Wall clock time and date at job start Tue Mar 31 2020 02:04:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 109.47363 * 2 1 4 4 C 1.52998 * 109.47220 * 120.00802 * 2 1 3 5 5 O 1.42900 * 109.47471 * 54.99796 * 4 2 1 6 6 N 1.46506 * 109.46776 * 240.00236 * 2 1 3 7 7 C 1.34778 * 119.99665 * 85.00372 * 6 2 1 8 8 O 1.21587 * 119.99998 * 0.26734 * 7 6 2 9 9 N 1.34779 * 119.99811 * 179.97438 * 7 6 2 10 10 C 1.39946 * 119.99600 * 174.82986 * 9 7 6 11 11 C 1.38951 * 120.03798 * 326.19270 * 10 9 7 12 12 C 1.38168 * 120.06655 * 179.71930 * 11 10 9 13 13 C 1.38173 * 120.13591 * 0.55753 * 12 11 10 14 14 C 1.38907 * 120.06813 * 359.71703 * 13 12 11 15 15 O 1.35753 * 120.03432 * 179.97438 * 14 13 12 16 16 C 1.34834 * 117.00120 * 185.92883 * 15 14 13 17 17 H 1.07999 * 119.99871 * 5.41972 * 16 15 14 18 18 C 1.38647 * 119.99688 * 185.41490 * 16 15 14 19 19 N 1.31559 * 120.00273 * 0.02562 * 18 16 15 20 20 Si 1.86805 * 119.99940 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.47172 * 59.99423 * 20 18 16 22 22 H 1.48501 * 109.47097 * 180.02562 * 20 18 16 23 23 H 1.48507 * 109.46632 * 300.00057 * 20 18 16 24 24 C 1.38709 * 120.03144 * 146.46572 * 10 9 7 25 25 H 1.08994 * 109.47121 * 59.99328 * 1 2 3 26 26 H 1.08999 * 109.47363 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.46578 * 299.99820 * 1 2 3 28 28 H 1.08996 * 109.47376 * 174.99699 * 4 2 1 29 29 H 1.09004 * 109.46834 * 294.99143 * 4 2 1 30 30 H 0.96694 * 113.99993 * 180.02562 * 5 4 2 31 31 H 0.96991 * 120.00118 * 265.00334 * 6 2 1 32 32 H 0.96997 * 119.99859 * 354.83252 * 9 7 6 33 33 H 1.07995 * 119.97101 * 359.97438 * 11 10 9 34 34 H 1.07997 * 119.93398 * 180.25219 * 12 11 10 35 35 H 1.07996 * 119.96301 * 179.70302 * 13 12 11 36 36 H 0.97005 * 119.99899 * 180.02562 * 19 18 16 37 37 H 1.08002 * 120.06996 * 359.97438 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 1.2491 5 8 1.4703 -2.0305 1.3092 6 7 2.0183 -0.6906 -1.1963 7 6 2.1470 -0.0181 -2.3572 8 8 1.8625 1.1628 -2.4104 9 7 2.5967 -0.6533 -3.4576 10 6 2.6282 0.0144 -4.6871 11 6 1.6507 0.9531 -4.9940 12 6 1.6846 1.6170 -6.2053 13 6 2.6832 1.3414 -7.1197 14 6 3.6599 0.4000 -6.8210 15 8 4.6403 0.1295 -7.7201 16 6 5.4835 -0.8794 -7.4213 17 1 5.3096 -1.4871 -6.5456 18 6 6.5737 -1.1366 -8.2384 19 7 6.7858 -0.3961 -9.3049 20 14 7.7416 -2.5347 -7.8249 21 1 6.9931 -3.8172 -7.8110 22 1 8.8173 -2.5998 -8.8466 23 1 8.3431 -2.2981 -6.4879 24 6 3.6320 -0.2643 -5.6029 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3632 0.5138 0.8900 28 1 3.1263 -0.7997 1.2055 29 1 1.7518 -0.1585 2.1369 30 1 1.7500 -2.5463 2.0778 31 1 2.2489 -1.6317 -1.1528 32 1 2.8984 -1.5732 -3.3973 33 1 0.8662 1.1671 -4.2834 34 1 0.9261 2.3491 -6.4400 35 1 2.7041 1.8585 -8.0676 36 1 7.5484 -0.5763 -9.8767 37 1 4.3905 -0.9964 -5.3683 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000271565880.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:04:42 Heat of formation + Delta-G solvation = -77.150143 kcal Electronic energy + Delta-G solvation = -21257.338328 eV Core-core repulsion = 17807.804021 eV Total energy + Delta-G solvation = -3449.534307 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.39831 -38.85081 -37.78734 -36.44375 -34.78848 -34.15916 -32.21825 -31.01706 -29.11591 -28.22332 -26.72302 -25.27093 -22.83326 -21.75558 -20.94811 -20.40217 -18.70427 -17.93107 -17.66784 -17.35139 -16.17463 -15.41029 -15.23403 -14.88582 -14.70564 -14.53665 -14.18086 -13.94206 -13.68219 -13.51651 -13.09076 -12.91646 -12.61471 -12.26681 -11.83978 -11.67325 -11.46751 -11.22670 -11.10873 -10.91863 -10.77660 -10.48285 -10.45552 -9.97862 -9.60908 -9.42484 -9.15016 -8.77476 -7.65724 -7.08905 -6.42102 -4.01820 2.11222 2.44784 2.72656 3.12870 3.13895 3.17083 3.35772 3.84235 3.97883 4.26548 4.56092 4.65929 4.76417 4.98007 5.13004 5.23519 5.32420 5.34042 5.56204 5.72686 5.82533 6.05595 6.12931 6.16096 6.30200 6.31580 6.46239 6.61896 6.86087 7.05482 7.14877 7.17434 7.34091 7.38710 7.47355 7.87801 8.02152 8.09414 8.69405 9.03234 9.74606 10.76071 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.020485 B = 0.003841 C = 0.003296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1366.553933 B = 7287.571419 C = 8493.164626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.163 3.837 3 H 0.100 0.900 4 C 0.067 3.933 5 O -0.570 6.570 6 N -0.739 5.739 7 C 0.703 3.297 8 O -0.572 6.572 9 N -0.683 5.683 10 C 0.200 3.800 11 C -0.204 4.204 12 C -0.063 4.063 13 C -0.203 4.203 14 C 0.169 3.831 15 O -0.177 6.177 16 C -0.392 4.392 17 H 0.089 0.911 18 C 0.039 3.961 19 N -0.863 5.863 20 Si 0.940 3.060 21 H -0.270 1.270 22 H -0.278 1.278 23 H -0.271 1.271 24 C -0.258 4.258 25 H 0.061 0.939 26 H 0.064 0.936 27 H 0.061 0.939 28 H 0.053 0.947 29 H 0.062 0.938 30 H 0.380 0.620 31 H 0.399 0.601 32 H 0.402 0.598 33 H 0.119 0.881 34 H 0.115 0.885 35 H 0.118 0.882 36 H 0.270 0.730 37 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.495 -3.807 19.432 21.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.057 3.943 3 H 0.118 0.882 4 C -0.011 4.011 5 O -0.375 6.375 6 N -0.396 5.396 7 C 0.403 3.597 8 O -0.449 6.449 9 N -0.329 5.329 10 C 0.106 3.894 11 C -0.226 4.226 12 C -0.081 4.081 13 C -0.223 4.223 14 C 0.115 3.885 15 O -0.081 6.081 16 C -0.468 4.468 17 H 0.106 0.894 18 C -0.165 4.165 19 N -0.498 5.498 20 Si 0.764 3.236 21 H -0.196 1.196 22 H -0.203 1.203 23 H -0.196 1.196 24 C -0.280 4.280 25 H 0.080 0.920 26 H 0.083 0.917 27 H 0.080 0.920 28 H 0.072 0.928 29 H 0.080 0.920 30 H 0.228 0.772 31 H 0.233 0.767 32 H 0.237 0.763 33 H 0.137 0.863 34 H 0.133 0.867 35 H 0.136 0.864 36 H 0.080 0.920 37 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -8.821 -2.409 18.471 20.610 hybrid contribution 1.247 -1.823 0.934 2.398 sum -7.574 -4.232 19.405 21.256 Atomic orbital electron populations 1.22090 0.94827 1.02716 1.02198 1.20884 0.94938 0.96487 0.81948 0.88245 1.22514 0.96986 0.84254 0.97389 1.86491 1.73029 1.27245 1.50752 1.45131 1.71826 1.13845 1.08781 1.15932 0.78474 0.85123 0.80135 1.90939 1.56131 1.13722 1.84075 1.42598 1.67453 1.16243 1.06619 1.17182 0.94213 0.94749 0.83264 1.20557 1.00931 1.02714 0.98351 1.20525 0.96969 0.97880 0.92776 1.20233 0.97127 1.03432 1.01494 1.19061 0.89209 0.92240 0.87969 1.84022 1.35799 1.48551 1.39679 1.21217 1.05850 1.07469 1.12290 0.89352 1.25263 0.97012 0.98787 0.95412 1.70030 1.28621 1.37964 1.13229 0.85811 0.79334 0.80007 0.78411 1.19551 1.20282 1.19627 1.20779 1.01497 1.09427 0.96325 0.91963 0.91661 0.92049 0.92840 0.92019 0.77243 0.76655 0.76344 0.86284 0.86669 0.86431 0.92005 0.85343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.60 9.29 37.16 0.35 -1.25 16 2 C 0.16 1.62 2.98 -67.93 -0.20 1.41 16 3 H 0.10 1.11 7.57 -51.93 -0.39 0.71 16 4 C 0.07 0.44 6.79 37.16 0.25 0.70 16 5 O -0.57 -3.75 12.51 -35.23 -0.44 -4.19 16 6 N -0.74 -8.46 5.06 -58.67 -0.30 -8.75 16 7 C 0.70 11.08 8.26 -86.92 -0.72 10.36 16 8 O -0.57 -11.08 13.73 5.29 0.07 -11.01 16 9 N -0.68 -10.84 5.35 -14.24 -0.08 -10.92 16 10 C 0.20 3.97 6.27 -83.71 -0.52 3.44 16 11 C -0.20 -4.08 8.65 -39.34 -0.34 -4.42 16 12 C -0.06 -1.22 10.03 -39.63 -0.40 -1.62 16 13 C -0.20 -4.46 9.99 -39.36 -0.39 -4.86 16 14 C 0.17 4.18 6.64 -39.14 -0.26 3.92 16 15 O -0.18 -5.10 9.76 0.03 0.00 -5.10 16 16 C -0.39 -10.96 9.44 30.88 0.29 -10.67 16 17 H 0.09 2.26 5.30 -52.49 -0.28 1.99 16 18 C 0.04 1.08 5.49 -17.52 -0.10 0.99 16 19 N -0.86 -25.44 13.67 55.48 0.76 -24.68 16 20 Si 0.94 20.42 29.55 -169.99 -5.02 15.40 16 21 H -0.27 -5.66 7.11 56.52 0.40 -5.25 16 22 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 23 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 24 C -0.26 -5.72 9.04 -39.21 -0.35 -6.08 16 25 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 26 H 0.06 0.67 7.56 -51.93 -0.39 0.28 16 27 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.38 0.87 9.12 45.56 0.42 1.29 16 31 H 0.40 3.75 8.40 -40.82 -0.34 3.40 16 32 H 0.40 5.08 8.83 -40.82 -0.36 4.72 16 33 H 0.12 2.35 6.45 -52.49 -0.34 2.01 16 34 H 0.12 1.87 8.06 -52.49 -0.42 1.45 16 35 H 0.12 2.46 8.06 -52.49 -0.42 2.04 16 36 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 37 H 0.13 2.78 5.72 -52.49 -0.30 2.48 16 LS Contribution 319.77 15.07 4.82 4.82 Total: -1.00 -34.80 319.77 -6.25 -41.05 By element: Atomic # 1 Polarization: 15.13 SS G_CDS: -3.66 Total: 11.47 kcal Atomic # 6 Polarization: -5.68 SS G_CDS: -2.40 Total: -8.08 kcal Atomic # 7 Polarization: -44.74 SS G_CDS: 0.39 Total: -44.36 kcal Atomic # 8 Polarization: -19.93 SS G_CDS: -0.37 Total: -20.30 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.40 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -34.80 -6.25 -41.05 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271565880.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.103 kcal (2) G-P(sol) polarization free energy of solvation -34.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.047 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds