Wall clock time and date at job start Tue Mar 31 2020 02:04:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 109.47363 * 2 1 4 4 C 1.52998 * 109.47220 * 120.00802 * 2 1 3 5 5 O 1.42900 * 109.47471 * 54.99796 * 4 2 1 6 6 N 1.46506 * 109.46776 * 240.00236 * 2 1 3 7 7 C 1.34778 * 119.99665 * 85.00372 * 6 2 1 8 8 O 1.21587 * 119.99998 * 0.26734 * 7 6 2 9 9 N 1.34779 * 119.99811 * 179.97438 * 7 6 2 10 10 C 1.39946 * 119.99600 * 174.82986 * 9 7 6 11 11 C 1.38951 * 120.03798 * 326.19270 * 10 9 7 12 12 C 1.38168 * 120.06655 * 179.71930 * 11 10 9 13 13 C 1.38173 * 120.13591 * 0.55753 * 12 11 10 14 14 C 1.38907 * 120.06813 * 359.71703 * 13 12 11 15 15 O 1.35753 * 120.03432 * 179.97438 * 14 13 12 16 16 C 1.34834 * 117.00120 * 185.92883 * 15 14 13 17 17 H 1.07999 * 119.99871 * 5.41972 * 16 15 14 18 18 C 1.38647 * 119.99688 * 185.41490 * 16 15 14 19 19 N 1.31559 * 120.00273 * 0.02562 * 18 16 15 20 20 Si 1.86805 * 119.99940 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.47172 * 59.99423 * 20 18 16 22 22 H 1.48501 * 109.47097 * 180.02562 * 20 18 16 23 23 H 1.48507 * 109.46632 * 300.00057 * 20 18 16 24 24 C 1.38709 * 120.03144 * 146.46572 * 10 9 7 25 25 H 1.08994 * 109.47121 * 59.99328 * 1 2 3 26 26 H 1.08999 * 109.47363 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.46578 * 299.99820 * 1 2 3 28 28 H 1.08996 * 109.47376 * 174.99699 * 4 2 1 29 29 H 1.09004 * 109.46834 * 294.99143 * 4 2 1 30 30 H 0.96694 * 113.99993 * 180.02562 * 5 4 2 31 31 H 0.96991 * 120.00118 * 265.00334 * 6 2 1 32 32 H 0.96997 * 119.99859 * 354.83252 * 9 7 6 33 33 H 1.07995 * 119.97101 * 359.97438 * 11 10 9 34 34 H 1.07997 * 119.93398 * 180.25219 * 12 11 10 35 35 H 1.07996 * 119.96301 * 179.70302 * 13 12 11 36 36 H 0.97005 * 119.99899 * 180.02562 * 19 18 16 37 37 H 1.08002 * 120.06996 * 359.97438 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 1.2491 5 8 1.4703 -2.0305 1.3092 6 7 2.0183 -0.6906 -1.1963 7 6 2.1470 -0.0181 -2.3572 8 8 1.8625 1.1628 -2.4104 9 7 2.5967 -0.6533 -3.4576 10 6 2.6282 0.0144 -4.6871 11 6 1.6507 0.9531 -4.9940 12 6 1.6846 1.6170 -6.2053 13 6 2.6832 1.3414 -7.1197 14 6 3.6599 0.4000 -6.8210 15 8 4.6403 0.1295 -7.7201 16 6 5.4835 -0.8794 -7.4213 17 1 5.3096 -1.4871 -6.5456 18 6 6.5737 -1.1366 -8.2384 19 7 6.7858 -0.3961 -9.3049 20 14 7.7416 -2.5347 -7.8249 21 1 6.9931 -3.8172 -7.8110 22 1 8.8173 -2.5998 -8.8466 23 1 8.3431 -2.2981 -6.4879 24 6 3.6320 -0.2643 -5.6029 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3632 0.5138 0.8900 28 1 3.1263 -0.7997 1.2055 29 1 1.7518 -0.1585 2.1369 30 1 1.7500 -2.5463 2.0778 31 1 2.2489 -1.6317 -1.1528 32 1 2.8984 -1.5732 -3.3973 33 1 0.8662 1.1671 -4.2834 34 1 0.9261 2.3491 -6.4400 35 1 2.7041 1.8585 -8.0676 36 1 7.5484 -0.5763 -9.8767 37 1 4.3905 -0.9964 -5.3683 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000271565880.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:04:42 Heat of formation + Delta-G solvation = -105.242659 kcal Electronic energy + Delta-G solvation = -21258.556511 eV Core-core repulsion = 17807.804021 eV Total energy + Delta-G solvation = -3450.752490 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.73302 -40.51307 -38.75895 -37.90467 -35.73182 -35.61109 -34.22066 -32.08092 -30.78138 -29.81375 -27.38741 -27.25534 -24.15227 -23.48205 -22.09328 -21.63719 -20.17017 -19.44262 -19.05344 -18.32337 -17.42713 -16.88816 -16.57363 -16.43207 -15.98387 -15.80576 -15.59959 -15.44218 -15.20400 -14.60239 -14.50769 -14.27786 -13.75955 -13.57489 -13.30366 -13.20313 -12.77106 -12.62558 -12.46005 -12.44477 -12.13980 -11.97017 -11.49778 -11.33754 -11.10684 -10.90862 -10.71605 -10.18606 -9.32113 -8.82968 -8.44992 -6.13904 0.46128 0.72108 1.36560 1.47464 1.53119 1.55152 2.05028 2.19401 2.86222 3.12768 3.19069 3.40394 3.51011 3.89213 4.12987 4.13974 4.34488 4.42881 4.46596 4.60448 4.64119 4.65287 4.74459 4.84330 4.96553 5.04571 5.12188 5.33555 5.36117 5.49363 5.52254 5.68902 5.70483 5.97385 6.03039 6.22083 6.93440 6.95472 6.99297 7.45647 7.79078 8.77982 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.020485 B = 0.003841 C = 0.003296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1366.553933 B = 7287.571419 C = 8493.164626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.153 3.847 3 H 0.087 0.913 4 C 0.077 3.923 5 O -0.585 6.585 6 N -0.720 5.720 7 C 0.701 3.299 8 O -0.610 6.610 9 N -0.675 5.675 10 C 0.207 3.793 11 C -0.200 4.200 12 C -0.050 4.050 13 C -0.216 4.216 14 C 0.136 3.864 15 O -0.226 6.226 16 C -0.415 4.415 17 H 0.103 0.897 18 C -0.022 4.022 19 N -0.921 5.921 20 Si 1.019 2.981 21 H -0.255 1.255 22 H -0.274 1.274 23 H -0.258 1.258 24 C -0.262 4.262 25 H 0.034 0.966 26 H 0.063 0.937 27 H 0.081 0.919 28 H 0.061 0.939 29 H 0.084 0.916 30 H 0.400 0.600 31 H 0.412 0.588 32 H 0.418 0.582 33 H 0.128 0.872 34 H 0.154 0.846 35 H 0.120 0.880 36 H 0.273 0.727 37 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.128 -5.150 22.396 24.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.048 3.952 3 H 0.105 0.895 4 C -0.001 4.001 5 O -0.394 6.394 6 N -0.376 5.376 7 C 0.401 3.599 8 O -0.489 6.489 9 N -0.323 5.323 10 C 0.111 3.889 11 C -0.221 4.221 12 C -0.069 4.069 13 C -0.236 4.236 14 C 0.085 3.915 15 O -0.132 6.132 16 C -0.491 4.491 17 H 0.120 0.880 18 C -0.220 4.220 19 N -0.559 5.559 20 Si 0.838 3.162 21 H -0.179 1.179 22 H -0.198 1.198 23 H -0.182 1.182 24 C -0.284 4.284 25 H 0.054 0.946 26 H 0.082 0.918 27 H 0.100 0.900 28 H 0.079 0.921 29 H 0.102 0.898 30 H 0.251 0.749 31 H 0.249 0.751 32 H 0.256 0.744 33 H 0.146 0.854 34 H 0.171 0.829 35 H 0.138 0.862 36 H 0.082 0.918 37 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -9.494 -3.802 21.530 23.835 hybrid contribution 1.191 -1.319 0.217 1.790 sum -8.303 -5.122 21.747 23.835 Atomic orbital electron populations 1.22019 0.94794 1.02448 1.01888 1.21124 0.94985 0.96476 0.82585 0.89532 1.22382 0.97173 0.84476 0.96103 1.86432 1.73335 1.27314 1.52314 1.45070 1.70364 1.14331 1.07817 1.16085 0.78162 0.84798 0.80843 1.90912 1.57733 1.15471 1.84761 1.42468 1.67455 1.16877 1.05529 1.17193 0.93126 0.94398 0.84173 1.20842 1.00734 1.02084 0.98428 1.20906 0.96567 0.97706 0.91703 1.20466 0.97408 1.03294 1.02410 1.19574 0.89329 0.93798 0.88804 1.83988 1.37501 1.49895 1.41853 1.21780 1.06228 1.08028 1.13020 0.87965 1.26599 0.98639 1.01789 0.94954 1.70185 1.29909 1.40743 1.15027 0.84652 0.76596 0.76373 0.78609 1.17904 1.19816 1.18197 1.20795 1.02173 1.09318 0.96079 0.94644 0.91778 0.90019 0.92077 0.89754 0.74901 0.75144 0.74409 0.85448 0.82872 0.86214 0.91832 0.85292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.77 9.29 71.98 0.67 -2.10 16 2 C 0.15 2.70 2.98 44.99 0.13 2.83 16 3 H 0.09 1.79 7.57 -2.39 -0.02 1.78 16 4 C 0.08 0.76 6.79 71.98 0.49 1.25 16 5 O -0.58 -5.70 12.51 -148.98 -1.86 -7.57 16 6 N -0.72 -14.89 5.06 -457.80 -2.32 -17.21 16 7 C 0.70 20.93 8.26 179.05 1.48 22.41 16 8 O -0.61 -22.90 13.73 -3.99 -0.05 -22.95 16 9 N -0.68 -20.33 5.35 -317.23 -1.70 -22.02 16 10 C 0.21 7.99 6.27 38.13 0.24 8.23 16 11 C -0.20 -7.67 8.65 22.42 0.19 -7.48 16 12 C -0.05 -1.89 10.03 22.24 0.22 -1.66 16 13 C -0.22 -9.59 9.99 22.41 0.22 -9.36 16 14 C 0.14 6.92 6.64 22.56 0.15 7.07 16 15 O -0.23 -13.64 9.76 -22.81 -0.22 -13.86 16 16 C -0.41 -23.93 9.44 67.92 0.64 -23.29 16 17 H 0.10 5.33 5.30 -2.91 -0.02 5.32 16 18 C -0.02 -1.25 5.49 84.83 0.47 -0.79 16 19 N -0.92 -56.44 13.67 21.61 0.30 -56.15 16 20 Si 1.02 42.12 29.55 68.60 2.03 44.15 16 21 H -0.25 -9.78 7.11 99.48 0.71 -9.08 16 22 H -0.27 -10.96 7.11 99.48 0.71 -10.25 16 23 H -0.26 -9.97 7.11 99.48 0.71 -9.26 16 24 C -0.26 -11.65 9.04 22.51 0.20 -11.45 16 25 H 0.03 0.82 8.14 -2.39 -0.02 0.80 16 26 H 0.06 1.17 7.56 -2.39 -0.02 1.15 16 27 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 28 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 29 H 0.08 0.50 8.14 -2.39 -0.02 0.48 16 30 H 0.40 0.40 9.12 -74.06 -0.68 -0.27 16 31 H 0.41 6.58 8.40 -92.72 -0.78 5.80 16 32 H 0.42 9.71 8.83 -92.71 -0.82 8.89 16 33 H 0.13 4.77 6.45 -2.91 -0.02 4.75 16 34 H 0.15 4.53 8.06 -2.91 -0.02 4.51 16 35 H 0.12 5.15 8.06 -2.91 -0.02 5.12 16 36 H 0.27 15.34 8.31 -92.70 -0.77 14.56 16 37 H 0.13 5.62 5.72 -2.91 -0.02 5.60 16 Total: -1.00 -78.54 319.77 0.14 -78.40 By element: Atomic # 1 Polarization: 32.68 SS G_CDS: -1.13 Total: 31.55 kcal Atomic # 6 Polarization: -19.44 SS G_CDS: 5.11 Total: -14.33 kcal Atomic # 7 Polarization: -91.66 SS G_CDS: -3.72 Total: -95.38 kcal Atomic # 8 Polarization: -42.24 SS G_CDS: -2.14 Total: -44.38 kcal Atomic # 14 Polarization: 42.12 SS G_CDS: 2.03 Total: 44.15 kcal Total: -78.54 0.14 -78.40 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271565880.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.847 kcal (2) G-P(sol) polarization free energy of solvation -78.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.396 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds