Wall clock time and date at job start Tue Mar 31 2020 02:02:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.46959 * 2 1 4 4 O 1.42901 * 109.46603 * 240.00675 * 2 1 3 5 5 C 1.50698 * 109.47136 * 120.00730 * 2 1 3 6 6 O 1.21282 * 120.00218 * 115.00153 * 5 2 1 7 7 N 1.34779 * 119.99614 * 294.99361 * 5 2 1 8 8 C 1.39582 * 119.99721 * 180.02562 * 7 5 2 9 9 N 1.32274 * 119.72874 * 0.02562 * 8 7 5 10 10 C 1.31952 * 121.69518 * 179.97438 * 9 8 7 11 11 C 1.38091 * 120.95050 * 359.97438 * 10 9 8 12 12 C 1.38778 * 119.35545 * 0.28060 * 11 10 9 13 13 C 1.38801 * 118.44438 * 359.47538 * 12 11 10 14 14 O 1.35979 * 120.49270 * 180.26740 * 13 12 11 15 15 C 1.42895 * 117.00458 * 0.25597 * 14 13 12 16 16 C 1.52997 * 109.47549 * 180.02562 * 15 14 13 17 17 C 1.50692 * 109.47225 * 179.97438 * 16 15 14 18 18 H 1.07994 * 120.00474 * 0.02562 * 17 16 15 19 19 C 1.37886 * 119.99805 * 179.97438 * 17 16 15 20 20 N 1.31512 * 119.99947 * 0.02562 * 19 17 16 21 21 Si 1.86805 * 119.99777 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47239 * 89.99913 * 21 19 17 23 23 H 1.48499 * 109.46793 * 209.99684 * 21 19 17 24 24 H 1.48497 * 109.46950 * 330.00114 * 21 19 17 25 25 H 1.09005 * 109.47083 * 299.99650 * 1 2 3 26 26 H 1.08996 * 109.47403 * 59.99574 * 1 2 3 27 27 H 1.08995 * 109.47536 * 179.97438 * 1 2 3 28 28 H 0.96706 * 114.00079 * 299.99087 * 4 2 1 29 29 H 0.97002 * 120.00147 * 0.02562 * 7 5 2 30 30 H 1.07999 * 119.52217 * 179.97438 * 10 9 8 31 31 H 1.08002 * 120.31819 * 179.97438 * 11 10 9 32 32 H 1.08001 * 120.77350 * 179.72907 * 12 11 10 33 33 H 1.09000 * 109.46896 * 300.00413 * 15 14 13 34 34 H 1.08997 * 109.46720 * 59.99627 * 15 14 13 35 35 H 1.09001 * 109.46778 * 300.00346 * 16 15 14 36 36 H 1.09006 * 109.46958 * 59.99937 * 16 15 14 37 37 H 0.97005 * 119.99620 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0062 -0.6735 -1.1669 5 6 2.0323 -0.7106 1.2304 6 8 2.6530 -1.7468 1.1213 7 7 1.7919 -0.1943 2.4519 8 6 2.2577 -0.8522 3.5915 9 7 2.9348 -1.9816 3.4663 10 6 3.3933 -2.6351 4.5169 11 6 3.1821 -2.1605 5.7963 12 6 2.4720 -0.9817 5.9761 13 6 2.0062 -0.3127 4.8528 14 8 1.3105 0.8487 4.9804 15 6 1.0957 1.3339 6.3072 16 6 0.3006 2.6398 6.2503 17 6 0.0736 3.1511 7.6495 18 1 0.4583 2.6000 8.4949 19 6 -0.6244 4.3231 7.8505 20 7 -1.0924 4.9945 6.8210 21 14 -0.9052 4.9573 9.5850 22 1 0.2164 5.8497 9.9734 23 1 -2.1810 5.7156 9.6342 24 1 -0.9740 3.8107 10.5261 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0276 -0.0005 28 1 1.7209 -1.5952 -1.2331 29 1 1.2953 0.6343 2.5392 30 1 3.9415 -3.5546 4.3740 31 1 3.5616 -2.7039 6.6490 32 1 2.2898 -0.5920 6.9667 33 1 0.5365 0.5931 6.8788 34 1 2.0570 1.5139 6.7882 35 1 0.8594 3.3807 5.6785 36 1 -0.6608 2.4592 5.7694 37 1 -1.5837 5.8189 6.9624 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000276400481.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:02:16 Heat of formation + Delta-G solvation = -87.216958 kcal Electronic energy + Delta-G solvation = -21350.450944 eV Core-core repulsion = 17900.480108 eV Total energy + Delta-G solvation = -3449.970837 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.99062 -39.62004 -37.87972 -36.70757 -34.89751 -33.50870 -31.88224 -31.29998 -30.38592 -28.98627 -25.50962 -25.02829 -23.32871 -22.74751 -21.12411 -20.37579 -18.73444 -17.88149 -17.45929 -16.49483 -16.16811 -15.96804 -15.77048 -15.50328 -14.86393 -14.63430 -14.52295 -14.23622 -13.95692 -13.53171 -12.92429 -12.71982 -12.43371 -12.36380 -12.07384 -11.99077 -11.92929 -11.10147 -11.01770 -10.99574 -10.76336 -10.70998 -10.08885 -10.07901 -9.79563 -9.44011 -9.26907 -9.02589 -8.54953 -7.72149 -6.20729 -4.25766 1.14530 1.40229 2.57416 2.78005 3.20808 3.26907 3.29085 3.48290 3.94923 4.04650 4.26084 4.31618 4.67009 4.72375 4.80175 4.90963 5.05147 5.16349 5.22041 5.36418 5.42074 5.52014 5.79612 5.81872 5.86061 6.01319 6.13799 6.29145 6.49975 6.56874 7.12093 7.29509 7.32307 7.48941 7.59858 7.81141 7.97674 8.11303 8.27025 8.79368 9.39416 10.90654 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.018396 B = 0.003926 C = 0.003274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1521.692662 B = 7130.382384 C = 8550.382229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.092 3.908 3 H 0.128 0.872 4 O -0.539 6.539 5 C 0.475 3.525 6 O -0.476 6.476 7 N -0.648 5.648 8 C 0.325 3.675 9 N -0.445 5.445 10 C 0.074 3.926 11 C -0.158 4.158 12 C -0.148 4.148 13 C 0.068 3.932 14 O -0.316 6.316 15 C 0.066 3.934 16 C 0.027 3.973 17 C -0.529 4.529 18 H 0.058 0.942 19 C 0.062 3.938 20 N -0.889 5.889 21 Si 0.899 3.101 22 H -0.279 1.279 23 H -0.284 1.284 24 H -0.273 1.273 25 H 0.077 0.923 26 H 0.079 0.921 27 H 0.065 0.935 28 H 0.384 0.616 29 H 0.425 0.575 30 H 0.157 0.843 31 H 0.135 0.865 32 H 0.146 0.854 33 H 0.053 0.947 34 H 0.053 0.947 35 H 0.028 0.972 36 H 0.028 0.972 37 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.372 -11.375 -8.211 14.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C 0.029 3.971 3 H 0.146 0.854 4 O -0.344 6.344 5 C 0.260 3.740 6 O -0.345 6.345 7 N -0.298 5.298 8 C 0.093 3.907 9 N -0.160 5.160 10 C -0.082 4.082 11 C -0.180 4.180 12 C -0.175 4.175 13 C 0.017 3.983 14 O -0.229 6.229 15 C -0.008 4.008 16 C -0.010 4.010 17 C -0.568 4.568 18 H 0.077 0.923 19 C -0.140 4.140 20 N -0.526 5.526 21 Si 0.726 3.274 22 H -0.204 1.204 23 H -0.210 1.210 24 H -0.197 1.197 25 H 0.096 0.904 26 H 0.098 0.902 27 H 0.084 0.916 28 H 0.232 0.768 29 H 0.263 0.737 30 H 0.174 0.826 31 H 0.153 0.847 32 H 0.163 0.837 33 H 0.071 0.929 34 H 0.071 0.929 35 H 0.047 0.953 36 H 0.047 0.953 37 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 5.031 -11.568 -9.546 15.820 hybrid contribution -0.801 0.631 2.397 2.605 sum 4.230 -10.938 -7.150 13.735 Atomic orbital electron populations 1.22479 0.93663 1.03674 1.04340 1.21833 0.94695 0.97383 0.83163 0.85439 1.86597 1.77595 1.29913 1.40291 1.21887 0.80689 0.86527 0.84935 1.90801 1.36285 1.21875 1.85577 1.43532 1.55224 1.27222 1.03835 1.17833 0.97525 0.91658 0.83728 1.67606 1.09558 1.05198 1.33596 1.22418 0.99037 0.99490 0.87283 1.21906 1.00450 0.96794 0.98811 1.21624 1.00521 0.96715 0.98617 1.19601 0.96470 0.89315 0.92923 1.86094 1.68478 1.34123 1.34155 1.23407 1.00039 0.98550 0.78816 1.19126 0.95158 0.88583 0.98169 1.20943 1.36227 1.08024 0.91563 0.92337 1.24976 0.95230 0.96467 0.97361 1.69960 1.36434 1.16312 1.29932 0.86483 0.77790 0.79026 0.84084 1.20447 1.20994 1.19738 0.90410 0.90196 0.91613 0.76756 0.73742 0.82586 0.84727 0.83679 0.92920 0.92910 0.95335 0.95343 0.92621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.48 9.49 37.16 0.35 -1.13 16 2 C 0.09 0.93 4.00 -27.89 -0.11 0.82 16 3 H 0.13 1.11 8.14 -51.93 -0.42 0.69 16 4 O -0.54 -5.98 12.99 -55.09 -0.72 -6.70 16 5 C 0.47 6.55 7.13 -10.99 -0.08 6.47 16 6 O -0.48 -8.23 14.58 -14.30 -0.21 -8.44 16 7 N -0.65 -9.11 5.35 -11.29 -0.06 -9.17 16 8 C 0.33 5.30 7.45 -154.43 -1.15 4.15 16 9 N -0.44 -7.38 7.87 -12.22 -0.10 -7.47 16 10 C 0.07 1.00 11.17 -17.55 -0.20 0.80 16 11 C -0.16 -1.94 10.10 -39.44 -0.40 -2.34 16 12 C -0.15 -2.12 9.14 -39.17 -0.36 -2.47 16 13 C 0.07 1.12 6.72 -38.92 -0.26 0.85 16 14 O -0.32 -5.65 9.38 -19.67 -0.18 -5.84 16 15 C 0.07 1.27 4.70 37.16 0.17 1.44 16 16 C 0.03 0.65 5.34 -27.89 -0.15 0.50 16 17 C -0.53 -13.95 9.11 -34.44 -0.31 -14.27 16 18 H 0.06 1.47 7.74 -52.49 -0.41 1.07 16 19 C 0.06 1.68 5.46 -17.82 -0.10 1.59 16 20 N -0.89 -25.21 13.29 55.43 0.74 -24.48 16 21 Si 0.90 20.43 29.54 -169.99 -5.02 15.41 16 22 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 23 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 24 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 25 H 0.08 0.61 7.92 -51.93 -0.41 0.20 16 26 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.38 3.33 8.79 45.56 0.40 3.73 16 29 H 0.42 5.19 7.83 -40.82 -0.32 4.87 16 30 H 0.16 1.64 8.06 -52.49 -0.42 1.21 16 31 H 0.13 1.21 8.06 -52.49 -0.42 0.79 16 32 H 0.15 1.91 6.44 -52.49 -0.34 1.58 16 33 H 0.05 0.97 7.69 -51.93 -0.40 0.57 16 34 H 0.05 0.97 7.71 -51.93 -0.40 0.57 16 35 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 37 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 LS Contribution 323.39 15.07 4.87 4.87 Total: -1.00 -32.85 323.39 -7.23 -40.09 By element: Atomic # 1 Polarization: 9.28 SS G_CDS: -3.97 Total: 5.31 kcal Atomic # 6 Polarization: -1.00 SS G_CDS: -2.59 Total: -3.58 kcal Atomic # 7 Polarization: -41.70 SS G_CDS: 0.58 Total: -41.12 kcal Atomic # 8 Polarization: -19.87 SS G_CDS: -1.11 Total: -20.98 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -5.02 Total: 15.41 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -32.85 -7.23 -40.09 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000276400481.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.130 kcal (2) G-P(sol) polarization free energy of solvation -32.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.087 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds