Wall clock time and date at job start Tue Mar 31 2020 02:03:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 N 1.46500 * 109.47473 * 120.00128 * 2 1 3 5 5 C 1.34768 * 120.00056 * 275.00296 * 4 2 1 6 6 O 1.21618 * 120.00260 * 359.97438 * 5 4 2 7 7 C 1.47382 * 120.00259 * 179.97438 * 5 4 2 8 8 C 1.47014 * 127.19660 * 179.97438 * 7 5 4 9 9 C 1.34175 * 105.95829 * 179.97438 * 8 7 5 10 10 O 1.34213 * 109.12089 * 359.97438 * 9 8 7 11 11 C 1.33657 * 110.91032 * 359.76673 * 10 9 8 12 12 C 1.50706 * 109.47238 * 240.00493 * 2 1 3 13 13 O 1.21282 * 119.99865 * 240.00203 * 12 2 1 14 14 N 1.34774 * 120.00164 * 59.99708 * 12 2 1 15 15 C 1.46496 * 120.00339 * 180.02562 * 14 12 2 16 16 C 1.52992 * 109.47337 * 179.97438 * 15 14 12 17 17 C 1.50706 * 109.47161 * 179.97438 * 16 15 14 18 18 H 1.07998 * 119.99629 * 0.02562 * 17 16 15 19 19 C 1.37875 * 119.99955 * 179.97438 * 17 16 15 20 20 N 1.31514 * 119.99765 * 179.97438 * 19 17 16 21 21 Si 1.86803 * 120.00134 * 0.02562 * 19 17 16 22 22 H 1.48506 * 109.46844 * 89.99757 * 21 19 17 23 23 H 1.48498 * 109.46893 * 209.99585 * 21 19 17 24 24 H 1.48497 * 109.47080 * 329.99877 * 21 19 17 25 25 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 26 26 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 28 28 H 0.97001 * 119.99547 * 95.00125 * 4 2 1 29 29 H 1.08001 * 127.02508 * 359.97438 * 8 7 5 30 30 H 1.07993 * 125.44264 * 180.02562 * 9 8 7 31 31 H 1.08001 * 125.80038 * 180.26620 * 11 10 9 32 32 H 0.97005 * 119.99795 * 359.97438 * 14 12 2 33 33 H 1.08996 * 109.46956 * 300.00500 * 15 14 12 34 34 H 1.09001 * 109.47062 * 59.99678 * 15 14 12 35 35 H 1.08996 * 109.47747 * 300.00310 * 16 15 14 36 36 H 1.08998 * 109.47315 * 60.00427 * 16 15 14 37 37 H 0.97010 * 119.99963 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.1471 -0.0184 2.3570 6 8 1.8582 1.1618 2.4117 7 6 2.6379 -0.7132 3.5605 8 6 2.8383 -0.1388 4.8989 9 6 3.2939 -1.1409 5.6660 10 8 3.3860 -2.2556 4.9241 11 6 2.9949 -2.0255 3.6669 12 6 2.0324 -0.7103 -1.2306 13 8 2.7296 -1.6964 -1.1193 14 7 1.7068 -0.2498 -2.4546 15 6 2.1946 -0.9406 -3.6508 16 6 1.6842 -0.2196 -4.9000 17 6 2.1866 -0.9299 -6.1305 18 1 2.8075 -1.8080 -6.0314 19 6 1.8527 -0.4594 -7.3827 20 7 2.2916 -1.0789 -8.4566 21 14 0.7782 1.0590 -7.5540 22 1 1.6364 2.2701 -7.6002 23 1 -0.0143 0.9658 -8.8065 24 1 -0.1417 1.1482 -6.3917 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5139 -0.8900 28 1 2.2491 -1.6318 1.1525 29 1 2.6561 0.8815 5.2027 30 1 3.5455 -1.0633 6.7133 31 1 2.9685 -2.7542 2.8702 32 1 1.1487 0.5386 -2.5436 33 1 3.2846 -0.9411 -3.6510 34 1 1.8310 -1.9682 -3.6507 35 1 0.5942 -0.2195 -4.8996 36 1 2.0475 0.8080 -4.9004 37 1 2.0570 -0.7476 -9.3376 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273083905.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:03:33 Heat of formation + Delta-G solvation = -92.710406 kcal Electronic energy + Delta-G solvation = -20797.549464 eV Core-core repulsion = 17347.340413 eV Total energy + Delta-G solvation = -3450.209051 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -43.48923 -41.41486 -40.07707 -36.80765 -36.07277 -34.85447 -33.99672 -32.63040 -31.48463 -30.27114 -27.12076 -25.80407 -24.14194 -22.64856 -22.40798 -21.44421 -21.20593 -19.71794 -18.99320 -18.00997 -17.66142 -17.12339 -16.99802 -16.65361 -16.22603 -16.13042 -15.87031 -15.57392 -15.16695 -14.78380 -14.53545 -14.49121 -13.84767 -13.72665 -13.44453 -13.34417 -13.26669 -13.03439 -12.69995 -12.21102 -12.16362 -11.75936 -11.50976 -11.29857 -10.99062 -10.86803 -10.78405 -10.33900 -10.10664 -9.75584 -8.29534 -6.36641 0.31113 1.12406 1.40500 1.42355 1.46354 1.53456 1.68713 2.06250 2.24761 2.37272 2.37805 3.05947 3.49881 3.63042 3.76971 3.96380 4.05212 4.12590 4.34003 4.43579 4.53115 4.63849 4.74196 4.75948 4.77787 4.99266 5.09031 5.16032 5.20884 5.33517 5.39502 5.41566 5.63101 5.97774 6.22045 6.37755 6.47501 6.71442 7.05062 7.11401 7.28063 8.87058 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.042702 B = 0.002778 C = 0.002659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 655.543124 B =10076.961166 C =10529.241582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.132 3.868 3 H 0.117 0.883 4 N -0.704 5.704 5 C 0.592 3.408 6 O -0.576 6.576 7 C -0.270 4.270 8 C -0.194 4.194 9 C -0.023 4.023 10 O -0.177 6.177 11 C 0.043 3.957 12 C 0.509 3.491 13 O -0.576 6.576 14 N -0.707 5.707 15 C 0.145 3.855 16 C -0.015 4.015 17 C -0.538 4.538 18 H 0.030 0.970 19 C 0.003 3.997 20 N -0.951 5.951 21 Si 0.957 3.043 22 H -0.267 1.267 23 H -0.288 1.288 24 H -0.234 1.234 25 H 0.072 0.928 26 H 0.068 0.932 27 H 0.093 0.907 28 H 0.414 0.586 29 H 0.159 0.841 30 H 0.249 0.751 31 H 0.239 0.761 32 H 0.416 0.584 33 H 0.046 0.954 34 H 0.051 0.949 35 H 0.040 0.960 36 H 0.034 0.966 37 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.533 2.165 28.190 28.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.024 3.976 3 H 0.134 0.866 4 N -0.357 5.357 5 C 0.381 3.619 6 O -0.456 6.456 7 C -0.275 4.275 8 C -0.214 4.214 9 C -0.089 4.089 10 O -0.072 6.072 11 C -0.028 4.028 12 C 0.295 3.705 13 O -0.456 6.456 14 N -0.359 5.359 15 C 0.022 3.978 16 C -0.053 4.053 17 C -0.576 4.576 18 H 0.048 0.952 19 C -0.194 4.194 20 N -0.591 5.591 21 Si 0.780 3.220 22 H -0.192 1.192 23 H -0.214 1.214 24 H -0.157 1.157 25 H 0.091 0.909 26 H 0.087 0.913 27 H 0.111 0.889 28 H 0.252 0.748 29 H 0.176 0.824 30 H 0.265 0.735 31 H 0.255 0.745 32 H 0.253 0.747 33 H 0.064 0.936 34 H 0.069 0.931 35 H 0.058 0.942 36 H 0.053 0.947 37 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -3.145 2.021 28.209 28.456 hybrid contribution -0.214 0.467 -1.046 1.165 sum -3.359 2.488 27.163 27.483 Atomic orbital electron populations 1.22121 0.90761 1.03778 1.04529 1.20780 0.97091 0.97613 0.82145 0.86560 1.45565 1.67135 1.14915 1.08054 1.17521 0.76283 0.85655 0.82394 1.90756 1.52410 1.16897 1.85582 1.21504 1.14484 0.95847 0.95643 1.22960 1.05592 1.01784 0.91041 1.24666 1.03237 0.82084 0.98875 1.83852 1.65953 1.37314 1.20043 1.25014 0.95586 0.96325 0.85891 1.20885 0.79822 0.84391 0.85398 1.90668 1.39699 1.28098 1.87127 1.45982 1.52759 1.32166 1.04981 1.21077 0.97882 0.95752 0.83130 1.19673 0.97600 0.96467 0.91550 1.21255 1.32128 1.13006 0.91218 0.95154 1.26074 0.97311 1.00856 0.95130 1.70077 1.47387 1.42838 0.98782 0.85566 0.79286 0.78499 0.78697 1.19249 1.21434 1.15678 0.90926 0.91315 0.88852 0.74834 0.82374 0.73525 0.74457 0.74743 0.93600 0.93089 0.94201 0.94726 0.92384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.72 9.38 71.98 0.68 -2.04 16 2 C 0.13 2.94 2.98 44.25 0.13 3.08 16 3 H 0.12 2.64 7.58 -2.39 -0.02 2.62 16 4 N -0.70 -15.39 4.94 -449.41 -2.22 -17.61 16 5 C 0.59 14.57 7.78 86.65 0.67 15.24 16 6 O -0.58 -17.92 16.65 -4.09 -0.07 -17.99 16 7 C -0.27 -5.39 6.31 -18.99 -0.12 -5.51 16 8 C -0.19 -3.32 11.01 23.65 0.26 -3.06 16 9 C -0.02 -0.26 12.03 66.89 0.80 0.54 16 10 O -0.18 -2.43 10.52 4.44 0.05 -2.38 16 11 C 0.04 0.60 11.61 67.39 0.78 1.38 16 12 C 0.51 14.39 7.22 87.66 0.63 15.02 16 13 O -0.58 -20.18 15.84 -3.04 -0.05 -20.23 16 14 N -0.71 -20.10 5.45 -463.08 -2.52 -22.63 16 15 C 0.15 5.52 5.61 86.38 0.48 6.00 16 16 C -0.02 -0.64 4.16 29.85 0.12 -0.52 16 17 C -0.54 -29.88 9.66 25.60 0.25 -29.63 16 18 H 0.03 1.89 7.99 -2.91 -0.02 1.87 16 19 C 0.00 0.19 5.47 84.65 0.46 0.65 16 20 N -0.95 -58.59 13.96 21.45 0.30 -58.29 16 21 Si 0.96 41.54 27.47 68.60 1.88 43.42 16 22 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 23 H -0.29 -12.53 7.11 99.48 0.71 -11.83 16 24 H -0.23 -8.89 6.54 99.48 0.65 -8.24 16 25 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 26 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 27 H 0.09 1.32 7.56 -2.38 -0.02 1.31 16 28 H 0.41 7.99 6.76 -92.71 -0.63 7.37 16 29 H 0.16 2.61 8.06 -2.91 -0.02 2.58 16 30 H 0.25 0.47 8.06 -2.91 -0.02 0.45 16 31 H 0.24 1.81 7.47 -2.91 -0.02 1.78 16 32 H 0.42 9.13 7.89 -92.70 -0.73 8.39 16 33 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 34 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 35 H 0.04 1.58 7.20 -2.39 -0.02 1.56 16 36 H 0.03 1.37 7.57 -2.39 -0.02 1.36 16 37 H 0.27 15.33 8.31 -92.70 -0.77 14.56 16 Total: -1.00 -77.06 325.82 2.23 -74.84 By element: Atomic # 1 Polarization: 20.02 SS G_CDS: -0.31 Total: 19.71 kcal Atomic # 6 Polarization: -4.00 SS G_CDS: 5.16 Total: 1.16 kcal Atomic # 7 Polarization: -94.08 SS G_CDS: -4.45 Total: -98.53 kcal Atomic # 8 Polarization: -40.54 SS G_CDS: -0.07 Total: -40.60 kcal Atomic # 14 Polarization: 41.54 SS G_CDS: 1.88 Total: 43.42 kcal Total: -77.06 2.23 -74.84 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273083905.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.872 kcal (2) G-P(sol) polarization free energy of solvation -77.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.838 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds