Wall clock time and date at job start Tue Mar 31 2020 01:59:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09003 * 109.46998 * 2 1 4 4 C 1.50704 * 109.46982 * 119.99621 * 2 1 3 5 5 H 1.07999 * 119.99533 * 120.00349 * 4 2 1 6 6 C 1.37873 * 119.99940 * 300.00006 * 4 2 1 7 7 N 1.31515 * 120.00062 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 119.99733 * 180.02562 * 6 4 2 9 9 H 1.48490 * 109.47204 * 89.99839 * 8 6 4 10 10 H 1.48504 * 109.46880 * 210.00187 * 8 6 4 11 11 H 1.48504 * 109.47102 * 329.99688 * 8 6 4 12 12 N 1.46500 * 109.47176 * 239.99780 * 2 1 3 13 13 C 1.34778 * 119.99899 * 85.00017 * 12 2 1 14 14 O 1.21276 * 120.00008 * 0.02562 * 13 12 2 15 15 C 1.50704 * 119.99701 * 180.02562 * 13 12 2 16 16 H 1.08998 * 109.47244 * 60.00401 * 15 13 12 17 17 C 1.52995 * 109.46991 * 299.99988 * 15 13 12 18 18 N 1.46502 * 109.46911 * 179.97438 * 15 13 12 19 19 C 1.34769 * 120.00003 * 204.99887 * 18 15 13 20 20 O 1.21614 * 120.00201 * 0.02562 * 19 18 15 21 21 C 1.47378 * 120.00151 * 180.02562 * 19 18 15 22 22 C 1.47020 * 127.19340 * 179.97438 * 21 19 18 23 23 C 1.34184 * 105.95357 * 179.97438 * 22 21 19 24 24 O 1.34209 * 109.12515 * 0.02562 * 23 22 21 25 25 C 1.33658 * 110.90640 * 359.97438 * 24 23 22 26 26 H 1.08998 * 109.47044 * 180.02562 * 1 2 3 27 27 H 1.08995 * 109.46746 * 300.00543 * 1 2 3 28 28 H 1.09001 * 109.46940 * 59.99863 * 1 2 3 29 29 H 0.97001 * 119.99735 * 180.02562 * 7 6 4 30 30 H 0.96998 * 120.00209 * 265.00224 * 12 2 1 31 31 H 1.09009 * 109.46751 * 180.02562 * 17 15 13 32 32 H 1.09004 * 109.47167 * 299.99954 * 17 15 13 33 33 H 1.08996 * 109.47193 * 60.00170 * 17 15 13 34 34 H 0.97000 * 119.99846 * 25.00549 * 18 15 13 35 35 H 1.07999 * 127.02375 * 0.22997 * 22 21 19 36 36 H 1.07998 * 125.43737 * 180.02562 * 23 22 21 37 37 H 1.08002 * 125.79551 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 1.2305 5 1 2.6533 -1.5884 1.1314 6 6 1.6993 -0.2392 2.4827 7 7 0.9428 0.8298 2.6033 8 14 2.3225 -1.1193 4.0080 9 1 3.6304 -0.5439 4.4118 10 1 1.3444 -0.9487 5.1123 11 1 2.4880 -2.5652 3.7123 12 7 2.0184 -0.6907 -1.1961 13 6 2.1471 -0.0183 -2.3571 14 8 1.8591 1.1585 -2.4115 15 6 2.6489 -0.7290 -3.5877 16 1 1.9760 -1.5507 -3.8326 17 6 4.0513 -1.2800 -3.3222 18 7 2.6978 0.2122 -4.7093 19 6 2.6180 -0.2433 -5.9752 20 8 2.5051 -1.4356 -6.1864 21 6 2.6677 0.7035 -7.1036 22 6 2.5954 0.3829 -8.5366 23 6 2.6794 1.5564 -9.1818 24 8 2.7951 2.5455 -8.2821 25 6 2.7902 2.0604 -7.0366 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 0.7087 1.1614 3.4843 30 1 2.2491 -1.6318 -1.1526 31 1 4.4144 -1.7936 -4.2124 32 1 4.7243 -0.4581 -3.0774 33 1 4.0145 -1.9803 -2.4878 34 1 2.7876 1.1633 -4.5408 35 1 2.4913 -0.5967 -8.9794 36 1 2.6575 1.6845 -10.2539 37 1 2.8696 2.6438 -6.1312 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000194710462.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:59:37 Heat of formation + Delta-G solvation = -87.899173 kcal Electronic energy + Delta-G solvation = -21333.675638 eV Core-core repulsion = 17883.675218 eV Total energy + Delta-G solvation = -3450.000420 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -43.48132 -41.31901 -40.01449 -36.90138 -35.98884 -34.45474 -33.93653 -32.29323 -30.77651 -29.99610 -27.34575 -26.04324 -24.51533 -22.70233 -22.37339 -21.17906 -21.15572 -19.86561 -18.71095 -17.67472 -17.53071 -17.13847 -16.97057 -16.70211 -16.24070 -15.97382 -15.60516 -15.33051 -14.80539 -14.51136 -14.45913 -13.84177 -13.79632 -13.61025 -13.41107 -13.25088 -12.98714 -12.89796 -12.75877 -12.63878 -12.26496 -12.12964 -11.27991 -11.11453 -10.89475 -10.82181 -10.59227 -10.28884 -9.81290 -9.74637 -8.17502 -6.34509 0.31858 1.13443 1.46284 1.46760 1.57052 1.64569 1.79350 2.07986 2.26667 2.38220 2.61203 3.13561 3.57833 3.73082 3.79107 3.99977 4.09422 4.14155 4.53446 4.64272 4.73545 4.76009 4.79193 4.91148 4.99658 5.08481 5.14778 5.21887 5.34694 5.41938 5.58047 5.67031 5.87272 5.98333 6.08844 6.40610 6.72346 6.83690 7.07493 7.29155 7.44502 8.88700 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.039434 B = 0.003216 C = 0.003095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 709.876297 B = 8705.518538 C = 9045.153644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.272 3.728 3 H 0.006 0.994 4 C -0.546 4.546 5 H 0.075 0.925 6 C 0.016 3.984 7 N -0.917 5.917 8 Si 0.970 3.030 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.260 1.260 12 N -0.696 5.696 13 C 0.501 3.499 14 O -0.587 6.587 15 C 0.134 3.866 16 H 0.113 0.887 17 C -0.150 4.150 18 N -0.702 5.702 19 C 0.590 3.410 20 O -0.576 6.576 21 C -0.269 4.269 22 C -0.194 4.194 23 C -0.022 4.022 24 O -0.176 6.176 25 C 0.041 3.959 26 H 0.039 0.961 27 H 0.068 0.932 28 H 0.013 0.987 29 H 0.265 0.735 30 H 0.407 0.593 31 H 0.074 0.926 32 H 0.064 0.936 33 H 0.088 0.912 34 H 0.412 0.588 35 H 0.160 0.840 36 H 0.251 0.749 37 H 0.237 0.763 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.637 -0.402 -19.203 20.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.169 3.831 3 H 0.024 0.976 4 C -0.584 4.584 5 H 0.093 0.907 6 C -0.185 4.185 7 N -0.555 5.555 8 Si 0.795 3.205 9 H -0.203 1.203 10 H -0.211 1.211 11 H -0.184 1.184 12 N -0.344 5.344 13 C 0.287 3.713 14 O -0.468 6.468 15 C 0.025 3.975 16 H 0.131 0.869 17 C -0.208 4.208 18 N -0.355 5.355 19 C 0.380 3.620 20 O -0.457 6.457 21 C -0.273 4.273 22 C -0.213 4.213 23 C -0.088 4.088 24 O -0.071 6.071 25 C -0.030 4.030 26 H 0.058 0.942 27 H 0.086 0.914 28 H 0.032 0.968 29 H 0.074 0.926 30 H 0.242 0.758 31 H 0.093 0.907 32 H 0.083 0.917 33 H 0.107 0.893 34 H 0.250 0.750 35 H 0.177 0.823 36 H 0.267 0.733 37 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges 5.283 -0.009 -19.287 19.998 hybrid contribution 0.050 -0.421 1.241 1.311 sum 5.333 -0.430 -18.046 18.823 Atomic orbital electron populations 1.21929 0.98412 0.99504 0.99685 1.18386 0.90998 0.92173 0.81576 0.97644 1.21545 1.32572 1.13638 0.90689 0.90677 1.25765 0.94857 0.95583 1.02257 1.70042 1.36912 1.23945 1.24614 0.85366 0.77762 0.79222 0.78120 1.20316 1.21147 1.18445 1.46216 1.64441 1.14374 1.09401 1.20923 0.77767 0.87210 0.85442 1.90620 1.53005 1.17661 1.85524 1.20756 1.00494 0.92311 0.83930 0.86939 1.22076 0.93223 1.01918 1.03619 1.45585 1.74153 1.11569 1.04209 1.17561 0.74979 0.87393 0.82056 1.90742 1.51987 1.17612 1.85408 1.21501 1.16963 0.94147 0.94733 1.22961 1.07011 1.00853 0.90488 1.24687 1.03800 0.83890 0.96382 1.83849 1.70074 1.37929 1.15220 1.24974 0.97666 0.92798 0.87515 0.94184 0.91361 0.96839 0.92555 0.75769 0.90717 0.91665 0.89277 0.74989 0.82276 0.73334 0.74707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.76 9.26 71.98 0.67 -6.10 16 2 C 0.27 13.55 2.56 44.25 0.11 13.66 16 3 H 0.01 0.33 7.58 -2.39 -0.02 0.31 16 4 C -0.55 -27.94 8.73 25.60 0.22 -27.72 16 5 H 0.08 3.57 7.74 -2.91 -0.02 3.54 16 6 C 0.02 0.82 5.30 84.65 0.45 1.26 16 7 N -0.92 -51.41 11.32 21.45 0.24 -51.17 16 8 Si 0.97 41.06 29.54 68.60 2.03 43.08 16 9 H -0.28 -11.58 7.11 99.48 0.71 -10.87 16 10 H -0.29 -12.04 7.11 99.48 0.71 -11.34 16 11 H -0.26 -10.41 7.11 99.48 0.71 -9.70 16 12 N -0.70 -27.35 4.96 -446.08 -2.21 -29.57 16 13 C 0.50 18.74 7.19 87.66 0.63 19.37 16 14 O -0.59 -26.01 15.50 -3.02 -0.05 -26.06 16 15 C 0.13 3.90 2.98 44.24 0.13 4.03 16 16 H 0.11 3.30 7.57 -2.39 -0.02 3.29 16 17 C -0.15 -3.64 9.38 71.98 0.68 -2.96 16 18 N -0.70 -19.31 4.94 -449.42 -2.22 -21.53 16 19 C 0.59 17.03 7.78 86.65 0.67 17.71 16 20 O -0.58 -20.17 16.64 -4.07 -0.07 -20.24 16 21 C -0.27 -6.26 6.31 -18.99 -0.12 -6.38 16 22 C -0.19 -3.78 11.01 23.65 0.26 -3.52 16 23 C -0.02 -0.30 12.03 66.89 0.80 0.51 16 24 O -0.18 -2.86 10.52 4.48 0.05 -2.81 16 25 C 0.04 0.72 11.61 67.39 0.78 1.50 16 26 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 27 H 0.07 3.71 6.07 -2.39 -0.01 3.70 16 28 H 0.01 0.62 8.14 -2.39 -0.02 0.60 16 29 H 0.27 14.11 8.31 -92.71 -0.77 13.34 16 30 H 0.41 13.46 7.96 -92.71 -0.74 12.72 16 31 H 0.07 1.77 8.14 -2.38 -0.02 1.75 16 32 H 0.06 1.57 8.14 -2.38 -0.02 1.55 16 33 H 0.09 1.92 7.56 -2.39 -0.02 1.90 16 34 H 0.41 10.43 6.76 -92.71 -0.63 9.81 16 35 H 0.16 2.97 8.06 -2.91 -0.02 2.95 16 36 H 0.25 0.89 8.06 -2.91 -0.02 0.86 16 37 H 0.24 2.74 7.47 -2.91 -0.02 2.72 16 Total: -1.00 -70.80 324.61 2.81 -67.99 By element: Atomic # 1 Polarization: 29.19 SS G_CDS: -0.25 Total: 28.94 kcal Atomic # 6 Polarization: 6.08 SS G_CDS: 5.29 Total: 11.37 kcal Atomic # 7 Polarization: -98.07 SS G_CDS: -4.19 Total: -102.27 kcal Atomic # 8 Polarization: -49.04 SS G_CDS: -0.07 Total: -49.11 kcal Atomic # 14 Polarization: 41.06 SS G_CDS: 2.03 Total: 43.08 kcal Total: -70.80 2.81 -67.99 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194710462.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.908 kcal (2) G-P(sol) polarization free energy of solvation -70.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.992 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds