Wall clock time and date at job start Tue Mar 31 2020 01:59:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.50697 * 109.47466 * 120.00144 * 2 1 3 5 5 H 1.07998 * 120.00039 * 119.99581 * 4 2 1 6 6 C 1.37880 * 119.99815 * 300.00179 * 4 2 1 7 7 N 1.31508 * 119.99915 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99777 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.47152 * 359.97438 * 8 6 4 10 10 H 1.48494 * 109.47204 * 119.99883 * 8 6 4 11 11 H 1.48496 * 109.47191 * 240.00215 * 8 6 4 12 12 N 1.46506 * 109.47289 * 240.00326 * 2 1 3 13 13 C 1.34777 * 120.00033 * 84.99600 * 12 2 1 14 14 O 1.21287 * 119.99681 * 0.02562 * 13 12 2 15 15 C 1.50696 * 120.00198 * 180.02562 * 13 12 2 16 16 H 1.09001 * 109.46822 * 60.00123 * 15 13 12 17 17 C 1.52998 * 109.47151 * 300.00325 * 15 13 12 18 18 N 1.46496 * 109.47214 * 179.97438 * 15 13 12 19 19 C 1.34780 * 120.00238 * 205.00118 * 18 15 13 20 20 O 1.21703 * 119.99667 * 0.02562 * 19 18 15 21 21 C 1.46652 * 120.00564 * 180.02562 * 19 18 15 22 22 C 1.36536 * 125.99429 * 179.71442 * 21 19 18 23 23 C 1.40358 * 106.71169 * 179.85142 * 22 21 19 24 24 C 1.35127 * 107.11606 * 0.41276 * 23 22 21 25 25 O 1.33933 * 108.76372 * 359.74420 * 24 23 22 26 26 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 27 27 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 29 29 H 0.97001 * 119.99839 * 180.02562 * 7 6 4 30 30 H 0.96992 * 120.00062 * 265.00053 * 12 2 1 31 31 H 1.09002 * 109.46901 * 59.99949 * 17 15 13 32 32 H 1.09002 * 109.47080 * 179.97438 * 17 15 13 33 33 H 1.08993 * 109.47207 * 299.99904 * 17 15 13 34 34 H 0.97001 * 120.00223 * 25.00779 * 18 15 13 35 35 H 1.08001 * 126.64243 * 359.96582 * 22 21 19 36 36 H 1.08006 * 126.44348 * 180.15613 * 23 22 21 37 37 H 1.08003 * 125.61855 * 179.70714 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9436 0.8301 2.6034 8 14 2.3215 -1.1204 4.0079 9 1 3.1456 -2.2878 3.6036 10 1 3.1467 -0.1875 4.8164 11 1 1.1663 -1.5869 4.8160 12 7 2.0184 -0.6906 -1.1962 13 6 2.1470 -0.0182 -2.3572 14 8 1.8589 1.1587 -2.4114 15 6 2.6488 -0.7286 -3.5878 16 1 1.9759 -1.5504 -3.8327 17 6 4.0513 -1.2796 -3.3224 18 7 2.6976 0.2127 -4.7093 19 6 2.6178 -0.2427 -5.9753 20 8 2.5048 -1.4359 -6.1868 21 6 2.6671 0.6994 -7.0981 22 6 2.6027 0.3736 -8.4224 23 6 2.6821 1.5780 -9.1387 24 6 2.7996 2.5730 -8.2320 25 8 2.7902 2.0396 -7.0035 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5139 -0.8900 29 1 0.7096 1.1617 3.4844 30 1 2.2491 -1.6316 -1.1527 31 1 4.0145 -1.9801 -2.4881 32 1 4.4140 -1.7938 -4.2124 33 1 4.7241 -0.4579 -3.0775 34 1 2.7873 1.1637 -4.5408 35 1 2.5070 -0.6186 -8.8382 36 1 2.6585 1.6885 -10.2129 37 1 2.8872 3.6250 -8.4603 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000194745230.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:59:29 Heat of formation + Delta-G solvation = -62.530028 kcal Electronic energy + Delta-G solvation = -21390.487975 eV Core-core repulsion = 17941.587644 eV Total energy + Delta-G solvation = -3448.900331 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.86576 -40.01107 -38.67218 -35.30240 -34.62419 -33.28046 -32.59364 -31.29943 -29.69110 -28.51789 -25.32115 -24.83362 -23.13029 -21.97126 -21.00213 -20.31380 -19.58597 -18.91055 -17.26268 -16.58797 -16.48613 -16.08881 -15.47998 -15.23670 -14.83890 -14.54258 -14.19747 -13.69965 -13.36858 -13.23825 -13.19428 -12.88942 -12.62970 -12.32077 -12.21734 -11.81899 -11.47092 -11.14261 -10.99291 -10.79445 -10.42102 -10.34132 -10.29070 -10.27949 -9.44684 -9.10358 -9.06199 -8.85279 -8.60579 -8.02682 -6.16633 -4.26161 0.88335 2.13348 2.48643 3.02256 3.06538 3.20575 3.21992 3.29705 3.32289 3.98076 4.32987 4.48967 4.66908 4.79860 5.13554 5.16190 5.17127 5.31361 5.40227 5.52808 5.64049 5.68801 5.83181 6.07870 6.17986 6.26511 6.61803 6.77299 6.90882 7.09136 7.33767 7.42259 7.48298 7.63641 7.84648 7.98473 8.09364 8.54060 8.70166 8.97000 9.41295 10.89393 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.039417 B = 0.003257 C = 0.003133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 710.187631 B = 8595.395777 C = 8934.868126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.264 3.736 3 H 0.050 0.950 4 C -0.534 4.534 5 H 0.063 0.937 6 C 0.066 3.934 7 N -0.883 5.883 8 Si 0.902 3.098 9 H -0.272 1.272 10 H -0.283 1.283 11 H -0.283 1.283 12 N -0.699 5.699 13 C 0.499 3.501 14 O -0.551 6.551 15 C 0.120 3.880 16 H 0.113 0.887 17 C -0.158 4.158 18 N -0.696 5.696 19 C 0.604 3.396 20 O -0.525 6.525 21 C -0.073 4.073 22 C -0.123 4.123 23 C -0.228 4.228 24 C -0.006 4.006 25 O -0.160 6.160 26 H 0.091 0.909 27 H 0.027 0.973 28 H 0.014 0.986 29 H 0.264 0.736 30 H 0.391 0.609 31 H 0.077 0.923 32 H 0.069 0.931 33 H 0.064 0.936 34 H 0.415 0.585 35 H 0.160 0.840 36 H 0.156 0.844 37 H 0.210 0.790 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.687 0.018 -18.786 19.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.163 3.837 3 H 0.068 0.932 4 C -0.573 4.573 5 H 0.081 0.919 6 C -0.137 4.137 7 N -0.520 5.520 8 Si 0.730 3.270 9 H -0.197 1.197 10 H -0.209 1.209 11 H -0.209 1.209 12 N -0.347 5.347 13 C 0.282 3.718 14 O -0.430 6.430 15 C 0.012 3.988 16 H 0.130 0.870 17 C -0.216 4.216 18 N -0.348 5.348 19 C 0.391 3.609 20 O -0.404 6.404 21 C -0.126 4.126 22 C -0.144 4.144 23 C -0.247 4.247 24 C -0.076 4.076 25 O -0.055 6.055 26 H 0.110 0.890 27 H 0.047 0.953 28 H 0.034 0.966 29 H 0.074 0.926 30 H 0.224 0.776 31 H 0.096 0.904 32 H 0.088 0.912 33 H 0.083 0.917 34 H 0.253 0.747 35 H 0.178 0.822 36 H 0.174 0.826 37 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges 4.322 0.284 -18.446 18.948 hybrid contribution 0.359 -0.383 0.694 0.870 sum 4.681 -0.099 -17.752 18.359 Atomic orbital electron populations 1.22090 0.98336 0.99263 1.00985 1.18804 0.91114 0.94023 0.79782 0.93222 1.21240 1.32523 1.13290 0.90213 0.91900 1.24893 0.94766 0.94945 0.99112 1.69909 1.35841 1.22431 1.23854 0.86378 0.78619 0.79526 0.82491 1.19684 1.20869 1.20857 1.46489 1.64329 1.13715 1.10162 1.20290 0.79015 0.87635 0.84841 1.90663 1.51619 1.15921 1.84832 1.20944 0.99507 0.92654 0.85681 0.86959 1.22111 0.94789 1.01775 1.02938 1.45668 1.72689 1.12144 1.04284 1.16510 0.76943 0.86343 0.81153 1.90874 1.51013 1.14199 1.84311 1.22069 1.13490 0.81053 0.95949 1.21964 1.00789 1.00455 0.91161 1.21857 1.09633 0.92001 1.01207 1.24447 1.02439 0.99906 0.80833 1.84119 1.69702 1.19958 1.31718 0.89031 0.95337 0.96648 0.92577 0.77572 0.90402 0.91246 0.91655 0.74688 0.82199 0.82607 0.77330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.64 9.26 37.16 0.34 -3.30 16 2 C 0.26 6.56 2.56 -69.08 -0.18 6.38 16 3 H 0.05 1.42 7.58 -51.93 -0.39 1.03 16 4 C -0.53 -13.83 8.73 -34.44 -0.30 -14.13 16 5 H 0.06 1.55 7.74 -52.49 -0.41 1.15 16 6 C 0.07 1.75 5.30 -17.82 -0.09 1.66 16 7 N -0.88 -24.52 11.32 55.43 0.63 -23.89 16 8 Si 0.90 20.33 29.54 -169.99 -5.02 15.31 16 9 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 10 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 11 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 12 N -0.70 -13.99 4.96 -54.93 -0.27 -14.26 16 13 C 0.50 9.56 7.19 -10.99 -0.08 9.48 16 14 O -0.55 -12.50 15.50 5.55 0.09 -12.41 16 15 C 0.12 1.82 2.98 -69.09 -0.21 1.62 16 16 H 0.11 1.66 7.57 -51.93 -0.39 1.26 16 17 C -0.16 -2.03 9.38 37.16 0.35 -1.68 16 18 N -0.70 -10.32 4.95 -56.25 -0.28 -10.60 16 19 C 0.60 8.93 7.75 -12.86 -0.10 8.83 16 20 O -0.53 -8.76 16.53 5.19 0.09 -8.68 16 21 C -0.07 -0.94 7.13 -36.80 -0.26 -1.21 16 22 C -0.12 -1.34 10.62 -39.40 -0.42 -1.76 16 23 C -0.23 -1.91 10.87 -39.89 -0.43 -2.35 16 24 C -0.01 -0.05 12.08 29.63 0.36 0.31 16 25 O -0.16 -1.87 10.40 4.99 0.05 -1.82 16 26 H 0.09 2.45 6.07 -51.93 -0.32 2.13 16 27 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 30 H 0.39 6.73 7.96 -40.82 -0.32 6.40 16 31 H 0.08 0.91 7.56 -51.93 -0.39 0.52 16 32 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.42 6.20 7.55 -40.82 -0.31 5.89 16 35 H 0.16 1.58 8.06 -52.49 -0.42 1.15 16 36 H 0.16 0.87 8.06 -52.48 -0.42 0.44 16 37 H 0.21 0.82 8.06 -52.48 -0.42 0.40 16 LS Contribution 325.45 15.07 4.90 4.90 Total: -1.00 -31.66 325.45 -5.47 -37.13 By element: Atomic # 1 Polarization: 15.10 SS G_CDS: -4.63 Total: 10.47 kcal Atomic # 6 Polarization: 4.87 SS G_CDS: -1.02 Total: 3.85 kcal Atomic # 7 Polarization: -48.83 SS G_CDS: 0.08 Total: -48.75 kcal Atomic # 8 Polarization: -23.13 SS G_CDS: 0.22 Total: -22.91 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -5.02 Total: 15.31 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -31.66 -5.47 -37.13 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194745230.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.405 kcal (2) G-P(sol) polarization free energy of solvation -31.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.125 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds