Wall clock time and date at job start Tue Mar 31 2020 01:59:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.50697 * 109.47466 * 120.00144 * 2 1 3 5 5 H 1.07998 * 120.00039 * 119.99581 * 4 2 1 6 6 C 1.37880 * 119.99815 * 300.00179 * 4 2 1 7 7 N 1.31508 * 119.99915 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99777 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.47152 * 359.97438 * 8 6 4 10 10 H 1.48494 * 109.47204 * 119.99883 * 8 6 4 11 11 H 1.48496 * 109.47191 * 240.00215 * 8 6 4 12 12 N 1.46506 * 109.47289 * 240.00326 * 2 1 3 13 13 C 1.34777 * 120.00033 * 84.99600 * 12 2 1 14 14 O 1.21287 * 119.99681 * 0.02562 * 13 12 2 15 15 C 1.50696 * 120.00198 * 180.02562 * 13 12 2 16 16 H 1.09001 * 109.46822 * 60.00123 * 15 13 12 17 17 C 1.52998 * 109.47151 * 300.00325 * 15 13 12 18 18 N 1.46496 * 109.47214 * 179.97438 * 15 13 12 19 19 C 1.34780 * 120.00238 * 205.00118 * 18 15 13 20 20 O 1.21703 * 119.99667 * 0.02562 * 19 18 15 21 21 C 1.46652 * 120.00564 * 180.02562 * 19 18 15 22 22 C 1.36536 * 125.99429 * 179.71442 * 21 19 18 23 23 C 1.40358 * 106.71169 * 179.85142 * 22 21 19 24 24 C 1.35127 * 107.11606 * 0.41276 * 23 22 21 25 25 O 1.33933 * 108.76372 * 359.74420 * 24 23 22 26 26 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 27 27 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 29 29 H 0.97001 * 119.99839 * 180.02562 * 7 6 4 30 30 H 0.96992 * 120.00062 * 265.00053 * 12 2 1 31 31 H 1.09002 * 109.46901 * 59.99949 * 17 15 13 32 32 H 1.09002 * 109.47080 * 179.97438 * 17 15 13 33 33 H 1.08993 * 109.47207 * 299.99904 * 17 15 13 34 34 H 0.97001 * 120.00223 * 25.00779 * 18 15 13 35 35 H 1.08001 * 126.64243 * 359.96582 * 22 21 19 36 36 H 1.08006 * 126.44348 * 180.15613 * 23 22 21 37 37 H 1.08003 * 125.61855 * 179.70714 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9436 0.8301 2.6034 8 14 2.3215 -1.1204 4.0079 9 1 3.1456 -2.2878 3.6036 10 1 3.1467 -0.1875 4.8164 11 1 1.1663 -1.5869 4.8160 12 7 2.0184 -0.6906 -1.1962 13 6 2.1470 -0.0182 -2.3572 14 8 1.8589 1.1587 -2.4114 15 6 2.6488 -0.7286 -3.5878 16 1 1.9759 -1.5504 -3.8327 17 6 4.0513 -1.2796 -3.3224 18 7 2.6976 0.2127 -4.7093 19 6 2.6178 -0.2427 -5.9753 20 8 2.5048 -1.4359 -6.1868 21 6 2.6671 0.6994 -7.0981 22 6 2.6027 0.3736 -8.4224 23 6 2.6821 1.5780 -9.1387 24 6 2.7996 2.5730 -8.2320 25 8 2.7902 2.0396 -7.0035 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5139 -0.8900 29 1 0.7096 1.1617 3.4844 30 1 2.2491 -1.6316 -1.1527 31 1 4.0145 -1.9801 -2.4881 32 1 4.4140 -1.7938 -4.2124 33 1 4.7241 -0.4579 -3.0775 34 1 2.7873 1.1637 -4.5408 35 1 2.5070 -0.6186 -8.8382 36 1 2.6585 1.6885 -10.2129 37 1 2.8872 3.6250 -8.4603 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000194745230.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:59:29 Heat of formation + Delta-G solvation = -85.746552 kcal Electronic energy + Delta-G solvation = -21391.494719 eV Core-core repulsion = 17941.587644 eV Total energy + Delta-G solvation = -3449.907075 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -43.65569 -41.35855 -40.09307 -36.94320 -36.10522 -34.44872 -34.04796 -32.56986 -30.87930 -30.01553 -27.35346 -26.01854 -24.33176 -22.80416 -22.53477 -21.38115 -21.18439 -20.06099 -18.76596 -17.71032 -17.58713 -17.37679 -17.01625 -16.80366 -16.26341 -15.90433 -15.48300 -15.18651 -14.74230 -14.48118 -14.18450 -13.94305 -13.81739 -13.63523 -13.54133 -13.33914 -13.00466 -12.90283 -12.75149 -12.66710 -12.28799 -12.11628 -11.56890 -11.10531 -11.05072 -10.88737 -10.61365 -10.40931 -9.82986 -9.67505 -8.17908 -6.35015 -0.00359 1.41732 1.45234 1.46480 1.55848 1.59193 1.63164 1.99628 2.06418 2.37269 2.58001 3.13217 3.60087 3.77994 3.96272 3.98509 4.07119 4.11420 4.57966 4.63175 4.71978 4.76094 4.90100 4.90629 4.94809 5.07572 5.11530 5.13893 5.40139 5.41102 5.57360 5.65894 5.82379 5.87153 6.07984 6.30424 6.71894 6.78652 6.90016 7.28625 7.43882 8.88638 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.039417 B = 0.003257 C = 0.003133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 710.187631 B = 8595.395777 C = 8934.868126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.271 3.729 3 H 0.004 0.996 4 C -0.545 4.545 5 H 0.076 0.924 6 C 0.014 3.986 7 N -0.917 5.917 8 Si 0.972 3.028 9 H -0.259 1.259 10 H -0.284 1.284 11 H -0.280 1.280 12 N -0.694 5.694 13 C 0.499 3.501 14 O -0.589 6.589 15 C 0.132 3.868 16 H 0.121 0.879 17 C -0.151 4.151 18 N -0.699 5.699 19 C 0.606 3.394 20 O -0.552 6.552 21 C -0.115 4.115 22 C -0.118 4.118 23 C -0.232 4.232 24 C 0.008 3.992 25 O -0.178 6.178 26 H 0.068 0.932 27 H 0.041 0.959 28 H 0.011 0.989 29 H 0.265 0.735 30 H 0.408 0.592 31 H 0.092 0.908 32 H 0.078 0.922 33 H 0.062 0.938 34 H 0.414 0.586 35 H 0.165 0.835 36 H 0.188 0.812 37 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.632 -0.744 -20.062 20.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.168 3.832 3 H 0.022 0.978 4 C -0.583 4.583 5 H 0.094 0.906 6 C -0.186 4.186 7 N -0.556 5.556 8 Si 0.797 3.203 9 H -0.182 1.182 10 H -0.210 1.210 11 H -0.206 1.206 12 N -0.343 5.343 13 C 0.285 3.715 14 O -0.470 6.470 15 C 0.024 3.976 16 H 0.138 0.862 17 C -0.209 4.209 18 N -0.351 5.351 19 C 0.394 3.606 20 O -0.433 6.433 21 C -0.166 4.166 22 C -0.138 4.138 23 C -0.250 4.250 24 C -0.062 4.062 25 O -0.073 6.073 26 H 0.086 0.914 27 H 0.060 0.940 28 H 0.030 0.970 29 H 0.074 0.926 30 H 0.244 0.756 31 H 0.111 0.889 32 H 0.097 0.903 33 H 0.081 0.919 34 H 0.251 0.749 35 H 0.183 0.817 36 H 0.205 0.795 37 H 0.269 0.731 Dipole moment (debyes) X Y Z Total from point charges 5.284 -0.513 -19.748 20.449 hybrid contribution 0.051 -0.030 0.956 0.958 sum 5.336 -0.543 -18.792 19.542 Atomic orbital electron populations 1.21927 0.98368 0.99572 0.99635 1.18397 0.91048 0.92140 0.81634 0.97845 1.21570 1.32535 1.13598 0.90603 0.90562 1.25787 0.94876 0.95573 1.02325 1.70053 1.37032 1.23941 1.24562 0.85294 0.78048 0.78560 0.78421 1.18234 1.21034 1.20627 1.46196 1.64404 1.14387 1.09289 1.20945 0.77821 0.87186 0.85555 1.90644 1.53014 1.17854 1.85536 1.20859 1.00909 0.92167 0.83689 0.86162 1.22094 0.92918 1.01905 1.03978 1.45702 1.72985 1.11944 1.04433 1.16727 0.76059 0.86487 0.81321 1.90840 1.52428 1.15272 1.84721 1.21784 1.17376 0.81632 0.95810 1.22282 0.98967 1.01791 0.90786 1.22245 1.09263 0.90714 1.02783 1.25433 0.99424 1.01755 0.79539 1.84107 1.70210 1.19448 1.33573 0.91358 0.94018 0.96966 0.92561 0.75636 0.88905 0.90265 0.91935 0.74894 0.81707 0.79472 0.73129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.83 9.26 71.98 0.67 -6.17 16 2 C 0.27 13.70 2.56 44.24 0.11 13.82 16 3 H 0.00 0.22 7.58 -2.39 -0.02 0.20 16 4 C -0.54 -28.07 8.73 25.60 0.22 -27.85 16 5 H 0.08 3.64 7.74 -2.91 -0.02 3.62 16 6 C 0.01 0.76 5.30 84.66 0.45 1.21 16 7 N -0.92 -51.88 11.32 21.45 0.24 -51.63 16 8 Si 0.97 41.29 29.54 68.60 2.03 43.31 16 9 H -0.26 -10.33 7.11 99.48 0.71 -9.62 16 10 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 11 H -0.28 -11.75 7.11 99.48 0.71 -11.04 16 12 N -0.69 -27.70 4.96 -446.09 -2.21 -29.92 16 13 C 0.50 19.31 7.19 87.66 0.63 19.94 16 14 O -0.59 -27.53 15.50 -3.05 -0.05 -27.58 16 15 C 0.13 3.94 2.98 44.24 0.13 4.07 16 16 H 0.12 3.45 7.57 -2.39 -0.02 3.43 16 17 C -0.15 -3.68 9.38 71.98 0.68 -3.00 16 18 N -0.70 -20.89 4.95 -450.10 -2.23 -23.12 16 19 C 0.61 17.95 7.75 86.44 0.67 18.62 16 20 O -0.55 -18.37 16.53 -4.36 -0.07 -18.44 16 21 C -0.11 -2.90 7.13 24.07 0.17 -2.73 16 22 C -0.12 -2.41 10.62 22.39 0.24 -2.17 16 23 C -0.23 -3.23 10.87 22.07 0.24 -2.99 16 24 C 0.01 0.11 12.08 67.10 0.81 0.92 16 25 O -0.18 -3.97 10.40 -5.07 -0.05 -4.02 16 26 H 0.07 3.75 6.07 -2.39 -0.01 3.74 16 27 H 0.04 1.92 8.14 -2.39 -0.02 1.90 16 28 H 0.01 0.57 8.14 -2.38 -0.02 0.55 16 29 H 0.27 14.18 8.31 -92.71 -0.77 13.41 16 30 H 0.41 13.53 7.96 -92.71 -0.74 12.79 16 31 H 0.09 1.98 7.56 -2.39 -0.02 1.96 16 32 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 33 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 34 H 0.41 12.67 7.55 -92.71 -0.70 11.98 16 35 H 0.17 3.08 8.06 -2.91 -0.02 3.06 16 36 H 0.19 1.33 8.06 -2.91 -0.02 1.31 16 37 H 0.25 0.92 8.06 -2.91 -0.02 0.89 16 Total: -1.00 -69.93 325.45 2.35 -67.58 By element: Atomic # 1 Polarization: 30.47 SS G_CDS: -0.33 Total: 30.14 kcal Atomic # 6 Polarization: 8.66 SS G_CDS: 5.02 Total: 13.68 kcal Atomic # 7 Polarization: -100.47 SS G_CDS: -4.20 Total: -104.67 kcal Atomic # 8 Polarization: -49.87 SS G_CDS: -0.17 Total: -50.04 kcal Atomic # 14 Polarization: 41.29 SS G_CDS: 2.03 Total: 43.31 kcal Total: -69.93 2.35 -67.58 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194745230.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.163 kcal (2) G-P(sol) polarization free energy of solvation -69.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.583 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds