Wall clock time and date at job start Tue Mar 31 2020 02:03:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08998 * 109.47463 * 2 1 4 4 N 1.46502 * 109.47399 * 240.00110 * 2 1 3 5 5 C 1.34769 * 120.00003 * 85.00006 * 4 2 1 6 6 O 1.21614 * 120.00201 * 0.02562 * 5 4 2 7 7 C 1.47378 * 120.00151 * 180.02562 * 5 4 2 8 8 C 1.47020 * 127.19340 * 179.97438 * 7 5 4 9 9 C 1.34184 * 105.95357 * 179.97438 * 8 7 5 10 10 O 1.34209 * 109.12515 * 0.02562 * 9 8 7 11 11 C 1.33658 * 110.90640 * 359.97438 * 10 9 8 12 12 C 1.50704 * 109.46991 * 120.00279 * 2 1 3 13 13 O 1.21276 * 120.00291 * 119.99800 * 12 2 1 14 14 N 1.34778 * 119.99701 * 299.99988 * 12 2 1 15 15 C 1.46500 * 119.99899 * 180.02562 * 14 12 2 16 16 C 1.53001 * 109.47172 * 179.97438 * 15 14 12 17 17 C 1.50700 * 109.47029 * 179.97438 * 16 15 14 18 18 H 1.07999 * 120.00106 * 0.02562 * 17 16 15 19 19 C 1.37879 * 119.99731 * 179.97438 * 17 16 15 20 20 N 1.31510 * 120.00258 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 119.99664 * 180.02562 * 19 17 16 22 22 H 1.48495 * 109.47100 * 60.00742 * 21 19 17 23 23 H 1.48499 * 109.47016 * 180.02562 * 21 19 17 24 24 H 1.48508 * 109.47116 * 300.00349 * 21 19 17 25 25 H 1.08996 * 109.47193 * 299.99891 * 1 2 3 26 26 H 1.09009 * 109.46751 * 60.00065 * 1 2 3 27 27 H 1.09004 * 109.47167 * 179.97438 * 1 2 3 28 28 H 0.97000 * 119.99846 * 265.00668 * 4 2 1 29 29 H 1.07999 * 127.02375 * 0.22997 * 8 7 5 30 30 H 1.07998 * 125.43737 * 180.02562 * 9 8 7 31 31 H 1.08002 * 125.79551 * 180.02562 * 11 10 9 32 32 H 0.96998 * 119.99892 * 359.97438 * 14 12 2 33 33 H 1.09004 * 109.46969 * 300.00043 * 15 14 12 34 34 H 1.09002 * 109.47104 * 60.00140 * 15 14 12 35 35 H 1.08993 * 109.47052 * 300.00343 * 16 15 14 36 36 H 1.09002 * 109.46834 * 60.00167 * 16 15 14 37 37 H 0.96996 * 120.00113 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0184 -0.6906 -1.1962 5 6 2.1471 -0.0182 -2.3571 6 8 1.8583 1.1618 -2.4116 7 6 2.6379 -0.7131 -3.5606 8 6 2.8374 -0.1387 -4.8991 9 6 3.2945 -1.1405 -5.6660 10 8 3.3883 -2.2548 -4.9238 11 6 3.0022 -2.0235 -3.6652 12 6 2.0323 -0.7105 1.2305 13 8 2.7295 -1.6966 1.1192 14 7 1.7066 -0.2500 2.4546 15 6 2.1953 -0.9403 3.6507 16 6 1.6857 -0.2188 4.9000 17 6 2.1880 -0.9293 6.1304 18 1 2.8089 -1.8074 6.0313 19 6 1.8556 -0.4577 7.3827 20 7 1.0999 0.6118 7.5034 21 14 2.4788 -1.3380 8.9079 22 1 3.9637 -1.3383 8.9073 23 1 1.9841 -0.6378 10.1204 24 1 1.9834 -2.7380 8.9086 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8901 27 1 -0.3634 -1.0277 -0.0005 28 1 2.2490 -1.6318 -1.1526 29 1 2.6572 0.8821 -5.2023 30 1 3.5466 -1.0626 -6.7132 31 1 2.9823 -2.7505 -2.8668 32 1 1.1493 0.5388 2.5435 33 1 1.8324 -1.9682 3.6508 34 1 3.2854 -0.9399 3.6506 35 1 2.0490 0.8088 4.8996 36 1 0.5957 -0.2189 4.9003 37 1 0.8664 0.9438 8.3844 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273083909.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:03:35 Heat of formation + Delta-G solvation = -95.101768 kcal Electronic energy + Delta-G solvation = -20741.574927 eV Core-core repulsion = 17291.262179 eV Total energy + Delta-G solvation = -3450.312748 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -43.48618 -41.40598 -40.06817 -36.76093 -36.06849 -34.88554 -33.99026 -32.46887 -31.21038 -30.22391 -27.01780 -25.84023 -24.23845 -22.83891 -22.40378 -21.43782 -21.20968 -19.72476 -18.54899 -17.98880 -17.64900 -17.11790 -16.96371 -16.64191 -16.45806 -16.12250 -15.84937 -15.55171 -15.08484 -14.65223 -14.48548 -14.28779 -13.84506 -13.71443 -13.43681 -13.28932 -13.20973 -12.92299 -12.71049 -12.54633 -12.22838 -11.68211 -11.47106 -11.29792 -10.96231 -10.86292 -10.59777 -10.33756 -10.07139 -9.75275 -8.23462 -6.33849 0.31410 1.12665 1.42618 1.44462 1.46777 1.52339 1.69680 2.06518 2.24843 2.34595 2.47097 3.11571 3.50455 3.63285 3.77346 3.96017 4.04569 4.12597 4.45496 4.50061 4.53666 4.63784 4.73865 4.77480 4.86172 4.99541 5.12832 5.19270 5.23637 5.33725 5.47274 5.59135 5.78774 5.97959 6.16008 6.38341 6.48839 6.79504 7.05349 7.10580 7.35505 8.88015 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.043735 B = 0.002633 C = 0.002529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 640.065914 B =10633.328966 C =11070.745435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.132 3.868 3 H 0.114 0.886 4 N -0.702 5.702 5 C 0.591 3.409 6 O -0.576 6.576 7 C -0.270 4.270 8 C -0.195 4.195 9 C -0.023 4.023 10 O -0.177 6.177 11 C 0.043 3.957 12 C 0.510 3.490 13 O -0.575 6.575 14 N -0.709 5.709 15 C 0.141 3.859 16 C 0.021 3.979 17 C -0.547 4.547 18 H 0.060 0.940 19 C 0.007 3.993 20 N -0.926 5.926 21 Si 0.964 3.036 22 H -0.269 1.269 23 H -0.283 1.283 24 H -0.267 1.267 25 H 0.088 0.912 26 H 0.072 0.928 27 H 0.069 0.931 28 H 0.414 0.586 29 H 0.158 0.842 30 H 0.249 0.751 31 H 0.240 0.760 32 H 0.412 0.588 33 H 0.054 0.946 34 H 0.048 0.952 35 H 0.007 0.993 36 H 0.011 0.989 37 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.912 -4.040 -24.640 24.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.024 3.976 3 H 0.132 0.868 4 N -0.355 5.355 5 C 0.381 3.619 6 O -0.457 6.457 7 C -0.275 4.275 8 C -0.214 4.214 9 C -0.088 4.088 10 O -0.071 6.071 11 C -0.027 4.027 12 C 0.295 3.705 13 O -0.455 6.455 14 N -0.359 5.359 15 C 0.018 3.982 16 C -0.017 4.017 17 C -0.585 4.585 18 H 0.078 0.922 19 C -0.192 4.192 20 N -0.566 5.566 21 Si 0.788 3.212 22 H -0.194 1.194 23 H -0.208 1.208 24 H -0.192 1.192 25 H 0.107 0.893 26 H 0.091 0.909 27 H 0.088 0.912 28 H 0.252 0.748 29 H 0.176 0.824 30 H 0.265 0.735 31 H 0.256 0.744 32 H 0.249 0.751 33 H 0.072 0.928 34 H 0.067 0.933 35 H 0.026 0.974 36 H 0.029 0.971 37 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 1.218 -4.064 -24.707 25.069 hybrid contribution -0.016 0.145 1.313 1.321 sum 1.203 -3.919 -23.395 23.751 Atomic orbital electron populations 1.22110 0.90919 1.03774 1.04359 1.20749 0.96999 0.97567 0.82304 0.86822 1.45546 1.67121 1.14900 1.07978 1.17548 0.76301 0.85663 0.82413 1.90758 1.52418 1.16963 1.85578 1.21494 1.14458 0.95964 0.95575 1.22963 1.05600 1.01785 0.91072 1.24666 1.03188 0.82056 0.98890 1.83851 1.66088 1.37259 1.19901 1.25013 0.95551 0.96287 0.85874 1.20849 0.79868 0.84431 0.85307 1.90644 1.39764 1.28017 1.87119 1.46069 1.52577 1.32051 1.05227 1.21279 0.97821 0.95775 0.83343 1.19148 0.96048 0.95338 0.91136 1.21442 1.32261 1.12956 0.91843 0.92158 1.25865 0.95115 0.95731 1.02509 1.70045 1.37612 1.24165 1.24763 0.85520 0.78892 0.78771 0.77999 1.19409 1.20792 1.19240 0.89296 0.90862 0.91188 0.74777 0.82431 0.73477 0.74389 0.75139 0.92812 0.93344 0.97420 0.97063 0.92575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.11 9.38 71.98 0.68 -2.44 16 2 C 0.13 3.24 2.98 44.24 0.13 3.37 16 3 H 0.11 2.88 7.58 -2.39 -0.02 2.86 16 4 N -0.70 -16.28 4.94 -449.42 -2.22 -18.50 16 5 C 0.59 15.24 7.78 86.65 0.67 15.92 16 6 O -0.58 -18.78 16.65 -4.07 -0.07 -18.85 16 7 C -0.27 -5.59 6.31 -18.99 -0.12 -5.71 16 8 C -0.19 -3.45 11.01 23.65 0.26 -3.19 16 9 C -0.02 -0.26 12.03 66.89 0.80 0.54 16 10 O -0.18 -2.47 10.52 4.48 0.05 -2.42 16 11 C 0.04 0.63 11.61 67.39 0.78 1.42 16 12 C 0.51 15.49 7.22 87.66 0.63 16.13 16 13 O -0.58 -20.70 15.84 -3.02 -0.05 -20.75 16 14 N -0.71 -22.68 5.45 -463.05 -2.52 -25.21 16 15 C 0.14 5.71 5.61 86.38 0.48 6.19 16 16 C 0.02 1.01 5.09 29.85 0.15 1.16 16 17 C -0.55 -29.76 9.11 25.60 0.23 -29.53 16 18 H 0.06 3.19 7.74 -2.91 -0.02 3.16 16 19 C 0.01 0.37 5.46 84.66 0.46 0.83 16 20 N -0.93 -53.65 13.29 21.45 0.28 -53.37 16 21 Si 0.96 42.91 29.54 68.60 2.03 44.93 16 22 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 23 H -0.28 -12.30 7.11 99.48 0.71 -11.60 16 24 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 25 H 0.09 1.59 7.56 -2.39 -0.02 1.58 16 26 H 0.07 1.52 8.14 -2.38 -0.02 1.50 16 27 H 0.07 1.36 8.14 -2.38 -0.02 1.34 16 28 H 0.41 8.37 6.76 -92.71 -0.63 7.75 16 29 H 0.16 2.72 8.06 -2.91 -0.02 2.69 16 30 H 0.25 0.55 8.06 -2.91 -0.02 0.52 16 31 H 0.24 1.88 7.47 -2.91 -0.02 1.86 16 32 H 0.41 11.36 7.89 -92.71 -0.73 10.62 16 33 H 0.05 2.23 8.14 -2.38 -0.02 2.21 16 34 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 35 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 36 H 0.01 0.56 8.14 -2.39 -0.02 0.54 16 37 H 0.27 14.53 8.31 -92.71 -0.77 13.76 16 Total: -1.00 -72.40 329.43 2.42 -69.98 By element: Atomic # 1 Polarization: 19.74 SS G_CDS: -0.25 Total: 19.49 kcal Atomic # 6 Polarization: -0.48 SS G_CDS: 5.17 Total: 4.69 kcal Atomic # 7 Polarization: -92.61 SS G_CDS: -4.46 Total: -97.07 kcal Atomic # 8 Polarization: -41.95 SS G_CDS: -0.07 Total: -42.02 kcal Atomic # 14 Polarization: 42.91 SS G_CDS: 2.03 Total: 44.93 kcal Total: -72.40 2.42 -69.98 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273083909.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.120 kcal (2) G-P(sol) polarization free energy of solvation -72.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.982 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds