Wall clock time and date at job start Tue Mar 31 2020 02:03:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 N 1.46500 * 109.47473 * 120.00128 * 2 1 3 5 5 C 1.34768 * 120.00056 * 275.00296 * 4 2 1 6 6 O 1.21618 * 120.00260 * 359.97438 * 5 4 2 7 7 C 1.47382 * 120.00259 * 179.97438 * 5 4 2 8 8 C 1.47014 * 127.19660 * 179.97438 * 7 5 4 9 9 C 1.34175 * 105.95829 * 179.97438 * 8 7 5 10 10 O 1.34213 * 109.12089 * 359.97438 * 9 8 7 11 11 C 1.33657 * 110.91032 * 359.76673 * 10 9 8 12 12 C 1.50706 * 109.47238 * 240.00493 * 2 1 3 13 13 O 1.21282 * 119.99865 * 240.00203 * 12 2 1 14 14 N 1.34774 * 120.00164 * 59.99708 * 12 2 1 15 15 C 1.46496 * 120.00339 * 180.02562 * 14 12 2 16 16 C 1.52992 * 109.47337 * 179.97438 * 15 14 12 17 17 C 1.50706 * 109.47161 * 179.97438 * 16 15 14 18 18 H 1.07998 * 119.99629 * 0.02562 * 17 16 15 19 19 C 1.37875 * 119.99955 * 179.97438 * 17 16 15 20 20 N 1.31514 * 119.99765 * 179.97438 * 19 17 16 21 21 Si 1.86803 * 120.00134 * 0.02562 * 19 17 16 22 22 H 1.48506 * 109.46844 * 89.99757 * 21 19 17 23 23 H 1.48498 * 109.46893 * 209.99585 * 21 19 17 24 24 H 1.48497 * 109.47080 * 329.99877 * 21 19 17 25 25 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 26 26 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 28 28 H 0.97001 * 119.99547 * 95.00125 * 4 2 1 29 29 H 1.08001 * 127.02508 * 359.97438 * 8 7 5 30 30 H 1.07993 * 125.44264 * 180.02562 * 9 8 7 31 31 H 1.08001 * 125.80038 * 180.26620 * 11 10 9 32 32 H 0.97005 * 119.99795 * 359.97438 * 14 12 2 33 33 H 1.08996 * 109.46956 * 300.00500 * 15 14 12 34 34 H 1.09001 * 109.47062 * 59.99678 * 15 14 12 35 35 H 1.08996 * 109.47747 * 300.00310 * 16 15 14 36 36 H 1.08998 * 109.47315 * 60.00427 * 16 15 14 37 37 H 0.97010 * 119.99963 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.1471 -0.0184 2.3570 6 8 1.8582 1.1618 2.4117 7 6 2.6379 -0.7132 3.5605 8 6 2.8383 -0.1388 4.8989 9 6 3.2939 -1.1409 5.6660 10 8 3.3860 -2.2556 4.9241 11 6 2.9949 -2.0255 3.6669 12 6 2.0324 -0.7103 -1.2306 13 8 2.7296 -1.6964 -1.1193 14 7 1.7068 -0.2498 -2.4546 15 6 2.1946 -0.9406 -3.6508 16 6 1.6842 -0.2196 -4.9000 17 6 2.1866 -0.9299 -6.1305 18 1 2.8075 -1.8080 -6.0314 19 6 1.8527 -0.4594 -7.3827 20 7 2.2916 -1.0789 -8.4566 21 14 0.7782 1.0590 -7.5540 22 1 1.6364 2.2701 -7.6002 23 1 -0.0143 0.9658 -8.8065 24 1 -0.1417 1.1482 -6.3917 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5139 -0.8900 28 1 2.2491 -1.6318 1.1525 29 1 2.6561 0.8815 5.2027 30 1 3.5455 -1.0633 6.7133 31 1 2.9685 -2.7542 2.8702 32 1 1.1487 0.5386 -2.5436 33 1 3.2846 -0.9411 -3.6510 34 1 1.8310 -1.9682 -3.6507 35 1 0.5942 -0.2195 -4.8996 36 1 2.0475 0.8080 -4.9004 37 1 2.0570 -0.7476 -9.3376 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273083905.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:03:33 Heat of formation + Delta-G solvation = -65.924637 kcal Electronic energy + Delta-G solvation = -20796.387946 eV Core-core repulsion = 17347.340413 eV Total energy + Delta-G solvation = -3449.047532 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.86656 -40.30416 -38.95397 -35.39627 -34.91917 -33.31465 -32.89871 -31.46371 -30.17314 -29.40917 -25.60563 -24.69019 -23.08577 -21.80643 -20.91890 -20.39247 -20.21986 -18.90828 -17.04798 -17.02832 -16.57513 -16.44193 -15.90368 -15.47498 -15.22931 -14.76465 -14.59977 -14.21091 -13.84586 -13.67278 -13.35867 -13.24062 -12.77302 -12.68389 -12.57937 -12.48654 -11.80219 -11.54647 -11.25895 -10.46548 -10.38728 -10.28088 -10.15807 -10.01257 -9.73090 -9.41786 -9.30491 -9.14282 -8.74188 -8.63246 -6.15040 -4.15733 1.02065 1.74208 2.55108 2.67279 2.74426 3.11862 3.22850 3.30626 3.31428 3.50322 4.25392 4.33538 4.34186 4.63708 4.77288 4.88256 4.99209 5.15843 5.17858 5.31437 5.41118 5.53946 5.61369 5.92527 5.93227 5.98910 6.11344 6.13499 6.47557 6.57875 6.58906 7.04629 7.16206 7.27062 7.60969 7.68973 7.98049 8.29805 8.40435 8.88698 9.44793 10.97856 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.042702 B = 0.002778 C = 0.002659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 655.543124 B =10076.961166 C =10529.241582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.125 3.875 3 H 0.115 0.885 4 N -0.708 5.708 5 C 0.591 3.409 6 O -0.538 6.538 7 C -0.236 4.236 8 C -0.164 4.164 9 C -0.042 4.042 10 O -0.174 6.174 11 C 0.027 3.973 12 C 0.505 3.495 13 O -0.545 6.545 14 N -0.717 5.717 15 C 0.130 3.870 16 C -0.023 4.023 17 C -0.524 4.524 18 H 0.076 0.924 19 C 0.069 3.931 20 N -0.897 5.897 21 Si 0.882 3.118 22 H -0.276 1.276 23 H -0.287 1.287 24 H -0.266 1.266 25 H 0.072 0.928 26 H 0.065 0.935 27 H 0.075 0.925 28 H 0.408 0.592 29 H 0.160 0.840 30 H 0.209 0.791 31 H 0.214 0.786 32 H 0.399 0.601 33 H 0.064 0.936 34 H 0.065 0.935 35 H 0.023 0.977 36 H 0.018 0.982 37 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.240 1.072 26.264 26.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.016 3.984 3 H 0.133 0.867 4 N -0.361 5.361 5 C 0.379 3.621 6 O -0.416 6.416 7 C -0.240 4.240 8 C -0.184 4.184 9 C -0.108 4.108 10 O -0.069 6.069 11 C -0.044 4.044 12 C 0.289 3.711 13 O -0.423 6.423 14 N -0.367 5.367 15 C 0.008 3.992 16 C -0.060 4.060 17 C -0.563 4.563 18 H 0.094 0.906 19 C -0.133 4.133 20 N -0.536 5.536 21 Si 0.709 3.291 22 H -0.202 1.202 23 H -0.212 1.212 24 H -0.190 1.190 25 H 0.091 0.909 26 H 0.084 0.916 27 H 0.094 0.906 28 H 0.245 0.755 29 H 0.178 0.822 30 H 0.226 0.774 31 H 0.230 0.770 32 H 0.233 0.767 33 H 0.082 0.918 34 H 0.083 0.917 35 H 0.041 0.959 36 H 0.037 0.963 37 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -1.840 0.933 26.246 26.327 hybrid contribution -0.715 0.928 -0.491 1.270 sum -2.555 1.861 25.755 25.948 Atomic orbital electron populations 1.22137 0.92679 1.03294 1.03687 1.20816 0.95781 0.98208 0.83587 0.86715 1.45569 1.67444 1.14691 1.08391 1.17226 0.77034 0.86050 0.81802 1.90788 1.50492 1.15332 1.84961 1.21475 1.12228 0.94551 0.95769 1.22784 1.03710 1.00951 0.90953 1.23967 1.05638 0.83405 0.97791 1.83810 1.66247 1.36824 1.19993 1.24575 0.97612 0.96797 0.85422 1.20434 0.80754 0.84939 0.84947 1.90677 1.38386 1.26573 1.86672 1.46272 1.52540 1.31827 1.06067 1.21572 0.99075 0.96307 0.82280 1.19803 0.96875 0.96305 0.93046 1.20894 1.32831 1.13941 0.88603 0.90623 1.25004 0.95597 0.96931 0.95748 1.69904 1.45271 1.40390 0.97990 0.86749 0.81038 0.83490 0.77783 1.20190 1.21246 1.19046 0.90865 0.91626 0.90598 0.75545 0.82245 0.77430 0.76992 0.76706 0.91754 0.91703 0.95896 0.96339 0.92500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.59 9.38 37.16 0.35 -1.24 16 2 C 0.12 1.48 2.98 -69.08 -0.21 1.28 16 3 H 0.12 1.39 7.58 -51.93 -0.39 0.99 16 4 N -0.71 -8.10 4.94 -56.02 -0.28 -8.37 16 5 C 0.59 7.41 7.78 -12.54 -0.10 7.31 16 6 O -0.54 -8.38 16.65 5.26 0.09 -8.29 16 7 C -0.24 -2.44 6.31 -103.28 -0.65 -3.10 16 8 C -0.16 -1.48 11.01 -37.46 -0.41 -1.89 16 9 C -0.04 -0.29 12.03 29.30 0.35 0.07 16 10 O -0.17 -1.40 10.52 7.65 0.08 -1.32 16 11 C 0.03 0.21 11.61 30.08 0.35 0.56 16 12 C 0.51 7.49 7.22 -10.98 -0.08 7.41 16 13 O -0.54 -9.72 15.84 5.56 0.09 -9.63 16 14 N -0.72 -10.88 5.45 -60.30 -0.33 -11.21 16 15 C 0.13 2.50 5.61 -4.05 -0.02 2.48 16 16 C -0.02 -0.50 4.16 -27.88 -0.12 -0.61 16 17 C -0.52 -14.35 9.66 -34.44 -0.33 -14.69 16 18 H 0.08 2.25 7.99 -52.49 -0.42 1.83 16 19 C 0.07 1.95 5.47 -17.82 -0.10 1.86 16 20 N -0.90 -26.96 13.96 55.43 0.77 -26.18 16 21 Si 0.88 20.69 27.47 -169.99 -4.67 16.02 16 22 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 23 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 24 H -0.27 -5.85 6.54 56.52 0.37 -5.48 16 25 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 26 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.08 0.66 7.56 -51.93 -0.39 0.27 16 28 H 0.41 4.17 6.76 -40.82 -0.28 3.89 16 29 H 0.16 1.31 8.06 -52.49 -0.42 0.89 16 30 H 0.21 0.57 8.06 -52.49 -0.42 0.15 16 31 H 0.21 1.04 7.47 -52.49 -0.39 0.65 16 32 H 0.40 5.01 7.89 -40.82 -0.32 4.69 16 33 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 34 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 35 H 0.02 0.49 7.20 -51.93 -0.37 0.12 16 36 H 0.02 0.39 7.57 -51.93 -0.39 0.00 16 37 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 325.82 15.07 4.91 4.91 Total: -1.00 -34.56 325.82 -4.97 -39.53 By element: Atomic # 1 Polarization: 9.78 SS G_CDS: -4.67 Total: 5.11 kcal Atomic # 6 Polarization: 0.39 SS G_CDS: -0.97 Total: -0.57 kcal Atomic # 7 Polarization: -45.93 SS G_CDS: 0.17 Total: -45.76 kcal Atomic # 8 Polarization: -19.49 SS G_CDS: 0.26 Total: -19.24 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -4.67 Total: 16.02 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -34.56 -4.97 -39.53 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273083905.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.399 kcal (2) G-P(sol) polarization free energy of solvation -34.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.526 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds