Wall clock time and date at job start Tue Mar 31 2020 02:03:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08998 * 109.47463 * 2 1 4 4 N 1.46502 * 109.47399 * 240.00110 * 2 1 3 5 5 C 1.34769 * 120.00003 * 85.00006 * 4 2 1 6 6 O 1.21614 * 120.00201 * 0.02562 * 5 4 2 7 7 C 1.47378 * 120.00151 * 180.02562 * 5 4 2 8 8 C 1.47020 * 127.19340 * 179.97438 * 7 5 4 9 9 C 1.34184 * 105.95357 * 179.97438 * 8 7 5 10 10 O 1.34209 * 109.12515 * 0.02562 * 9 8 7 11 11 C 1.33658 * 110.90640 * 359.97438 * 10 9 8 12 12 C 1.50704 * 109.46991 * 120.00279 * 2 1 3 13 13 O 1.21276 * 120.00291 * 119.99800 * 12 2 1 14 14 N 1.34778 * 119.99701 * 299.99988 * 12 2 1 15 15 C 1.46500 * 119.99899 * 180.02562 * 14 12 2 16 16 C 1.53001 * 109.47172 * 179.97438 * 15 14 12 17 17 C 1.50700 * 109.47029 * 179.97438 * 16 15 14 18 18 H 1.07999 * 120.00106 * 0.02562 * 17 16 15 19 19 C 1.37879 * 119.99731 * 179.97438 * 17 16 15 20 20 N 1.31510 * 120.00258 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 119.99664 * 180.02562 * 19 17 16 22 22 H 1.48495 * 109.47100 * 60.00742 * 21 19 17 23 23 H 1.48499 * 109.47016 * 180.02562 * 21 19 17 24 24 H 1.48508 * 109.47116 * 300.00349 * 21 19 17 25 25 H 1.08996 * 109.47193 * 299.99891 * 1 2 3 26 26 H 1.09009 * 109.46751 * 60.00065 * 1 2 3 27 27 H 1.09004 * 109.47167 * 179.97438 * 1 2 3 28 28 H 0.97000 * 119.99846 * 265.00668 * 4 2 1 29 29 H 1.07999 * 127.02375 * 0.22997 * 8 7 5 30 30 H 1.07998 * 125.43737 * 180.02562 * 9 8 7 31 31 H 1.08002 * 125.79551 * 180.02562 * 11 10 9 32 32 H 0.96998 * 119.99892 * 359.97438 * 14 12 2 33 33 H 1.09004 * 109.46969 * 300.00043 * 15 14 12 34 34 H 1.09002 * 109.47104 * 60.00140 * 15 14 12 35 35 H 1.08993 * 109.47052 * 300.00343 * 16 15 14 36 36 H 1.09002 * 109.46834 * 60.00167 * 16 15 14 37 37 H 0.96996 * 120.00113 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0184 -0.6906 -1.1962 5 6 2.1471 -0.0182 -2.3571 6 8 1.8583 1.1618 -2.4116 7 6 2.6379 -0.7131 -3.5606 8 6 2.8374 -0.1387 -4.8991 9 6 3.2945 -1.1405 -5.6660 10 8 3.3883 -2.2548 -4.9238 11 6 3.0022 -2.0235 -3.6652 12 6 2.0323 -0.7105 1.2305 13 8 2.7295 -1.6966 1.1192 14 7 1.7066 -0.2500 2.4546 15 6 2.1953 -0.9403 3.6507 16 6 1.6857 -0.2188 4.9000 17 6 2.1880 -0.9293 6.1304 18 1 2.8089 -1.8074 6.0313 19 6 1.8556 -0.4577 7.3827 20 7 1.0999 0.6118 7.5034 21 14 2.4788 -1.3380 8.9079 22 1 3.9637 -1.3383 8.9073 23 1 1.9841 -0.6378 10.1204 24 1 1.9834 -2.7380 8.9086 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8901 27 1 -0.3634 -1.0277 -0.0005 28 1 2.2490 -1.6318 -1.1526 29 1 2.6572 0.8821 -5.2023 30 1 3.5466 -1.0626 -6.7132 31 1 2.9823 -2.7505 -2.8668 32 1 1.1493 0.5388 2.5435 33 1 1.8324 -1.9682 3.6508 34 1 3.2854 -0.9399 3.6506 35 1 2.0490 0.8088 4.8996 36 1 0.5957 -0.2189 4.9003 37 1 0.8664 0.9438 8.3844 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273083909.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:03:36 Heat of formation + Delta-G solvation = -70.196244 kcal Electronic energy + Delta-G solvation = -20740.494942 eV Core-core repulsion = 17291.262179 eV Total energy + Delta-G solvation = -3449.232763 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.83999 -40.23235 -38.88120 -35.28711 -34.82621 -33.28563 -32.93334 -31.36662 -29.91960 -29.14949 -25.43623 -24.62607 -23.10950 -21.78168 -21.09158 -20.33850 -20.16084 -18.88133 -17.01044 -16.68283 -16.46125 -16.36228 -15.77045 -15.39076 -15.17142 -14.69274 -14.61235 -14.40695 -13.73463 -13.57083 -13.23046 -13.18304 -12.72032 -12.52627 -12.40311 -12.32968 -11.71748 -11.27095 -11.05983 -10.70478 -10.39673 -10.25219 -10.12931 -9.93188 -9.59923 -9.39669 -9.21788 -9.10550 -8.65686 -8.42805 -6.12926 -4.16325 1.05143 1.76954 2.58177 2.75583 2.80083 3.16120 3.28614 3.32874 3.35388 3.60260 4.28211 4.36645 4.38186 4.70888 4.84228 4.95622 5.06972 5.19398 5.24083 5.34258 5.49233 5.57503 5.67779 5.95464 6.00820 6.14563 6.25743 6.26218 6.61333 6.64112 6.75500 7.32098 7.45025 7.55543 7.80435 7.85237 8.03161 8.21141 8.42585 8.89168 9.48738 10.98534 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.043735 B = 0.002633 C = 0.002529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 640.065914 B =10633.328966 C =11070.745435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.124 3.876 3 H 0.115 0.885 4 N -0.707 5.707 5 C 0.590 3.410 6 O -0.537 6.537 7 C -0.235 4.235 8 C -0.164 4.164 9 C -0.043 4.043 10 O -0.174 6.174 11 C 0.026 3.974 12 C 0.504 3.496 13 O -0.550 6.550 14 N -0.713 5.713 15 C 0.121 3.879 16 C 0.012 3.988 17 C -0.524 4.524 18 H 0.059 0.941 19 C 0.059 3.941 20 N -0.893 5.893 21 Si 0.898 3.102 22 H -0.276 1.276 23 H -0.287 1.287 24 H -0.276 1.276 25 H 0.077 0.923 26 H 0.072 0.928 27 H 0.064 0.936 28 H 0.407 0.593 29 H 0.160 0.840 30 H 0.209 0.791 31 H 0.214 0.786 32 H 0.401 0.599 33 H 0.058 0.942 34 H 0.058 0.942 35 H 0.023 0.977 36 H 0.023 0.977 37 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.519 -2.763 -23.730 23.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.016 3.984 3 H 0.133 0.867 4 N -0.361 5.361 5 C 0.378 3.622 6 O -0.415 6.415 7 C -0.239 4.239 8 C -0.184 4.184 9 C -0.109 4.109 10 O -0.069 6.069 11 C -0.045 4.045 12 C 0.288 3.712 13 O -0.428 6.428 14 N -0.362 5.362 15 C -0.001 4.001 16 C -0.025 4.025 17 C -0.562 4.562 18 H 0.077 0.923 19 C -0.143 4.143 20 N -0.532 5.532 21 Si 0.725 3.275 22 H -0.201 1.201 23 H -0.212 1.212 24 H -0.201 1.201 25 H 0.095 0.905 26 H 0.091 0.909 27 H 0.083 0.917 28 H 0.244 0.756 29 H 0.178 0.822 30 H 0.226 0.774 31 H 0.230 0.770 32 H 0.235 0.765 33 H 0.077 0.923 34 H 0.076 0.924 35 H 0.042 0.958 36 H 0.042 0.958 37 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 0.830 -2.775 -23.777 23.953 hybrid contribution 0.089 -0.240 1.101 1.130 sum 0.919 -3.015 -22.676 22.894 Atomic orbital electron populations 1.22135 0.92666 1.03240 1.03744 1.20824 0.95802 0.98206 0.83571 0.86722 1.45574 1.67402 1.14659 1.08422 1.17223 0.77093 0.86064 0.81805 1.90789 1.50476 1.15318 1.84948 1.21488 1.12078 0.94608 0.95776 1.22790 1.03656 1.00943 0.90988 1.23964 1.05669 0.83415 0.97806 1.83807 1.66422 1.36801 1.19883 1.24569 0.97708 0.96831 0.85375 1.20440 0.80772 0.84935 0.85028 1.90657 1.38686 1.26754 1.86736 1.46285 1.52274 1.31750 1.05936 1.21791 0.98656 0.96322 0.83306 1.19329 0.97026 0.96102 0.90057 1.20991 1.32197 1.12642 0.90419 0.92303 1.24996 0.94967 0.95009 0.99279 1.69937 1.36497 1.22808 1.23945 0.86564 0.79276 0.79738 0.81904 1.20100 1.21219 1.20104 0.90462 0.90919 0.91701 0.75601 0.82238 0.77443 0.77007 0.76517 0.92329 0.92379 0.95844 0.95840 0.92723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.71 9.38 37.15 0.35 -1.36 16 2 C 0.12 1.57 2.98 -69.08 -0.21 1.36 16 3 H 0.12 1.48 7.58 -51.93 -0.39 1.08 16 4 N -0.71 -8.45 4.94 -56.03 -0.28 -8.73 16 5 C 0.59 7.66 7.78 -12.54 -0.10 7.56 16 6 O -0.54 -8.62 16.65 5.27 0.09 -8.53 16 7 C -0.23 -2.51 6.31 -103.28 -0.65 -3.16 16 8 C -0.16 -1.52 11.01 -37.45 -0.41 -1.93 16 9 C -0.04 -0.30 12.03 29.30 0.35 0.05 16 10 O -0.17 -1.44 10.52 7.66 0.08 -1.36 16 11 C 0.03 0.21 11.61 30.07 0.35 0.56 16 12 C 0.50 7.86 7.22 -10.98 -0.08 7.78 16 13 O -0.55 -10.11 15.84 5.56 0.09 -10.03 16 14 N -0.71 -11.60 5.45 -60.29 -0.33 -11.93 16 15 C 0.12 2.45 5.61 -4.04 -0.02 2.43 16 16 C 0.01 0.29 5.09 -27.88 -0.14 0.15 16 17 C -0.52 -14.22 9.11 -34.44 -0.31 -14.54 16 18 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 19 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 20 N -0.89 -25.74 13.29 55.43 0.74 -25.00 16 21 Si 0.90 21.09 29.54 -169.99 -5.02 16.06 16 22 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 23 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 24 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 25 H 0.08 0.75 7.56 -51.93 -0.39 0.36 16 26 H 0.07 0.79 8.14 -51.92 -0.42 0.37 16 27 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.41 4.35 6.76 -40.82 -0.28 4.07 16 29 H 0.16 1.36 8.06 -52.49 -0.42 0.94 16 30 H 0.21 0.61 8.06 -52.49 -0.42 0.19 16 31 H 0.21 1.10 7.47 -52.49 -0.39 0.70 16 32 H 0.40 5.64 7.89 -40.82 -0.32 5.32 16 33 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 34 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 35 H 0.02 0.59 8.14 -51.93 -0.42 0.16 16 36 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 LS Contribution 329.43 15.07 4.96 4.96 Total: -1.00 -33.74 329.43 -5.34 -39.09 By element: Atomic # 1 Polarization: 9.70 SS G_CDS: -4.70 Total: 5.00 kcal Atomic # 6 Polarization: 1.43 SS G_CDS: -0.97 Total: 0.45 kcal Atomic # 7 Polarization: -45.79 SS G_CDS: 0.13 Total: -45.66 kcal Atomic # 8 Polarization: -20.17 SS G_CDS: 0.26 Total: -19.91 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -33.74 -5.34 -39.09 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273083909.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.109 kcal (2) G-P(sol) polarization free energy of solvation -33.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.087 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds