Wall clock time and date at job start Tue Mar 31 2020 02:03:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 N 1.46500 * 109.47473 * 239.99757 * 2 1 3 5 5 C 1.34780 * 119.99910 * 85.00011 * 4 2 1 6 6 O 1.21614 * 119.99756 * 0.02562 * 5 4 2 7 7 C 1.47371 * 120.00089 * 180.02562 * 5 4 2 8 8 C 1.47026 * 127.19548 * 180.02562 * 7 5 4 9 9 C 1.34168 * 105.95488 * 179.97438 * 8 7 5 10 10 O 1.34216 * 109.12894 * 359.97438 * 9 8 7 11 11 C 1.33650 * 110.90354 * 359.76680 * 10 9 8 12 12 C 1.50708 * 109.47141 * 119.99670 * 2 1 3 13 13 O 1.21282 * 119.99544 * 119.99884 * 12 2 1 14 14 N 1.34774 * 120.00011 * 300.00244 * 12 2 1 15 15 C 1.46502 * 120.00006 * 359.97438 * 14 12 2 16 16 C 1.46500 * 119.99881 * 179.97438 * 14 12 2 17 17 C 1.50700 * 109.47003 * 90.00049 * 16 14 12 18 18 H 1.08004 * 120.00201 * 359.97438 * 17 16 14 19 19 C 1.37874 * 119.99836 * 180.02562 * 17 16 14 20 20 N 1.31519 * 119.99875 * 180.02562 * 19 17 16 21 21 Si 1.86798 * 120.00256 * 359.97438 * 19 17 16 22 22 H 1.48498 * 109.47291 * 90.00054 * 21 19 17 23 23 H 1.48500 * 109.47218 * 210.00259 * 21 19 17 24 24 H 1.48501 * 109.46782 * 330.00133 * 21 19 17 25 25 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 27 27 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 28 28 H 0.96994 * 119.99975 * 265.00388 * 4 2 1 29 29 H 1.08002 * 127.01837 * 359.97438 * 8 7 5 30 30 H 1.08004 * 125.43884 * 180.02562 * 9 8 7 31 31 H 1.08006 * 125.79776 * 180.26764 * 11 10 9 32 32 H 1.09005 * 109.46966 * 89.99945 * 15 14 12 33 33 H 1.09001 * 109.47307 * 210.00012 * 15 14 12 34 34 H 1.09000 * 109.47042 * 329.99997 * 15 14 12 35 35 H 1.08998 * 109.47195 * 209.99758 * 16 14 12 36 36 H 1.09004 * 109.46838 * 330.00163 * 16 14 12 37 37 H 0.97004 * 119.99890 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1961 5 6 2.1471 -0.0183 -2.3571 6 8 1.8583 1.1618 -2.4116 7 6 2.6379 -0.7131 -3.5605 8 6 2.8384 -0.1387 -4.8989 9 6 3.2951 -1.1405 -5.6657 10 8 3.3888 -2.2548 -4.9235 11 6 3.0074 -2.0223 -3.6638 12 6 2.0323 -0.7104 1.2306 13 8 2.7296 -1.6965 1.1192 14 7 1.7067 -0.2499 2.4546 15 6 0.8649 0.9416 2.5890 16 6 2.1946 -0.9408 3.6508 17 6 3.5223 -0.3578 4.0612 18 1 3.9592 0.4467 3.4881 19 6 4.1797 -0.8520 5.1677 20 7 5.3382 -0.3429 5.5262 21 14 3.4245 -2.2438 6.1587 22 1 3.8836 -3.5461 5.6126 23 1 3.8453 -2.1261 7.5779 24 1 1.9440 -2.1655 6.0732 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 0.5139 0.8900 28 1 2.2490 -1.6317 -1.1525 29 1 2.6555 0.8815 -5.2028 30 1 3.5478 -1.0626 -6.7129 31 1 2.9919 -2.7481 -2.8642 32 1 -0.1833 0.6440 2.6221 33 1 1.1227 1.4668 3.5086 34 1 1.0288 1.6003 1.7362 35 1 1.4766 -0.8152 4.4612 36 1 2.3154 -2.0021 3.4335 37 1 5.8009 -0.6908 6.3045 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000126719672.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:03:28 Heat of formation + Delta-G solvation = -70.580312 kcal Electronic energy + Delta-G solvation = -21618.243731 eV Core-core repulsion = 18168.994313 eV Total energy + Delta-G solvation = -3449.249418 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -43.49215 -41.46447 -40.06804 -36.84033 -36.16609 -34.74934 -33.96710 -32.30535 -30.66719 -29.80365 -27.73998 -25.92979 -24.93252 -23.28537 -22.39763 -21.21415 -20.53386 -19.42026 -19.15207 -17.93807 -17.65049 -17.13695 -16.96861 -16.54747 -16.53460 -16.02239 -15.68489 -15.38042 -14.79007 -14.69147 -14.42277 -14.24985 -13.84920 -13.70818 -13.54071 -13.46519 -13.32784 -12.95362 -12.71900 -12.57516 -12.33862 -12.01658 -11.75320 -11.28356 -10.89466 -10.83771 -10.78563 -10.30432 -9.76036 -9.47562 -8.34223 -6.40677 0.30579 1.12426 1.34623 1.38467 1.47178 1.58863 1.73889 2.05937 2.26190 2.31500 2.39983 3.00259 3.39305 3.60599 3.76414 3.96455 4.05489 4.12515 4.31990 4.52382 4.58294 4.65514 4.74316 4.77600 4.81683 4.89746 4.93861 4.98687 5.18369 5.22838 5.33676 5.43711 5.52624 5.97082 6.20419 6.38832 6.53864 6.61587 7.04950 7.13615 7.27555 8.82903 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.024921 B = 0.003867 C = 0.003598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1123.298145 B = 7239.681178 C = 7780.590678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.134 3.866 3 H 0.104 0.896 4 N -0.704 5.704 5 C 0.590 3.410 6 O -0.576 6.576 7 C -0.269 4.269 8 C -0.194 4.194 9 C -0.022 4.022 10 O -0.176 6.176 11 C 0.041 3.959 12 C 0.499 3.501 13 O -0.581 6.581 14 N -0.596 5.596 15 C 0.068 3.932 16 C 0.224 3.776 17 C -0.541 4.541 18 H 0.024 0.976 19 C 0.009 3.991 20 N -0.947 5.947 21 Si 0.952 3.048 22 H -0.274 1.274 23 H -0.278 1.278 24 H -0.233 1.233 25 H 0.069 0.931 26 H 0.073 0.927 27 H 0.103 0.897 28 H 0.412 0.588 29 H 0.160 0.840 30 H 0.251 0.749 31 H 0.237 0.763 32 H 0.095 0.905 33 H 0.071 0.929 34 H 0.083 0.917 35 H 0.057 0.943 36 H 0.026 0.974 37 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.058 -2.903 -18.384 22.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.026 3.974 3 H 0.121 0.879 4 N -0.356 5.356 5 C 0.379 3.621 6 O -0.457 6.457 7 C -0.274 4.274 8 C -0.213 4.213 9 C -0.087 4.087 10 O -0.070 6.070 11 C -0.030 4.030 12 C 0.287 3.713 13 O -0.461 6.461 14 N -0.327 5.327 15 C -0.074 4.074 16 C 0.102 3.898 17 C -0.579 4.579 18 H 0.043 0.957 19 C -0.189 4.189 20 N -0.587 5.587 21 Si 0.774 3.226 22 H -0.200 1.200 23 H -0.203 1.203 24 H -0.156 1.156 25 H 0.088 0.912 26 H 0.092 0.908 27 H 0.121 0.879 28 H 0.250 0.750 29 H 0.177 0.823 30 H 0.267 0.733 31 H 0.253 0.747 32 H 0.113 0.887 33 H 0.089 0.911 34 H 0.101 0.899 35 H 0.075 0.925 36 H 0.044 0.956 37 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -11.693 -2.837 -18.420 22.002 hybrid contribution 0.652 -0.320 0.910 1.164 sum -11.041 -3.157 -17.511 20.940 Atomic orbital electron populations 1.22326 0.90182 1.04041 1.05102 1.20738 0.97603 0.96879 0.82216 0.87853 1.45596 1.67049 1.14872 1.08115 1.17578 0.76362 0.85707 0.82409 1.90737 1.52554 1.16805 1.85641 1.21500 1.14289 0.95964 0.95604 1.22959 1.05622 1.01825 0.90917 1.24689 1.03112 0.81992 0.98922 1.83847 1.66230 1.37252 1.19696 1.24968 0.95733 0.96390 0.85869 1.20936 0.80106 0.84777 0.85517 1.90617 1.39706 1.29001 1.86794 1.47817 1.49919 1.29436 1.05494 1.22256 0.94929 0.86334 1.03893 1.19419 0.93641 0.93002 0.83772 1.21574 1.05265 1.19355 1.11755 0.95726 1.25912 0.94997 0.99553 0.98404 1.70068 1.16750 1.44335 1.27551 0.85655 0.80855 0.78540 0.77521 1.19988 1.20308 1.15612 0.91196 0.90805 0.87895 0.75012 0.82278 0.73279 0.74703 0.88735 0.91057 0.89880 0.92491 0.95579 0.92255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.53 9.12 71.98 0.66 -2.87 16 2 C 0.13 4.05 2.18 44.25 0.10 4.15 16 3 H 0.10 3.34 6.83 -2.39 -0.02 3.32 16 4 N -0.70 -20.29 4.94 -449.41 -2.22 -22.51 16 5 C 0.59 17.83 7.78 86.65 0.67 18.50 16 6 O -0.58 -20.93 16.65 -4.08 -0.07 -21.00 16 7 C -0.27 -6.58 6.31 -18.99 -0.12 -6.70 16 8 C -0.19 -3.99 11.01 23.65 0.26 -3.73 16 9 C -0.02 -0.31 12.03 66.89 0.80 0.49 16 10 O -0.18 -3.01 10.52 4.47 0.05 -2.96 16 11 C 0.04 0.76 11.61 67.39 0.78 1.54 16 12 C 0.50 19.35 7.14 87.66 0.63 19.98 16 13 O -0.58 -26.81 15.42 -3.04 -0.05 -26.86 16 14 N -0.60 -23.07 2.86 -851.10 -2.43 -25.50 16 15 C 0.07 1.84 8.80 127.77 1.12 2.97 16 16 C 0.22 10.42 4.23 85.63 0.36 10.78 16 17 C -0.54 -31.43 9.94 25.60 0.25 -31.17 16 18 H 0.02 1.62 8.06 -2.91 -0.02 1.60 16 19 C 0.01 0.54 5.47 84.65 0.46 1.00 16 20 N -0.95 -59.73 13.96 21.45 0.30 -59.44 16 21 Si 0.95 43.26 27.47 68.60 1.88 45.14 16 22 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16 23 H -0.28 -12.23 7.11 99.48 0.71 -11.53 16 24 H -0.23 -9.30 6.54 99.48 0.65 -8.65 16 25 H 0.07 1.46 8.14 -2.39 -0.02 1.45 16 26 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 27 H 0.10 1.88 4.53 -2.38 -0.01 1.87 16 28 H 0.41 10.87 6.76 -92.71 -0.63 10.25 16 29 H 0.16 3.14 8.06 -2.91 -0.02 3.11 16 30 H 0.25 1.09 8.06 -2.91 -0.02 1.07 16 31 H 0.24 2.97 7.47 -2.91 -0.02 2.95 16 32 H 0.09 1.84 6.95 -2.38 -0.02 1.82 16 33 H 0.07 2.08 8.07 -2.39 -0.02 2.06 16 34 H 0.08 1.98 6.01 -2.39 -0.01 1.96 16 35 H 0.06 2.39 7.13 -2.39 -0.02 2.37 16 36 H 0.03 1.28 6.85 -2.38 -0.02 1.27 16 37 H 0.27 15.71 8.31 -92.71 -0.77 14.94 16 Total: -1.00 -82.35 317.57 3.87 -78.48 By element: Atomic # 1 Polarization: 19.28 SS G_CDS: 0.43 Total: 19.71 kcal Atomic # 6 Polarization: 8.96 SS G_CDS: 5.98 Total: 14.94 kcal Atomic # 7 Polarization: -103.09 SS G_CDS: -4.35 Total: -107.45 kcal Atomic # 8 Polarization: -50.75 SS G_CDS: -0.07 Total: -50.82 kcal Atomic # 14 Polarization: 43.26 SS G_CDS: 1.88 Total: 45.14 kcal Total: -82.35 3.87 -78.48 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126719672.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.895 kcal (2) G-P(sol) polarization free energy of solvation -82.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.475 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds