Wall clock time and date at job start Tue Mar 31 2020 02:02:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.46959 * 2 1 4 4 O 1.42901 * 109.46603 * 240.00675 * 2 1 3 5 5 C 1.50698 * 109.47136 * 120.00730 * 2 1 3 6 6 O 1.21282 * 120.00218 * 115.00153 * 5 2 1 7 7 N 1.34779 * 119.99614 * 294.99361 * 5 2 1 8 8 C 1.39582 * 119.99721 * 180.02562 * 7 5 2 9 9 N 1.32274 * 119.72874 * 0.02562 * 8 7 5 10 10 C 1.31952 * 121.69518 * 179.97438 * 9 8 7 11 11 C 1.38091 * 120.95050 * 359.97438 * 10 9 8 12 12 C 1.38778 * 119.35545 * 0.28060 * 11 10 9 13 13 C 1.38801 * 118.44438 * 359.47538 * 12 11 10 14 14 O 1.35979 * 120.49270 * 180.26740 * 13 12 11 15 15 C 1.42895 * 117.00458 * 0.25597 * 14 13 12 16 16 C 1.52997 * 109.47549 * 180.02562 * 15 14 13 17 17 C 1.50692 * 109.47225 * 179.97438 * 16 15 14 18 18 H 1.07994 * 120.00474 * 0.02562 * 17 16 15 19 19 C 1.37886 * 119.99805 * 179.97438 * 17 16 15 20 20 N 1.31512 * 119.99947 * 0.02562 * 19 17 16 21 21 Si 1.86805 * 119.99777 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47239 * 89.99913 * 21 19 17 23 23 H 1.48499 * 109.46793 * 209.99684 * 21 19 17 24 24 H 1.48497 * 109.46950 * 330.00114 * 21 19 17 25 25 H 1.09005 * 109.47083 * 299.99650 * 1 2 3 26 26 H 1.08996 * 109.47403 * 59.99574 * 1 2 3 27 27 H 1.08995 * 109.47536 * 179.97438 * 1 2 3 28 28 H 0.96706 * 114.00079 * 299.99087 * 4 2 1 29 29 H 0.97002 * 120.00147 * 0.02562 * 7 5 2 30 30 H 1.07999 * 119.52217 * 179.97438 * 10 9 8 31 31 H 1.08002 * 120.31819 * 179.97438 * 11 10 9 32 32 H 1.08001 * 120.77350 * 179.72907 * 12 11 10 33 33 H 1.09000 * 109.46896 * 300.00413 * 15 14 13 34 34 H 1.08997 * 109.46720 * 59.99627 * 15 14 13 35 35 H 1.09001 * 109.46778 * 300.00346 * 16 15 14 36 36 H 1.09006 * 109.46958 * 59.99937 * 16 15 14 37 37 H 0.97005 * 119.99620 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0062 -0.6735 -1.1669 5 6 2.0323 -0.7106 1.2304 6 8 2.6530 -1.7468 1.1213 7 7 1.7919 -0.1943 2.4519 8 6 2.2577 -0.8522 3.5915 9 7 2.9348 -1.9816 3.4663 10 6 3.3933 -2.6351 4.5169 11 6 3.1821 -2.1605 5.7963 12 6 2.4720 -0.9817 5.9761 13 6 2.0062 -0.3127 4.8528 14 8 1.3105 0.8487 4.9804 15 6 1.0957 1.3339 6.3072 16 6 0.3006 2.6398 6.2503 17 6 0.0736 3.1511 7.6495 18 1 0.4583 2.6000 8.4949 19 6 -0.6244 4.3231 7.8505 20 7 -1.0924 4.9945 6.8210 21 14 -0.9052 4.9573 9.5850 22 1 0.2164 5.8497 9.9734 23 1 -2.1810 5.7156 9.6342 24 1 -0.9740 3.8107 10.5261 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0276 -0.0005 28 1 1.7209 -1.5952 -1.2331 29 1 1.2953 0.6343 2.5392 30 1 3.9415 -3.5546 4.3740 31 1 3.5616 -2.7039 6.6490 32 1 2.2898 -0.5920 6.9667 33 1 0.5365 0.5931 6.8788 34 1 2.0570 1.5139 6.7882 35 1 0.8594 3.3807 5.6785 36 1 -0.6608 2.4592 5.7694 37 1 -1.5837 5.8189 6.9624 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000276400481.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:02:15 Heat of formation + Delta-G solvation = -110.274756 kcal Electronic energy + Delta-G solvation = -21351.450805 eV Core-core repulsion = 17900.480108 eV Total energy + Delta-G solvation = -3450.970698 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.12128 -40.73118 -39.16733 -37.62637 -36.04195 -35.44529 -32.98289 -32.58013 -31.76326 -30.16068 -27.17221 -26.05069 -24.65232 -23.83850 -22.70478 -21.48910 -19.86855 -19.15334 -18.63287 -18.04952 -17.51091 -17.19759 -16.88510 -16.60755 -16.44511 -15.90196 -15.59877 -15.27091 -15.12282 -14.73164 -14.35344 -14.17904 -13.66045 -13.45516 -13.31597 -13.14350 -12.84017 -12.77185 -12.74464 -12.44203 -11.93537 -11.80066 -11.71553 -11.62482 -11.41607 -11.08654 -10.60092 -10.43251 -10.13808 -8.89261 -8.25107 -6.37419 0.04892 0.26630 1.43524 1.44090 1.52287 1.54999 1.75379 2.09873 2.44675 2.84539 3.10482 3.20324 3.32461 3.64462 3.84175 3.92876 4.02071 4.07615 4.12747 4.29580 4.33089 4.44820 4.72310 4.74940 4.80777 4.94553 5.11494 5.15693 5.22751 5.31331 5.51431 5.51535 5.73561 6.08267 6.11254 6.30975 6.54302 6.77396 6.87535 7.19586 7.32711 8.87367 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.018396 B = 0.003926 C = 0.003274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1521.692662 B = 7130.382384 C = 8550.382229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.100 3.900 3 H 0.144 0.856 4 O -0.551 6.551 5 C 0.473 3.527 6 O -0.516 6.516 7 N -0.647 5.647 8 C 0.306 3.694 9 N -0.475 5.475 10 C 0.072 3.928 11 C -0.143 4.143 12 C -0.149 4.149 13 C 0.043 3.957 14 O -0.327 6.327 15 C 0.083 3.917 16 C 0.030 3.970 17 C -0.546 4.546 18 H 0.070 0.930 19 C 0.006 3.994 20 N -0.928 5.928 21 Si 0.969 3.031 22 H -0.273 1.273 23 H -0.284 1.284 24 H -0.260 1.260 25 H 0.079 0.921 26 H 0.095 0.905 27 H 0.064 0.936 28 H 0.392 0.608 29 H 0.430 0.570 30 H 0.186 0.814 31 H 0.176 0.824 32 H 0.158 0.842 33 H 0.064 0.936 34 H 0.063 0.937 35 H 0.002 0.998 36 H 0.003 0.997 37 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.854 -12.293 -6.789 14.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.037 3.963 3 H 0.161 0.839 4 O -0.357 6.357 5 C 0.260 3.740 6 O -0.388 6.388 7 N -0.297 5.297 8 C 0.075 3.925 9 N -0.190 5.190 10 C -0.085 4.085 11 C -0.164 4.164 12 C -0.176 4.176 13 C -0.007 4.007 14 O -0.241 6.241 15 C 0.009 3.991 16 C -0.007 4.007 17 C -0.583 4.583 18 H 0.088 0.912 19 C -0.193 4.193 20 N -0.567 5.567 21 Si 0.793 3.207 22 H -0.198 1.198 23 H -0.209 1.209 24 H -0.184 1.184 25 H 0.098 0.902 26 H 0.114 0.886 27 H 0.084 0.916 28 H 0.243 0.757 29 H 0.269 0.731 30 H 0.203 0.797 31 H 0.193 0.807 32 H 0.175 0.825 33 H 0.082 0.918 34 H 0.082 0.918 35 H 0.021 0.979 36 H 0.022 0.978 37 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 5.510 -12.492 -8.129 15.890 hybrid contribution -0.885 0.804 1.919 2.261 sum 4.625 -11.687 -6.211 14.020 Atomic orbital electron populations 1.22444 0.91858 1.03959 1.05198 1.21940 0.95910 0.97326 0.81085 0.83905 1.86570 1.78040 1.30767 1.40361 1.22605 0.79710 0.86069 0.85599 1.90765 1.38198 1.23696 1.86132 1.43626 1.55003 1.27296 1.03753 1.18061 0.98089 0.92060 0.84326 1.67665 1.10451 1.05679 1.35254 1.23060 0.98142 0.99991 0.87292 1.22290 0.98690 0.95766 0.99658 1.21925 1.00071 0.97169 0.98433 1.19748 0.97862 0.89262 0.93867 1.86020 1.69556 1.35436 1.33058 1.22964 0.99847 0.96485 0.79811 1.18944 0.94323 0.90597 0.96873 1.21403 1.35910 1.08296 0.92738 0.91159 1.25930 0.94968 0.96828 1.01580 1.70093 1.37409 1.16870 1.32344 0.85384 0.77617 0.78642 0.79041 1.19808 1.20922 1.18394 0.90218 0.88593 0.91649 0.75744 0.73123 0.79716 0.80663 0.82491 0.91771 0.91841 0.97941 0.97842 0.92534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.70 9.49 71.98 0.68 -2.02 16 2 C 0.10 1.98 4.00 29.85 0.12 2.10 16 3 H 0.14 2.37 8.14 -2.38 -0.02 2.35 16 4 O -0.55 -11.94 12.99 -129.99 -1.69 -13.63 16 5 C 0.47 13.18 7.13 87.66 0.63 13.81 16 6 O -0.52 -18.11 14.58 15.95 0.23 -17.88 16 7 N -0.65 -18.48 5.35 -308.02 -1.65 -20.13 16 8 C 0.31 9.99 7.45 132.98 0.99 10.98 16 9 N -0.48 -15.49 7.87 -192.58 -1.52 -17.00 16 10 C 0.07 1.78 11.17 84.64 0.95 2.72 16 11 C -0.14 -3.06 10.10 22.36 0.23 -2.84 16 12 C -0.15 -3.96 9.14 22.53 0.21 -3.75 16 13 C 0.04 1.39 6.72 22.70 0.15 1.54 16 14 O -0.33 -11.79 9.38 -93.31 -0.88 -12.67 16 15 C 0.08 3.17 4.70 71.98 0.34 3.51 16 16 C 0.03 1.48 5.34 29.84 0.16 1.64 16 17 C -0.55 -28.70 9.11 25.60 0.23 -28.47 16 18 H 0.07 3.44 7.74 -2.91 -0.02 3.42 16 19 C 0.01 0.32 5.46 84.66 0.46 0.78 16 20 N -0.93 -53.54 13.29 21.45 0.28 -53.25 16 21 Si 0.97 41.44 29.54 68.60 2.03 43.46 16 22 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 23 H -0.28 -12.00 7.11 99.48 0.71 -11.29 16 24 H -0.26 -10.49 7.11 99.48 0.71 -9.79 16 25 H 0.08 1.20 7.92 -2.38 -0.02 1.18 16 26 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 27 H 0.06 1.00 8.14 -2.39 -0.02 0.99 16 28 H 0.39 6.73 8.79 -74.05 -0.65 6.08 16 29 H 0.43 10.83 7.83 -92.71 -0.73 10.10 16 30 H 0.19 3.32 8.06 -2.91 -0.02 3.30 16 31 H 0.18 2.29 8.06 -2.91 -0.02 2.27 16 32 H 0.16 3.72 6.44 -2.91 -0.02 3.70 16 33 H 0.06 2.28 7.69 -2.39 -0.02 2.26 16 34 H 0.06 2.27 7.71 -2.39 -0.02 2.25 16 35 H 0.00 0.12 8.14 -2.39 -0.02 0.10 16 36 H 0.00 0.17 8.14 -2.38 -0.02 0.15 16 37 H 0.27 14.41 8.31 -92.70 -0.77 13.64 16 Total: -1.00 -71.53 323.39 1.69 -69.84 By element: Atomic # 1 Polarization: 21.53 SS G_CDS: -0.27 Total: 21.26 kcal Atomic # 6 Polarization: -5.14 SS G_CDS: 5.14 Total: 0.00 kcal Atomic # 7 Polarization: -87.50 SS G_CDS: -2.88 Total: -90.38 kcal Atomic # 8 Polarization: -41.85 SS G_CDS: -2.33 Total: -44.18 kcal Atomic # 14 Polarization: 41.44 SS G_CDS: 2.03 Total: 43.46 kcal Total: -71.53 1.69 -69.84 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000276400481.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.436 kcal (2) G-P(sol) polarization free energy of solvation -71.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.839 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds