Wall clock time and date at job start Tue Mar 31 2020 02:01:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09005 * 109.47232 * 2 1 4 4 O 1.42903 * 109.47228 * 240.00596 * 2 1 3 5 5 C 1.52999 * 109.47447 * 120.00670 * 2 1 3 6 6 N 1.46502 * 109.47189 * 185.00030 * 5 2 1 7 7 C 1.34776 * 120.00153 * 180.02562 * 6 5 2 8 8 O 1.21583 * 119.99689 * 359.97438 * 7 6 5 9 9 N 1.34776 * 120.00288 * 179.72517 * 7 6 5 10 10 C 1.39939 * 120.00340 * 175.00724 * 9 7 6 11 11 C 1.38957 * 120.03846 * 146.08367 * 10 9 7 12 12 C 1.38156 * 120.06817 * 179.69749 * 11 10 9 13 13 C 1.38173 * 120.13663 * 0.59906 * 12 11 10 14 14 C 1.38908 * 120.06874 * 359.67972 * 13 12 11 15 15 O 1.35751 * 120.03423 * 179.97438 * 14 13 12 16 16 C 1.34837 * 116.99958 * 5.92421 * 15 14 13 17 17 H 1.08003 * 119.99858 * 5.41656 * 16 15 14 18 18 C 1.38643 * 120.00215 * 185.40513 * 16 15 14 19 19 N 1.31557 * 120.00002 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 120.00043 * 180.02562 * 18 16 15 21 21 H 1.48504 * 109.47271 * 60.00770 * 20 18 16 22 22 H 1.48508 * 109.47125 * 180.02562 * 20 18 16 23 23 H 1.48497 * 109.47504 * 300.00006 * 20 18 16 24 24 C 1.38708 * 120.03369 * 326.35857 * 10 9 7 25 25 H 1.09002 * 109.46800 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.46675 * 299.99417 * 1 2 3 27 27 H 1.08997 * 109.47408 * 59.99425 * 1 2 3 28 28 H 0.96706 * 113.99654 * 59.99660 * 4 2 1 29 29 H 1.08996 * 109.47018 * 64.99896 * 5 2 1 30 30 H 1.08997 * 109.46768 * 304.99767 * 5 2 1 31 31 H 0.97003 * 119.99705 * 359.97438 * 6 5 2 32 32 H 0.96998 * 119.99677 * 355.00663 * 9 7 6 33 33 H 1.07997 * 119.96230 * 0.02562 * 11 10 9 34 34 H 1.07996 * 119.93708 * 180.30150 * 12 11 10 35 35 H 1.08004 * 119.96439 * 179.69655 * 13 12 11 36 36 H 0.97004 * 120.00551 * 180.02562 * 19 18 16 37 37 H 1.08002 * 120.07126 * 359.97438 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0064 -0.6735 -1.1669 5 6 2.0401 -0.7214 1.2491 6 7 3.5001 -0.6180 1.3108 7 6 4.1732 -1.1837 2.3322 8 8 3.5687 -1.7794 3.2027 9 7 5.5169 -1.0933 2.3861 10 6 6.2076 -1.5887 3.4978 11 6 7.4679 -2.1521 3.3393 12 6 8.1529 -2.6357 4.4372 13 6 7.5825 -2.5720 5.6941 14 6 6.3205 -2.0152 5.8583 15 8 5.7605 -1.9534 7.0934 16 6 6.5285 -2.3361 8.1335 17 1 7.5665 -2.5886 7.9743 18 6 5.9858 -2.4051 9.4075 19 7 4.7215 -2.0978 9.6014 20 14 7.0500 -2.9346 10.8485 21 1 8.1894 -1.9934 10.9946 22 1 6.2385 -2.9269 12.0923 23 1 7.5678 -4.3048 10.6045 24 6 5.6325 -1.5229 4.7583 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3632 0.5137 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 1.7209 -0.2699 -1.9980 29 1 1.7517 -1.7716 1.2054 30 1 1.6055 -0.2619 2.1369 31 1 3.9824 -0.1430 0.6160 32 1 6.0052 -0.6849 1.6542 33 1 7.9145 -2.2073 2.3575 34 1 9.1343 -3.0688 4.3123 35 1 8.1185 -2.9554 6.5498 36 1 4.3418 -2.1457 10.4928 37 1 4.6514 -1.0891 4.8835 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000277042636.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:01:41 Heat of formation + Delta-G solvation = -77.172391 kcal Electronic energy + Delta-G solvation = -21035.743264 eV Core-core repulsion = 17586.207992 eV Total energy + Delta-G solvation = -3449.535272 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.27341 -38.75929 -37.96886 -36.50819 -34.40029 -33.97330 -32.18124 -31.49258 -29.38079 -28.41407 -26.30047 -25.18644 -22.45927 -21.74587 -21.33943 -20.46666 -18.26459 -18.16110 -17.85469 -17.05583 -16.18883 -15.39630 -15.03222 -14.98387 -14.92516 -14.37061 -14.17260 -13.83819 -13.51213 -13.37119 -13.04590 -12.92511 -12.60321 -12.41932 -12.34791 -11.67265 -11.43087 -11.28444 -11.12296 -10.91804 -10.71663 -10.48095 -10.43584 -9.92845 -9.65832 -9.21816 -9.03862 -8.74485 -7.57134 -7.09608 -6.35473 -3.94755 2.17108 2.43204 2.75841 3.18523 3.19777 3.22704 3.44737 3.79786 4.02637 4.27263 4.46770 4.67378 4.71553 4.74245 5.19865 5.27370 5.29807 5.40101 5.60928 5.64631 5.69678 5.78892 5.91607 6.18233 6.30996 6.40593 6.48570 6.61436 6.92533 7.10493 7.14394 7.22489 7.32201 7.41766 7.56044 7.90043 8.09203 8.13134 8.77293 9.09302 9.81867 10.82565 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.025384 B = 0.003415 C = 0.003039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1102.810291 B = 8196.899569 C = 9211.428035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.090 3.910 3 H 0.062 0.938 4 O -0.564 6.564 5 C 0.145 3.855 6 N -0.742 5.742 7 C 0.698 3.302 8 O -0.561 6.561 9 N -0.682 5.682 10 C 0.196 3.804 11 C -0.238 4.238 12 C -0.058 4.058 13 C -0.247 4.247 14 C 0.169 3.831 15 O -0.175 6.175 16 C -0.391 4.391 17 H 0.092 0.908 18 C 0.038 3.962 19 N -0.862 5.862 20 Si 0.941 3.059 21 H -0.270 1.270 22 H -0.279 1.279 23 H -0.270 1.270 24 C -0.187 4.187 25 H 0.068 0.932 26 H 0.071 0.929 27 H 0.062 0.938 28 H 0.378 0.622 29 H 0.074 0.926 30 H 0.083 0.917 31 H 0.396 0.604 32 H 0.401 0.599 33 H 0.107 0.893 34 H 0.111 0.889 35 H 0.127 0.873 36 H 0.270 0.730 37 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.524 5.906 -19.814 20.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C 0.031 3.969 3 H 0.080 0.920 4 O -0.370 6.370 5 C 0.020 3.980 6 N -0.399 5.399 7 C 0.398 3.602 8 O -0.436 6.436 9 N -0.329 5.329 10 C 0.102 3.898 11 C -0.259 4.259 12 C -0.077 4.077 13 C -0.267 4.267 14 C 0.114 3.886 15 O -0.078 6.078 16 C -0.468 4.468 17 H 0.109 0.891 18 C -0.166 4.166 19 N -0.497 5.497 20 Si 0.766 3.234 21 H -0.195 1.195 22 H -0.203 1.203 23 H -0.195 1.195 24 C -0.209 4.209 25 H 0.088 0.912 26 H 0.090 0.910 27 H 0.081 0.919 28 H 0.225 0.775 29 H 0.092 0.908 30 H 0.101 0.899 31 H 0.230 0.770 32 H 0.235 0.765 33 H 0.126 0.874 34 H 0.129 0.871 35 H 0.145 0.855 36 H 0.080 0.920 37 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -3.287 5.070 -18.272 19.245 hybrid contribution 0.714 0.481 -0.481 0.986 sum -2.573 5.552 -18.752 19.725 Atomic orbital electron populations 1.22429 0.95236 1.03540 1.03015 1.22051 0.93688 0.95405 0.85771 0.91993 1.86599 1.76927 1.57621 1.15856 1.21249 0.79134 1.01880 0.95718 1.44949 1.07367 1.60430 1.27164 1.15959 0.81717 0.80013 0.82493 1.91032 1.67359 1.45838 1.39400 1.42481 1.05112 1.63502 1.21838 1.16942 0.91565 0.96438 0.84830 1.20234 0.96666 1.10500 0.98490 1.20483 0.98115 0.97163 0.91935 1.21167 0.97843 1.09684 0.97991 1.19117 0.91026 0.91908 0.86552 1.84010 1.39639 1.73528 1.10590 1.21286 0.93834 1.47124 0.84511 0.89104 1.25290 0.96422 0.96885 0.97977 1.70049 1.12069 1.44537 1.23018 0.85789 0.78952 0.79277 0.79415 1.19539 1.20347 1.19533 1.20043 1.02404 1.09327 0.89135 0.91245 0.90955 0.91862 0.77488 0.90753 0.89923 0.76993 0.76457 0.87444 0.87069 0.85496 0.92037 0.85236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.08 9.53 37.16 0.35 -0.73 16 2 C 0.09 0.65 3.61 -26.73 -0.10 0.55 16 3 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 4 O -0.56 -4.27 13.27 -35.23 -0.47 -4.74 16 5 C 0.14 1.60 5.34 -4.04 -0.02 1.58 16 6 N -0.74 -8.98 5.51 -65.23 -0.36 -9.34 16 7 C 0.70 11.86 8.30 -86.92 -0.72 11.14 16 8 O -0.56 -12.50 14.05 5.29 0.07 -12.42 16 9 N -0.68 -10.65 5.35 -14.24 -0.08 -10.72 16 10 C 0.20 3.87 6.27 -83.72 -0.53 3.35 16 11 C -0.24 -4.26 9.96 -39.35 -0.39 -4.65 16 12 C -0.06 -1.10 10.03 -39.64 -0.40 -1.50 16 13 C -0.25 -5.62 9.13 -39.36 -0.36 -5.98 16 14 C 0.17 4.39 6.64 -39.14 -0.26 4.13 16 15 O -0.17 -5.30 9.76 0.03 0.00 -5.30 16 16 C -0.39 -11.37 9.44 30.88 0.29 -11.08 16 17 H 0.09 2.42 5.29 -52.48 -0.28 2.14 16 18 C 0.04 1.10 5.49 -17.52 -0.10 1.00 16 19 N -0.86 -26.28 13.67 55.48 0.76 -25.52 16 20 Si 0.94 21.12 29.55 -169.99 -5.02 16.10 16 21 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 22 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 23 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 24 C -0.19 -4.51 8.59 -39.21 -0.34 -4.85 16 25 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 26 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.06 0.27 8.14 -51.93 -0.42 -0.16 16 28 H 0.38 1.20 9.08 45.56 0.41 1.61 16 29 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 30 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 31 H 0.40 3.56 8.49 -40.82 -0.35 3.21 16 32 H 0.40 4.46 8.84 -40.82 -0.36 4.10 16 33 H 0.11 1.56 8.06 -52.49 -0.42 1.14 16 34 H 0.11 1.72 8.06 -52.49 -0.42 1.30 16 35 H 0.13 2.85 5.71 -52.48 -0.30 2.55 16 36 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 37 H 0.13 3.35 6.43 -52.49 -0.34 3.01 16 LS Contribution 321.94 15.07 4.85 4.85 Total: -1.00 -37.08 321.94 -6.53 -43.60 By element: Atomic # 1 Polarization: 14.26 SS G_CDS: -3.73 Total: 10.54 kcal Atomic # 6 Polarization: -4.48 SS G_CDS: -2.56 Total: -7.04 kcal Atomic # 7 Polarization: -45.91 SS G_CDS: 0.32 Total: -45.58 kcal Atomic # 8 Polarization: -22.07 SS G_CDS: -0.39 Total: -22.46 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -37.08 -6.53 -43.60 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000277042636.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.569 kcal (2) G-P(sol) polarization free energy of solvation -37.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.603 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds