Wall clock time and date at job start Tue Mar 31 2020 02:08:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46500 * 109.47337 * 2 1 4 4 C 1.36937 * 119.99739 * 270.38693 * 3 2 1 5 5 H 1.08002 * 119.99897 * 325.85753 * 4 3 2 6 6 C 1.38809 * 120.00039 * 145.86425 * 4 3 2 7 7 N 1.31624 * 119.99959 * 337.15127 * 6 4 3 8 8 Si 1.86796 * 120.00424 * 157.15504 * 6 4 3 9 9 H 1.48508 * 109.47097 * 359.97438 * 8 6 4 10 10 H 1.48503 * 109.47303 * 119.99473 * 8 6 4 11 11 H 1.48497 * 109.47363 * 239.99752 * 8 6 4 12 12 C 1.46500 * 120.00111 * 90.38618 * 3 2 1 13 13 C 1.52997 * 109.47219 * 90.00069 * 12 3 2 14 14 H 1.09005 * 109.46875 * 304.99808 * 13 12 3 15 15 O 1.42900 * 109.47289 * 64.99801 * 13 12 3 16 16 C 1.50699 * 109.47262 * 185.00161 * 13 12 3 17 17 C 1.38261 * 119.99842 * 280.23847 * 16 13 12 18 18 C 1.38216 * 119.99902 * 180.27424 * 17 16 13 19 19 C 1.38254 * 120.00014 * 359.74101 * 18 17 16 20 20 C 1.38214 * 119.99869 * 0.02562 * 19 18 17 21 21 N 1.48022 * 119.99990 * 179.97438 * 20 19 18 22 22 O 1.21800 * 120.00021 * 180.02562 * 21 20 19 23 23 O 1.21800 * 119.99735 * 0.02562 * 21 20 19 24 24 C 1.38213 * 120.00372 * 99.99559 * 16 13 12 25 25 H 1.09004 * 109.46638 * 59.99791 * 1 2 3 26 26 H 1.08998 * 109.47094 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.46981 * 300.00458 * 1 2 3 28 28 H 1.08997 * 109.46981 * 239.99541 * 2 1 3 29 29 H 1.09004 * 109.46815 * 119.99684 * 2 1 3 30 30 H 0.97000 * 120.00388 * 180.02562 * 7 6 4 31 31 H 1.08998 * 109.47032 * 329.99774 * 12 3 2 32 32 H 1.09005 * 109.47130 * 210.00250 * 12 3 2 33 33 H 0.96703 * 113.99858 * 59.99801 * 15 13 12 34 34 H 1.08003 * 120.00211 * 359.97438 * 17 16 13 35 35 H 1.08000 * 119.99695 * 179.72122 * 18 17 16 36 36 H 1.07999 * 119.99951 * 179.97438 * 19 18 17 37 37 H 1.07998 * 119.99876 * 0.02562 * 24 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2391 2.0293 -1.1859 5 1 2.5951 1.4787 -2.0441 6 6 2.0054 3.3940 -1.2850 7 7 1.1791 3.9828 -0.4465 8 14 2.8634 4.3950 -2.6083 9 1 3.7348 3.5041 -3.4160 10 1 1.8474 5.0254 -3.4890 11 1 3.6906 5.4513 -1.9718 12 6 2.2707 2.0690 1.2687 13 6 3.7184 1.8276 1.7006 14 1 3.9114 0.7555 1.7415 15 8 4.6043 2.4354 0.7584 16 6 3.9434 2.4308 3.0632 17 6 4.1637 3.7898 3.1897 18 6 4.3757 4.3422 4.4388 19 6 4.3620 3.5366 5.5623 20 6 4.1370 2.1788 5.4363 21 7 4.1229 1.3161 6.6390 22 8 3.9250 0.1194 6.5279 23 8 4.3092 1.8030 7.7398 24 6 3.9244 1.6263 4.1869 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8899 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 1.0155 4.9364 -0.5159 31 1 1.5947 1.6832 2.0318 32 1 2.1029 3.1385 1.1418 33 1 4.4886 3.3914 0.6698 34 1 4.1750 4.4191 2.3120 35 1 4.5523 5.4031 4.5371 36 1 4.5281 3.9682 6.5383 37 1 3.7488 0.5652 4.0884 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000153882797.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:08:33 Heat of formation + Delta-G solvation = -24.505555 kcal Electronic energy + Delta-G solvation = -22113.052380 eV Core-core repulsion = 18665.800914 eV Total energy + Delta-G solvation = -3447.251466 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -43.29319 -40.88086 -38.54989 -37.71612 -36.71338 -33.75867 -33.14959 -32.87544 -30.99504 -28.92245 -27.63936 -25.97458 -24.59137 -23.73477 -22.59941 -21.75319 -20.04068 -19.79333 -18.87140 -18.65339 -17.77594 -17.16246 -16.88100 -16.54922 -15.93865 -15.63099 -15.44824 -14.98171 -14.76226 -14.32751 -14.00088 -13.74289 -13.26400 -13.12924 -13.07223 -12.88580 -12.72910 -12.51879 -12.33787 -12.32341 -12.29612 -12.03132 -12.01054 -11.83041 -11.51418 -11.05155 -10.58595 -10.51080 -10.19876 -8.54861 -7.78211 -5.33430 -1.24076 -0.06333 0.30208 0.33535 1.46679 1.54362 1.63773 2.27102 2.56651 3.16752 3.32328 3.47184 3.57168 3.76459 3.86032 3.89595 3.99211 4.15904 4.39494 4.43879 4.57229 4.62688 4.71404 4.80644 4.85806 4.90203 5.00921 5.07361 5.09841 5.26619 5.28111 5.48878 5.52774 5.69327 5.79470 6.47163 6.49193 6.83065 7.20585 7.87495 8.39231 9.19063 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.020720 B = 0.005134 C = 0.004428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1351.026640 B = 5452.127561 C = 6322.140582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.132 3.868 3 N -0.592 5.592 4 C -0.241 4.241 5 H 0.047 0.953 6 C -0.028 4.028 7 N -0.918 5.918 8 Si 0.947 3.053 9 H -0.281 1.281 10 H -0.302 1.302 11 H -0.276 1.276 12 C 0.124 3.876 13 C 0.136 3.864 14 H 0.092 0.908 15 O -0.550 6.550 16 C -0.106 4.106 17 C -0.059 4.059 18 C -0.098 4.098 19 C -0.057 4.057 20 C -0.059 4.059 21 N 0.033 4.967 22 O -0.198 6.198 23 O -0.161 6.161 24 C -0.057 4.057 25 H 0.027 0.973 26 H 0.065 0.935 27 H 0.032 0.968 28 H 0.043 0.957 29 H 0.054 0.946 30 H 0.252 0.748 31 H 0.029 0.971 32 H 0.089 0.911 33 H 0.373 0.627 34 H 0.150 0.850 35 H 0.186 0.814 36 H 0.174 0.826 37 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.971 1.610 9.705 11.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.007 3.993 3 N -0.312 5.312 4 C -0.372 4.372 5 H 0.064 0.936 6 C -0.224 4.224 7 N -0.563 5.563 8 Si 0.776 3.224 9 H -0.206 1.206 10 H -0.230 1.230 11 H -0.201 1.201 12 C -0.004 4.004 13 C 0.074 3.926 14 H 0.109 0.891 15 O -0.355 6.355 16 C -0.108 4.108 17 C -0.077 4.077 18 C -0.116 4.116 19 C -0.076 4.076 20 C -0.142 4.142 21 N 0.548 4.452 22 O -0.406 6.406 23 O -0.379 6.379 24 C -0.076 4.076 25 H 0.047 0.953 26 H 0.084 0.916 27 H 0.051 0.949 28 H 0.062 0.938 29 H 0.073 0.927 30 H 0.061 0.939 31 H 0.048 0.952 32 H 0.106 0.894 33 H 0.221 0.779 34 H 0.168 0.832 35 H 0.204 0.796 36 H 0.191 0.809 37 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 6.116 1.474 9.026 11.003 hybrid contribution -0.200 0.640 -0.388 0.775 sum 5.916 2.115 8.638 10.682 Atomic orbital electron populations 1.22125 0.98869 1.00092 0.99936 1.21060 0.92585 0.86312 0.99344 1.43955 1.74388 1.10842 1.02022 1.19120 1.35867 0.91602 0.90604 0.93579 1.25435 0.98184 0.98964 0.99864 1.70092 1.35013 1.10267 1.40971 0.85559 0.78201 0.78949 0.79688 1.20585 1.22974 1.20138 1.21564 0.91132 1.01499 0.86159 1.21516 0.92505 0.96380 0.82201 0.89066 1.86562 1.59750 1.26224 1.62981 1.20799 0.99310 0.94887 0.95791 1.21736 0.92017 0.94037 0.99889 1.21574 0.98262 1.02250 0.89550 1.21382 0.94206 0.89228 1.02806 1.21235 1.16586 0.92116 0.84276 1.43885 0.96855 1.01516 1.02949 1.94542 1.53959 0.98728 1.93365 1.94474 1.52068 1.77762 1.13645 1.20857 0.95311 1.02117 0.89355 0.95332 0.91589 0.94906 0.93843 0.92735 0.93862 0.95219 0.89388 0.77946 0.83206 0.79639 0.80908 0.83375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.70 10.24 71.98 0.74 -4.96 16 2 C 0.13 5.23 6.39 86.38 0.55 5.78 16 3 N -0.59 -27.01 2.43 -702.00 -1.71 -28.71 16 4 C -0.24 -12.27 8.99 84.03 0.76 -11.52 16 5 H 0.05 2.45 7.93 -2.91 -0.02 2.43 16 6 C -0.03 -1.41 4.95 84.86 0.42 -0.99 16 7 N -0.92 -47.94 11.32 21.65 0.25 -47.69 16 8 Si 0.95 41.13 29.61 68.60 2.03 43.16 16 9 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 10 H -0.30 -13.55 7.11 99.48 0.71 -12.84 16 11 H -0.28 -11.31 7.11 99.48 0.71 -10.60 16 12 C 0.12 5.06 4.95 86.38 0.43 5.49 16 13 C 0.14 4.64 3.45 29.85 0.10 4.74 16 14 H 0.09 3.15 8.00 -2.38 -0.02 3.13 16 15 O -0.55 -20.16 12.67 -148.98 -1.89 -22.05 16 16 C -0.11 -2.95 4.97 -19.87 -0.10 -3.05 16 17 C -0.06 -1.34 9.32 22.27 0.21 -1.13 16 18 C -0.10 -1.69 10.05 22.27 0.22 -1.47 16 19 C -0.06 -1.13 9.56 22.27 0.21 -0.91 16 20 C -0.06 -1.53 6.85 36.37 0.25 -1.28 16 21 N 0.03 0.97 4.45 -46.46 -0.21 0.76 16 22 O -0.20 -6.35 18.45 18.89 0.35 -6.00 16 23 O -0.16 -4.63 18.45 18.89 0.35 -4.28 16 24 C -0.06 -1.55 9.18 22.27 0.20 -1.35 16 25 H 0.03 1.20 8.14 -2.38 -0.02 1.18 16 26 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 27 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 28 H 0.04 1.71 8.04 -2.39 -0.02 1.69 16 29 H 0.05 1.90 8.07 -2.39 -0.02 1.88 16 30 H 0.25 12.71 8.31 -92.71 -0.77 11.94 16 31 H 0.03 1.20 8.07 -2.39 -0.02 1.18 16 32 H 0.09 4.03 5.32 -2.38 -0.01 4.02 16 33 H 0.37 12.33 7.51 -74.06 -0.56 11.77 16 34 H 0.15 3.19 6.80 -2.91 -0.02 3.17 16 35 H 0.19 1.74 8.06 -2.91 -0.02 1.72 16 36 H 0.17 2.58 7.61 -2.91 -0.02 2.56 16 37 H 0.15 3.98 7.59 -2.91 -0.02 3.96 16 Total: -1.00 -60.35 323.32 3.70 -56.64 By element: Atomic # 1 Polarization: 18.29 SS G_CDS: 0.54 Total: 18.82 kcal Atomic # 6 Polarization: -14.64 SS G_CDS: 3.99 Total: -10.64 kcal Atomic # 7 Polarization: -73.98 SS G_CDS: -1.67 Total: -75.65 kcal Atomic # 8 Polarization: -31.14 SS G_CDS: -1.19 Total: -32.33 kcal Atomic # 14 Polarization: 41.13 SS G_CDS: 2.03 Total: 43.16 kcal Total: -60.35 3.70 -56.64 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153882797.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.139 kcal (2) G-P(sol) polarization free energy of solvation -60.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.645 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds