Wall clock time and date at job start Tue Mar 31 2020 01:59:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09003 * 109.46998 * 2 1 4 4 C 1.50704 * 109.46982 * 119.99621 * 2 1 3 5 5 H 1.07999 * 119.99533 * 120.00349 * 4 2 1 6 6 C 1.37873 * 119.99940 * 300.00006 * 4 2 1 7 7 N 1.31515 * 120.00062 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 119.99733 * 180.02562 * 6 4 2 9 9 H 1.48490 * 109.47204 * 89.99839 * 8 6 4 10 10 H 1.48504 * 109.46880 * 210.00187 * 8 6 4 11 11 H 1.48504 * 109.47102 * 329.99688 * 8 6 4 12 12 N 1.46500 * 109.47176 * 239.99780 * 2 1 3 13 13 C 1.34778 * 119.99899 * 85.00017 * 12 2 1 14 14 O 1.21276 * 120.00008 * 0.02562 * 13 12 2 15 15 C 1.50704 * 119.99701 * 180.02562 * 13 12 2 16 16 H 1.08998 * 109.47244 * 60.00401 * 15 13 12 17 17 C 1.52995 * 109.46991 * 299.99988 * 15 13 12 18 18 N 1.46502 * 109.46911 * 179.97438 * 15 13 12 19 19 C 1.34769 * 120.00003 * 204.99887 * 18 15 13 20 20 O 1.21614 * 120.00201 * 0.02562 * 19 18 15 21 21 C 1.47378 * 120.00151 * 180.02562 * 19 18 15 22 22 C 1.47020 * 127.19340 * 179.97438 * 21 19 18 23 23 C 1.34184 * 105.95357 * 179.97438 * 22 21 19 24 24 O 1.34209 * 109.12515 * 0.02562 * 23 22 21 25 25 C 1.33658 * 110.90640 * 359.97438 * 24 23 22 26 26 H 1.08998 * 109.47044 * 180.02562 * 1 2 3 27 27 H 1.08995 * 109.46746 * 300.00543 * 1 2 3 28 28 H 1.09001 * 109.46940 * 59.99863 * 1 2 3 29 29 H 0.97001 * 119.99735 * 180.02562 * 7 6 4 30 30 H 0.96998 * 120.00209 * 265.00224 * 12 2 1 31 31 H 1.09009 * 109.46751 * 180.02562 * 17 15 13 32 32 H 1.09004 * 109.47167 * 299.99954 * 17 15 13 33 33 H 1.08996 * 109.47193 * 60.00170 * 17 15 13 34 34 H 0.97000 * 119.99846 * 25.00549 * 18 15 13 35 35 H 1.07999 * 127.02375 * 0.22997 * 22 21 19 36 36 H 1.07998 * 125.43737 * 180.02562 * 23 22 21 37 37 H 1.08002 * 125.79551 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 1.2305 5 1 2.6533 -1.5884 1.1314 6 6 1.6993 -0.2392 2.4827 7 7 0.9428 0.8298 2.6033 8 14 2.3225 -1.1193 4.0080 9 1 3.6304 -0.5439 4.4118 10 1 1.3444 -0.9487 5.1123 11 1 2.4880 -2.5652 3.7123 12 7 2.0184 -0.6907 -1.1961 13 6 2.1471 -0.0183 -2.3571 14 8 1.8591 1.1585 -2.4115 15 6 2.6489 -0.7290 -3.5877 16 1 1.9760 -1.5507 -3.8326 17 6 4.0513 -1.2800 -3.3222 18 7 2.6978 0.2122 -4.7093 19 6 2.6180 -0.2433 -5.9752 20 8 2.5051 -1.4356 -6.1864 21 6 2.6677 0.7035 -7.1036 22 6 2.5954 0.3829 -8.5366 23 6 2.6794 1.5564 -9.1818 24 8 2.7951 2.5455 -8.2821 25 6 2.7902 2.0604 -7.0366 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 0.7087 1.1614 3.4843 30 1 2.2491 -1.6318 -1.1526 31 1 4.4144 -1.7936 -4.2124 32 1 4.7243 -0.4581 -3.0774 33 1 4.0145 -1.9803 -2.4878 34 1 2.7876 1.1633 -4.5408 35 1 2.4913 -0.5967 -8.9794 36 1 2.6575 1.6845 -10.2539 37 1 2.8696 2.6438 -6.1312 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000194710462.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:59:38 Heat of formation + Delta-G solvation = -64.029653 kcal Electronic energy + Delta-G solvation = -21332.640578 eV Core-core repulsion = 17883.675218 eV Total energy + Delta-G solvation = -3448.965360 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.73624 -39.96908 -38.61092 -35.21644 -34.56282 -33.16159 -32.54203 -31.10454 -29.64987 -28.51646 -25.32753 -24.87496 -23.30703 -21.68608 -21.02836 -20.10360 -19.56770 -18.80702 -17.23641 -16.46874 -16.34373 -15.98425 -15.46488 -15.24706 -14.91936 -14.79500 -14.34182 -13.89235 -13.42922 -13.27217 -13.11941 -12.63617 -12.58663 -12.30375 -12.19115 -11.81513 -11.45472 -11.13657 -11.01325 -10.80540 -10.35955 -10.28339 -10.09708 -10.02440 -9.37506 -9.11888 -9.07072 -8.94240 -8.60587 -8.03505 -6.17246 -4.26885 1.16901 1.86707 2.69373 3.00847 3.16698 3.21979 3.28907 3.30508 3.32047 3.99474 4.32628 4.39506 4.48567 4.87130 5.13775 5.15613 5.19587 5.31469 5.33819 5.44133 5.68958 5.69859 5.87019 6.05236 6.19441 6.37071 6.71375 6.76494 6.89973 7.08232 7.33362 7.46217 7.51113 7.62963 7.83916 8.08603 8.17291 8.53709 8.69195 8.96116 9.40599 10.88708 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.039434 B = 0.003216 C = 0.003095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 709.876297 B = 8705.518538 C = 9045.153644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.265 3.735 3 H 0.050 0.950 4 C -0.535 4.535 5 H 0.062 0.938 6 C 0.067 3.933 7 N -0.883 5.883 8 Si 0.902 3.098 9 H -0.279 1.279 10 H -0.285 1.285 11 H -0.273 1.273 12 N -0.700 5.700 13 C 0.500 3.500 14 O -0.554 6.554 15 C 0.123 3.877 16 H 0.111 0.889 17 C -0.157 4.157 18 N -0.705 5.705 19 C 0.589 3.411 20 O -0.541 6.541 21 C -0.234 4.234 22 C -0.165 4.165 23 C -0.044 4.044 24 O -0.175 6.175 25 C 0.026 3.974 26 H 0.027 0.973 27 H 0.091 0.909 28 H 0.014 0.986 29 H 0.265 0.735 30 H 0.391 0.609 31 H 0.068 0.932 32 H 0.063 0.937 33 H 0.075 0.925 34 H 0.407 0.593 35 H 0.159 0.841 36 H 0.208 0.792 37 H 0.214 0.786 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.693 0.149 -18.301 18.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.163 3.837 3 H 0.068 0.932 4 C -0.573 4.573 5 H 0.080 0.920 6 C -0.137 4.137 7 N -0.521 5.521 8 Si 0.730 3.270 9 H -0.205 1.205 10 H -0.211 1.211 11 H -0.198 1.198 12 N -0.347 5.347 13 C 0.283 3.717 14 O -0.434 6.434 15 C 0.014 3.986 16 H 0.128 0.872 17 C -0.216 4.216 18 N -0.358 5.358 19 C 0.377 3.623 20 O -0.419 6.419 21 C -0.238 4.238 22 C -0.184 4.184 23 C -0.110 4.110 24 O -0.070 6.070 25 C -0.045 4.045 26 H 0.047 0.953 27 H 0.110 0.890 28 H 0.033 0.967 29 H 0.075 0.925 30 H 0.224 0.776 31 H 0.087 0.913 32 H 0.082 0.918 33 H 0.094 0.906 34 H 0.244 0.756 35 H 0.177 0.823 36 H 0.225 0.775 37 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges 4.321 0.555 -18.360 18.869 hybrid contribution 0.359 -0.667 1.043 1.289 sum 4.680 -0.112 -17.316 17.938 Atomic orbital electron populations 1.22090 0.98344 0.99274 1.00970 1.18795 0.91105 0.93988 0.79793 0.93241 1.21205 1.32580 1.13325 0.90240 0.91963 1.24887 0.94738 0.94958 0.99097 1.69900 1.35724 1.22469 1.23967 0.86432 0.78600 0.79870 0.82114 1.20542 1.21051 1.19793 1.46498 1.64263 1.13730 1.10204 1.20325 0.78892 0.87609 0.84862 1.90637 1.51846 1.15991 1.84910 1.20872 0.99295 0.92747 0.85669 0.87165 1.22105 0.94930 1.01695 1.02830 1.45586 1.74295 1.11432 1.04438 1.17223 0.76024 0.87415 0.81663 1.90773 1.50117 1.16083 1.84951 1.21513 1.14162 0.93443 0.94730 1.22783 1.05009 0.99687 0.90932 1.23943 1.06789 0.85217 0.95058 1.83803 1.70460 1.37543 1.15156 1.24592 0.99760 0.93506 0.86634 0.95340 0.89035 0.96652 0.92520 0.77570 0.91312 0.91774 0.90577 0.75605 0.82302 0.77515 0.76950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.62 9.26 37.16 0.34 -3.28 16 2 C 0.26 6.52 2.56 -69.08 -0.18 6.34 16 3 H 0.05 1.40 7.58 -51.93 -0.39 1.01 16 4 C -0.54 -13.80 8.73 -34.44 -0.30 -14.10 16 5 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 6 C 0.07 1.75 5.30 -17.82 -0.09 1.66 16 7 N -0.88 -24.41 11.32 55.43 0.63 -23.79 16 8 Si 0.90 20.27 29.54 -169.99 -5.02 15.25 16 9 H -0.28 -6.27 7.11 56.52 0.40 -5.86 16 10 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 11 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 12 N -0.70 -13.89 4.96 -54.93 -0.27 -14.16 16 13 C 0.50 9.39 7.19 -10.98 -0.08 9.31 16 14 O -0.55 -12.14 15.50 5.56 0.09 -12.06 16 15 C 0.12 1.84 2.98 -69.08 -0.21 1.63 16 16 H 0.11 1.66 7.57 -51.93 -0.39 1.27 16 17 C -0.16 -2.02 9.38 37.15 0.35 -1.67 16 18 N -0.70 -9.86 4.94 -56.03 -0.28 -10.14 16 19 C 0.59 8.57 7.78 -12.54 -0.10 8.48 16 20 O -0.54 -9.44 16.64 5.27 0.09 -9.35 16 21 C -0.23 -2.81 6.31 -103.28 -0.65 -3.46 16 22 C -0.16 -1.70 11.01 -37.45 -0.41 -2.11 16 23 C -0.04 -0.35 12.03 29.30 0.35 0.00 16 24 O -0.17 -1.63 10.52 7.66 0.08 -1.55 16 25 C 0.03 0.24 11.61 30.07 0.35 0.59 16 26 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 27 H 0.09 2.43 6.07 -51.93 -0.32 2.12 16 28 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 30 H 0.39 6.73 7.96 -40.82 -0.32 6.41 16 31 H 0.07 0.87 8.14 -51.92 -0.42 0.44 16 32 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.08 0.90 7.56 -51.93 -0.39 0.51 16 34 H 0.41 5.26 6.76 -40.82 -0.28 4.98 16 35 H 0.16 1.51 8.06 -52.49 -0.42 1.08 16 36 H 0.21 0.79 8.06 -52.49 -0.42 0.36 16 37 H 0.21 1.43 7.47 -52.49 -0.39 1.04 16 LS Contribution 324.61 15.07 4.89 4.89 Total: -1.00 -32.49 324.61 -4.99 -37.48 By element: Atomic # 1 Polarization: 14.61 SS G_CDS: -4.57 Total: 10.04 kcal Atomic # 6 Polarization: 4.02 SS G_CDS: -0.62 Total: 3.40 kcal Atomic # 7 Polarization: -48.17 SS G_CDS: 0.08 Total: -48.09 kcal Atomic # 8 Polarization: -23.22 SS G_CDS: 0.25 Total: -22.97 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -5.02 Total: 15.25 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -32.49 -4.99 -37.48 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194710462.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.552 kcal (2) G-P(sol) polarization free energy of solvation -32.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.477 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds