Wall clock time and date at job start Tue Mar 31 2020 02:08:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46500 * 109.47337 * 2 1 4 4 C 1.36937 * 119.99739 * 270.38693 * 3 2 1 5 5 H 1.08002 * 119.99897 * 325.85753 * 4 3 2 6 6 C 1.38809 * 120.00039 * 145.86425 * 4 3 2 7 7 N 1.31624 * 119.99959 * 337.15127 * 6 4 3 8 8 Si 1.86796 * 120.00424 * 157.15504 * 6 4 3 9 9 H 1.48508 * 109.47097 * 359.97438 * 8 6 4 10 10 H 1.48503 * 109.47303 * 119.99473 * 8 6 4 11 11 H 1.48497 * 109.47363 * 239.99752 * 8 6 4 12 12 C 1.46500 * 120.00111 * 90.38618 * 3 2 1 13 13 C 1.52997 * 109.47219 * 90.00069 * 12 3 2 14 14 H 1.09005 * 109.46875 * 304.99808 * 13 12 3 15 15 O 1.42900 * 109.47289 * 64.99801 * 13 12 3 16 16 C 1.50699 * 109.47262 * 185.00161 * 13 12 3 17 17 C 1.38261 * 119.99842 * 280.23847 * 16 13 12 18 18 C 1.38216 * 119.99902 * 180.27424 * 17 16 13 19 19 C 1.38254 * 120.00014 * 359.74101 * 18 17 16 20 20 C 1.38214 * 119.99869 * 0.02562 * 19 18 17 21 21 N 1.48022 * 119.99990 * 179.97438 * 20 19 18 22 22 O 1.21800 * 120.00021 * 180.02562 * 21 20 19 23 23 O 1.21800 * 119.99735 * 0.02562 * 21 20 19 24 24 C 1.38213 * 120.00372 * 99.99559 * 16 13 12 25 25 H 1.09004 * 109.46638 * 59.99791 * 1 2 3 26 26 H 1.08998 * 109.47094 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.46981 * 300.00458 * 1 2 3 28 28 H 1.08997 * 109.46981 * 239.99541 * 2 1 3 29 29 H 1.09004 * 109.46815 * 119.99684 * 2 1 3 30 30 H 0.97000 * 120.00388 * 180.02562 * 7 6 4 31 31 H 1.08998 * 109.47032 * 329.99774 * 12 3 2 32 32 H 1.09005 * 109.47130 * 210.00250 * 12 3 2 33 33 H 0.96703 * 113.99858 * 59.99801 * 15 13 12 34 34 H 1.08003 * 120.00211 * 359.97438 * 17 16 13 35 35 H 1.08000 * 119.99695 * 179.72122 * 18 17 16 36 36 H 1.07999 * 119.99951 * 179.97438 * 19 18 17 37 37 H 1.07998 * 119.99876 * 0.02562 * 24 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2391 2.0293 -1.1859 5 1 2.5951 1.4787 -2.0441 6 6 2.0054 3.3940 -1.2850 7 7 1.1791 3.9828 -0.4465 8 14 2.8634 4.3950 -2.6083 9 1 3.7348 3.5041 -3.4160 10 1 1.8474 5.0254 -3.4890 11 1 3.6906 5.4513 -1.9718 12 6 2.2707 2.0690 1.2687 13 6 3.7184 1.8276 1.7006 14 1 3.9114 0.7555 1.7415 15 8 4.6043 2.4354 0.7584 16 6 3.9434 2.4308 3.0632 17 6 4.1637 3.7898 3.1897 18 6 4.3757 4.3422 4.4388 19 6 4.3620 3.5366 5.5623 20 6 4.1370 2.1788 5.4363 21 7 4.1229 1.3161 6.6390 22 8 3.9250 0.1194 6.5279 23 8 4.3092 1.8030 7.7398 24 6 3.9244 1.6263 4.1869 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8899 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 1.0155 4.9364 -0.5159 31 1 1.5947 1.6832 2.0318 32 1 2.1029 3.1385 1.1418 33 1 4.4886 3.3914 0.6698 34 1 4.1750 4.4191 2.3120 35 1 4.5523 5.4031 4.5371 36 1 4.5281 3.9682 6.5383 37 1 3.7488 0.5652 4.0884 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000153882797.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:08:34 Heat of formation + Delta-G solvation = -8.925315 kcal Electronic energy + Delta-G solvation = -22112.376770 eV Core-core repulsion = 18665.800914 eV Total energy + Delta-G solvation = -3446.575856 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.14216 -39.76086 -37.10576 -36.53218 -35.13294 -32.01447 -31.90882 -31.81306 -29.42287 -27.33731 -26.52355 -24.32332 -23.12105 -22.69930 -21.33025 -20.12065 -18.88740 -18.62314 -17.50170 -17.17320 -16.64558 -15.82977 -15.62234 -14.88307 -14.46107 -14.20938 -13.99128 -13.72735 -13.30865 -13.14648 -12.45296 -12.27505 -12.14984 -11.90697 -11.54013 -11.32018 -11.22315 -11.13733 -11.12684 -10.86132 -10.79239 -10.42115 -10.22315 -10.15925 -9.85953 -9.62514 -9.57525 -9.07442 -8.63100 -6.73492 -5.90632 -3.41815 -0.12234 0.93328 1.40367 1.43703 3.24164 3.29417 3.37113 3.42417 4.29857 4.39881 4.44891 4.76633 4.83707 4.92561 5.07361 5.13063 5.23241 5.42455 5.61405 5.68124 5.81181 5.95393 6.00809 6.07000 6.16347 6.27356 6.38805 6.43035 6.51882 6.56500 6.66180 6.88255 7.14692 7.39421 7.67199 7.72567 8.18706 8.36988 9.04378 9.67786 10.23405 11.10069 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.020720 B = 0.005134 C = 0.004428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1351.026640 B = 5452.127561 C = 6322.140582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.139 3.861 3 N -0.575 5.575 4 C -0.233 4.233 5 H 0.062 0.938 6 C 0.003 3.997 7 N -0.895 5.895 8 Si 0.894 3.106 9 H -0.276 1.276 10 H -0.292 1.292 11 H -0.288 1.288 12 C 0.118 3.882 13 C 0.122 3.878 14 H 0.096 0.904 15 O -0.536 6.536 16 C -0.092 4.092 17 C -0.058 4.058 18 C -0.114 4.114 19 C -0.070 4.070 20 C -0.045 4.045 21 N 0.032 4.968 22 O -0.164 6.164 23 O -0.170 6.170 24 C -0.052 4.052 25 H 0.055 0.945 26 H 0.032 0.968 27 H 0.042 0.958 28 H 0.045 0.955 29 H 0.033 0.967 30 H 0.253 0.747 31 H 0.033 0.967 32 H 0.109 0.891 33 H 0.367 0.633 34 H 0.142 0.858 35 H 0.145 0.855 36 H 0.148 0.852 37 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.065 0.379 8.655 10.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.013 3.987 3 N -0.294 5.294 4 C -0.363 4.363 5 H 0.080 0.920 6 C -0.195 4.195 7 N -0.539 5.539 8 Si 0.724 3.276 9 H -0.200 1.200 10 H -0.219 1.219 11 H -0.215 1.215 12 C -0.010 4.010 13 C 0.059 3.941 14 H 0.114 0.886 15 O -0.340 6.340 16 C -0.095 4.095 17 C -0.077 4.077 18 C -0.132 4.132 19 C -0.089 4.089 20 C -0.127 4.127 21 N 0.550 4.450 22 O -0.380 6.380 23 O -0.384 6.384 24 C -0.072 4.072 25 H 0.074 0.926 26 H 0.051 0.949 27 H 0.061 0.939 28 H 0.063 0.937 29 H 0.051 0.949 30 H 0.063 0.937 31 H 0.051 0.949 32 H 0.126 0.874 33 H 0.214 0.786 34 H 0.160 0.840 35 H 0.163 0.837 36 H 0.166 0.834 37 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 5.207 0.307 7.975 9.529 hybrid contribution 0.074 0.986 -0.120 0.996 sum 5.281 1.293 7.855 9.554 Atomic orbital electron populations 1.22262 0.99470 0.98557 1.01907 1.20924 0.92113 0.87266 0.98403 1.43754 1.73570 1.10026 1.02029 1.19089 1.36067 0.91149 0.89977 0.91991 1.25006 0.97729 0.98504 0.98263 1.69992 1.33958 1.10298 1.39663 0.86351 0.79400 0.80094 0.81745 1.20048 1.21933 1.21481 1.21663 0.89114 1.03108 0.87066 1.21923 0.94935 0.96354 0.80859 0.88649 1.86595 1.59546 1.25584 1.62265 1.21161 0.97006 0.93912 0.97383 1.21495 0.92950 0.94836 0.98383 1.21169 1.00375 1.00511 0.91158 1.20963 0.96346 0.90357 1.01225 1.21093 1.15179 0.91381 0.85095 1.43680 0.97236 1.01488 1.02577 1.94537 1.52233 0.98035 1.93168 1.94503 1.52878 1.77927 1.13139 1.20903 0.95079 1.02039 0.89141 0.92596 0.94899 0.93899 0.93681 0.94866 0.93686 0.94893 0.87372 0.78622 0.84001 0.83705 0.83383 0.83170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.09 10.24 37.16 0.38 -2.71 16 2 C 0.14 2.76 6.39 -4.04 -0.03 2.73 16 3 N -0.58 -13.01 2.43 -173.24 -0.42 -13.43 16 4 C -0.23 -5.85 8.99 -15.06 -0.14 -5.99 16 5 H 0.06 1.61 7.93 -52.49 -0.42 1.20 16 6 C 0.00 0.08 4.95 -17.43 -0.09 0.00 16 7 N -0.89 -23.27 11.32 55.49 0.63 -22.64 16 8 Si 0.89 20.01 29.61 -169.99 -5.03 14.97 16 9 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 10 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 11 H -0.29 -6.29 7.11 56.52 0.40 -5.89 16 12 C 0.12 2.42 4.95 -4.04 -0.02 2.40 16 13 C 0.12 2.10 3.45 -27.88 -0.10 2.00 16 14 H 0.10 1.65 8.00 -51.93 -0.42 1.23 16 15 O -0.54 -9.95 12.67 -35.23 -0.45 -10.40 16 16 C -0.09 -1.34 4.97 -104.62 -0.52 -1.86 16 17 C -0.06 -0.74 9.32 -39.58 -0.37 -1.11 16 18 C -0.11 -1.21 10.05 -39.58 -0.40 -1.60 16 19 C -0.07 -0.81 9.56 -39.58 -0.38 -1.19 16 20 C -0.04 -0.62 6.85 -79.95 -0.55 -1.17 16 21 N 0.03 0.49 4.45 33.96 0.15 0.64 16 22 O -0.16 -2.64 18.45 -29.46 -0.54 -3.18 16 23 O -0.17 -2.61 18.45 -29.46 -0.54 -3.15 16 24 C -0.05 -0.73 9.18 -39.59 -0.36 -1.10 16 25 H 0.05 1.18 8.14 -51.93 -0.42 0.76 16 26 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 28 H 0.04 0.89 8.04 -51.93 -0.42 0.47 16 29 H 0.03 0.59 8.07 -51.93 -0.42 0.17 16 30 H 0.25 6.38 8.31 -40.82 -0.34 6.05 16 31 H 0.03 0.66 8.07 -51.93 -0.42 0.24 16 32 H 0.11 2.46 5.32 -51.93 -0.28 2.19 16 33 H 0.37 6.19 7.51 45.56 0.34 6.53 16 34 H 0.14 1.67 6.80 -52.48 -0.36 1.32 16 35 H 0.15 1.09 8.06 -52.49 -0.42 0.67 16 36 H 0.15 1.44 7.61 -52.49 -0.40 1.04 16 37 H 0.15 2.01 7.59 -52.49 -0.40 1.61 16 LS Contribution 323.32 15.07 4.87 4.87 Total: -1.00 -28.11 323.32 -7.90 -36.01 By element: Atomic # 1 Polarization: 9.92 SS G_CDS: -4.00 Total: 5.92 kcal Atomic # 6 Polarization: -7.04 SS G_CDS: -2.56 Total: -9.60 kcal Atomic # 7 Polarization: -35.79 SS G_CDS: 0.36 Total: -35.43 kcal Atomic # 8 Polarization: -15.20 SS G_CDS: -1.53 Total: -16.74 kcal Atomic # 14 Polarization: 20.01 SS G_CDS: -5.03 Total: 14.97 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -28.11 -7.90 -36.01 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153882797.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.085 kcal (2) G-P(sol) polarization free energy of solvation -28.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.010 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds