * 89.99945 * 15 14 12 33 33 H 1.09001 * 109.47307 * 210.00012 * 15 14 12 34 34 H 1.09000 * 109.47042 * 329.99997 * 15 14 12 35 35 H 1.08998 * 109.47195 * 209.99758 * 16 14 12 36 36 H 1.09004 * 109.46838 * 330.00163 * 16 14 12 37 37 H 0.97004 * 119.99890 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1961 5 6 2.1471 -0.0183 -2.3571 6 8 1.8583 1.1618 -2.4116 7 6 2.6379 -0.7131 -3.5605 8 6 2.8384 -0.1387 -4.8989 9 6 3.2951 -1.1405 -5.6657 10 8 3.3888 -2.2548 -4.9235 11 6 3.0074 -2.0223 -3.6638 12 6 2.0323 -0.7104 1.2306 13 8 2.7296 -1.6965 1.1192 14 7 1.7067 -0.2499 2.4546 15 6 0.8649 0.9416 2.5890 16 6 2.1946 -0.9408 3.6508 17 6 3.5223 -0.3578 4.0612 18 1 3.9592 0.4467 3.4881 19 6 4.1797 -0.8520 5.1677 20 7 5.3382 -0.3429 5.5262 21 14 3.4245 -2.2438 6.1587 22 1 3.8836 -3.5461 5.6126 23 1 3.8453 -2.1261 7.5779 24 1 1.9440 -2.1655 6.0732 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 0.5139 0.8900 28 1 2.2490 -1.6317 -1.1525 29 1 2.6555 0.8815 -5.2028 30 1 3.5478 -1.0626 -6.7129 31 1 2.9919 -2.7481 -2.8642 32 1 -0.1833 0.6440 2.6221 33 1 1.1227 1.4668 3.5086 34 1 1.0288 1.6003 1.7362 35 1 1.4766 -0.8152 4.4612 36 1 2.3154 -2.0021 3.4335 37 1 5.8009 -0.6908 6.3045 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000126719672.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:03:29 Heat of formation + Delta-G solvation = -42.788184 kcal Electronic energy + Delta-G solvation = -21617.038574 eV Core-core repulsion = 18168.994313 eV Total energy + Delta-G solvation = -3448.044261 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.71222 -40.10145 -38.71480 -35.23752 -34.85157 -33.13957 -32.61583 -31.12513 -29.62429 -28.18677 -26.37340 -24.69725 -23.46987 -21.83719 -21.60200 -20.12575 -19.26987 -18.29258 -17.01313 -16.70743 -16.36966 -16.28925 -15.64220 -15.24321 -15.01154 -14.69327 -14.58409 -13.82860 -13.53167 -13.39892 -13.11571 -13.02274 -12.57156 -12.45096 -12.36112 -12.15435 -11.75595 -11.58612 -11.30284 -10.98023 -10.57663 -10.21500 -10.06886 -9.99857 -9.60603 -9.33975 -9.06237 -8.94465 -8.63589 -7.84226 -6.12844 -4.12621 1.19237 1.89268 2.71438 2.98435 3.11172 3.25581 3.31536 3.32895 3.33659 3.78706 4.35073 4.41374 4.50648 4.74645 4.92159 5.13757 5.19327 5.23181 5.31651 5.45302 5.49081 5.64087 5.70163 5.74904 5.85714 6.02536 6.07708 6.21019 6.34587 6.61235 6.73769 6.84393 7.18377 7.51202 7.54432 8.04546 8.21375 8.40086 8.73557 8.90829 9.46313 11.00435 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.024921 B = 0.003867 C = 0.003598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1123.298145 B = 7239.681178 C = 7780.590678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.126 3.874 3 H 0.112 0.888 4 N -0.705 5.705 5 C 0.590 3.410 6 O -0.540 6.540 7 C -0.233 4.233 8 C -0.164 4.164 9 C -0.044 4.044 10 O -0.175 6.175 11 C 0.026 3.974 12 C 0.506 3.494 13 O -0.539 6.539 14 N -0.589 5.589 15 C 0.076 3.924 16 C 0.216 3.784 17 C -0.532 4.532 18 H 0.075 0.925 19 C 0.073 3.927 20 N -0.896 5.896 21 Si 0.877 3.123 22 H -0.273 1.273 23 H -0.284 1.284 24 H -0.266 1.266 25 H 0.061 0.939 26 H 0.069 0.931 27 H 0.084 0.916 28 H 0.407 0.593 29 H 0.160 0.840 30 H 0.208 0.792 31 H 0.214 0.786 32 H 0.053 0.947 33 H 0.079 0.921 34 H 0.065 0.935 35 H 0.033 0.967 36 H 0.038 0.962 37 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.976 -1.540 -17.650 20.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.017 3.983 3 H 0.130 0.870 4 N -0.358 5.358 5 C 0.378 3.622 6 O -0.418 6.418 7 C -0.238 4.238 8 C -0.184 4.184 9 C -0.110 4.110 10 O -0.070 6.070 11 C -0.045 4.045 12 C 0.291 3.709 13 O -0.417 6.417 14 N -0.320 5.320 15 C -0.068 4.068 16 C 0.095 3.905 17 C -0.571 4.571 18 H 0.093 0.907 19 C -0.130 4.130 20 N -0.534 5.534 21 Si 0.704 3.296 22 H -0.199 1.199 23 H -0.210 1.210 24 H -0.190 1.190 25 H 0.080 0.920 26 H 0.088 0.912 27 H 0.103 0.897 28 H 0.243 0.757 29 H 0.177 0.823 30 H 0.225 0.775 31 H 0.230 0.770 32 H 0.071 0.929 33 H 0.098 0.902 34 H 0.084 0.916 35 H 0.051 0.949 36 H 0.056 0.944 37 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -9.571 -1.496 -17.667 20.149 hybrid contribution -0.087 -0.811 0.775 1.125 sum -9.658 -2.307 -16.892 19.595 Atomic orbital electron populations 1.22367 0.93191 1.03147 1.04026 1.20796 0.95454 0.98185 0.83836 0.86985 1.45576 1.67132 1.14660 1.08429 1.17214 0.77135 0.86056 0.81826 1.90771 1.50719 1.15302 1.85028 1.21501 1.11912 0.94616 0.95771 1.22778 1.03656 1.00875 0.91048 1.23939 1.05819 0.83462 0.97796 1.83802 1.66626 1.36726 1.19810 1.24584 0.97673 0.96944 0.85286 1.20241 0.80943 0.85170 0.84549 1.90651 1.37956 1.27038 1.86063 1.47744 1.49542 1.28274 1.06437 1.21925 0.93634 0.87807 1.03425 1.19717 0.95486 0.93669 0.81584 1.21316 1.03079 1.20486 1.12194 0.90720 1.24866 0.94627 0.96489 0.97012 1.69901 1.14755 1.42198 1.26529 0.86836 0.79998 0.83170 0.79575 1.19904 1.21013 1.19045 0.92008 0.91232 0.89712 0.75659 0.82286 0.77512 0.76977 0.92865 0.90237 0.91635 0.94927 0.94438 0.92488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.07 9.12 37.16 0.34 -1.73 16 2 C 0.13 1.94 2.18 -69.08 -0.15 1.78 16 3 H 0.11 1.80 6.83 -51.93 -0.35 1.45 16 4 N -0.71 -10.22 4.94 -56.02 -0.28 -10.50 16 5 C 0.59 8.86 7.78 -12.54 -0.10 8.76 16 6 O -0.54 -9.63 16.65 5.27 0.09 -9.55 16 7 C -0.23 -2.91 6.31 -103.28 -0.65 -3.56 16 8 C -0.16 -1.76 11.01 -37.46 -0.41 -2.17 16 9 C -0.04 -0.37 12.03 29.30 0.35 -0.02 16 10 O -0.17 -1.70 10.52 7.65 0.08 -1.62 16 11 C 0.03 0.26 11.61 30.08 0.35 0.60 16 12 C 0.51 9.84 7.14 -10.98 -0.08 9.76 16 13 O -0.54 -12.30 15.42 5.56 0.09 -12.21 16 14 N -0.59 -11.63 2.86 -182.95 -0.52 -12.15 16 15 C 0.08 1.11 8.80 59.85 0.53 1.64 16 16 C 0.22 5.11 4.23 -5.19 -0.02 5.09 16 17 C -0.53 -15.09 9.94 -34.44 -0.34 -15.43 16 18 H 0.07 2.34 8.06 -52.48 -0.42 1.92 16 19 C 0.07 2.09 5.47 -17.82 -0.10 2.00 16 20 N -0.90 -27.43 13.96 55.43 0.77 -26.66 16 21 Si 0.88 21.15 27.47 -169.99 -4.67 16.48 16 22 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 23 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 24 H -0.27 -5.98 6.54 56.52 0.37 -5.61 16 25 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 26 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 27 H 0.08 0.92 4.53 -51.93 -0.24 0.68 16 28 H 0.41 5.41 6.76 -40.82 -0.28 5.14 16 29 H 0.16 1.57 8.06 -52.49 -0.42 1.14 16 30 H 0.21 0.86 8.06 -52.48 -0.42 0.44 16 31 H 0.21 1.52 7.47 -52.48 -0.39 1.12 16 32 H 0.05 0.62 6.95 -51.93 -0.36 0.26 16 33 H 0.08 1.21 8.07 -51.93 -0.42 0.79 16 34 H 0.07 0.84 6.01 -51.93 -0.31 0.52 16 35 H 0.03 0.73 7.13 -51.93 -0.37 0.36 16 36 H 0.04 0.94 6.85 -51.93 -0.36 0.58 16 37 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 LS Contribution 317.57 15.07 4.79 4.79 Total: -1.00 -36.20 317.57 -4.30 -40.50 By element: Atomic # 1 Polarization: 8.54 SS G_CDS: -4.36 Total: 4.19 kcal Atomic # 6 Polarization: 7.02 SS G_CDS: -0.29 Total: 6.73 kcal Atomic # 7 Polarization: -49.28 SS G_CDS: -0.03 Total: -49.31 kcal Atomic # 8 Polarization: -23.63 SS G_CDS: 0.25 Total: -23.38 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -4.67 Total: 16.48 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -36.20 -4.30 -40.50 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126719672.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.288 kcal (2) G-P(sol) polarization free energy of solvation -36.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.500 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds