Wall clock time and date at job start Tue Mar 31 2020 02:01:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09005 * 109.47232 * 2 1 4 4 O 1.42903 * 109.47228 * 240.00596 * 2 1 3 5 5 C 1.52999 * 109.47447 * 120.00670 * 2 1 3 6 6 N 1.46502 * 109.47189 * 185.00030 * 5 2 1 7 7 C 1.34776 * 120.00153 * 180.02562 * 6 5 2 8 8 O 1.21583 * 119.99689 * 359.97438 * 7 6 5 9 9 N 1.34776 * 120.00288 * 179.72517 * 7 6 5 10 10 C 1.39939 * 120.00340 * 175.00724 * 9 7 6 11 11 C 1.38957 * 120.03846 * 146.08367 * 10 9 7 12 12 C 1.38156 * 120.06817 * 179.69749 * 11 10 9 13 13 C 1.38173 * 120.13663 * 0.59906 * 12 11 10 14 14 C 1.38908 * 120.06874 * 359.67972 * 13 12 11 15 15 O 1.35751 * 120.03423 * 179.97438 * 14 13 12 16 16 C 1.34837 * 116.99958 * 5.92421 * 15 14 13 17 17 H 1.08003 * 119.99858 * 5.41656 * 16 15 14 18 18 C 1.38643 * 120.00215 * 185.40513 * 16 15 14 19 19 N 1.31557 * 120.00002 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 120.00043 * 180.02562 * 18 16 15 21 21 H 1.48504 * 109.47271 * 60.00770 * 20 18 16 22 22 H 1.48508 * 109.47125 * 180.02562 * 20 18 16 23 23 H 1.48497 * 109.47504 * 300.00006 * 20 18 16 24 24 C 1.38708 * 120.03369 * 326.35857 * 10 9 7 25 25 H 1.09002 * 109.46800 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.46675 * 299.99417 * 1 2 3 27 27 H 1.08997 * 109.47408 * 59.99425 * 1 2 3 28 28 H 0.96706 * 113.99654 * 59.99660 * 4 2 1 29 29 H 1.08996 * 109.47018 * 64.99896 * 5 2 1 30 30 H 1.08997 * 109.46768 * 304.99767 * 5 2 1 31 31 H 0.97003 * 119.99705 * 359.97438 * 6 5 2 32 32 H 0.96998 * 119.99677 * 355.00663 * 9 7 6 33 33 H 1.07997 * 119.96230 * 0.02562 * 11 10 9 34 34 H 1.07996 * 119.93708 * 180.30150 * 12 11 10 35 35 H 1.08004 * 119.96439 * 179.69655 * 13 12 11 36 36 H 0.97004 * 120.00551 * 180.02562 * 19 18 16 37 37 H 1.08002 * 120.07126 * 359.97438 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0064 -0.6735 -1.1669 5 6 2.0401 -0.7214 1.2491 6 7 3.5001 -0.6180 1.3108 7 6 4.1732 -1.1837 2.3322 8 8 3.5687 -1.7794 3.2027 9 7 5.5169 -1.0933 2.3861 10 6 6.2076 -1.5887 3.4978 11 6 7.4679 -2.1521 3.3393 12 6 8.1529 -2.6357 4.4372 13 6 7.5825 -2.5720 5.6941 14 6 6.3205 -2.0152 5.8583 15 8 5.7605 -1.9534 7.0934 16 6 6.5285 -2.3361 8.1335 17 1 7.5665 -2.5886 7.9743 18 6 5.9858 -2.4051 9.4075 19 7 4.7215 -2.0978 9.6014 20 14 7.0500 -2.9346 10.8485 21 1 8.1894 -1.9934 10.9946 22 1 6.2385 -2.9269 12.0923 23 1 7.5678 -4.3048 10.6045 24 6 5.6325 -1.5229 4.7583 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3632 0.5137 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 1.7209 -0.2699 -1.9980 29 1 1.7517 -1.7716 1.2054 30 1 1.6055 -0.2619 2.1369 31 1 3.9824 -0.1430 0.6160 32 1 6.0052 -0.6849 1.6542 33 1 7.9145 -2.2073 2.3575 34 1 9.1343 -3.0688 4.3123 35 1 8.1185 -2.9554 6.5498 36 1 4.3418 -2.1457 10.4928 37 1 4.6514 -1.0891 4.8835 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000277042636.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:01:41 Heat of formation + Delta-G solvation = -109.014054 kcal Electronic energy + Delta-G solvation = -21037.124022 eV Core-core repulsion = 17586.207992 eV Total energy + Delta-G solvation = -3450.916030 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.71284 -40.46896 -38.86673 -38.12866 -35.59637 -35.45865 -34.24699 -32.24460 -31.09192 -29.97388 -27.44737 -27.07949 -23.96015 -23.09659 -22.50213 -21.92831 -19.97832 -19.61415 -18.88667 -18.44514 -17.55843 -16.80702 -16.65194 -16.39856 -16.10406 -15.85520 -15.55088 -15.50199 -15.30313 -14.50474 -14.26756 -14.17974 -13.89191 -13.56280 -13.43878 -13.15518 -12.92340 -12.85504 -12.62012 -12.35858 -12.14990 -11.93794 -11.60266 -11.34346 -11.06720 -10.95551 -10.74219 -10.23106 -9.29337 -8.82808 -8.44988 -6.14854 0.48122 0.72934 1.35099 1.47270 1.51734 1.53671 2.03185 2.19695 2.85562 3.09163 3.20229 3.24090 3.59960 3.83253 4.09524 4.16081 4.18062 4.39339 4.44497 4.56288 4.65591 4.72154 4.76016 4.92904 4.98131 5.04225 5.12508 5.24327 5.37007 5.40152 5.48548 5.65487 5.76251 5.96821 6.04711 6.23392 6.90307 6.97811 6.98613 7.46545 7.81717 8.78928 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.025384 B = 0.003415 C = 0.003039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1102.810291 B = 8196.899569 C = 9211.428035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.103 3.897 3 H 0.085 0.915 4 O -0.581 6.581 5 C 0.136 3.864 6 N -0.717 5.717 7 C 0.691 3.309 8 O -0.621 6.621 9 N -0.665 5.665 10 C 0.203 3.797 11 C -0.206 4.206 12 C -0.046 4.046 13 C -0.257 4.257 14 C 0.128 3.872 15 O -0.236 6.236 16 C -0.414 4.414 17 H 0.107 0.893 18 C -0.028 4.028 19 N -0.926 5.926 20 Si 1.024 2.976 21 H -0.253 1.253 22 H -0.273 1.273 23 H -0.255 1.255 24 C -0.214 4.214 25 H 0.056 0.944 26 H 0.071 0.929 27 H 0.087 0.913 28 H 0.399 0.601 29 H 0.051 0.949 30 H 0.073 0.927 31 H 0.416 0.584 32 H 0.428 0.572 33 H 0.164 0.836 34 H 0.162 0.838 35 H 0.124 0.876 36 H 0.272 0.728 37 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.218 6.079 -23.017 23.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.044 3.956 3 H 0.103 0.897 4 O -0.391 6.391 5 C 0.012 3.988 6 N -0.374 5.374 7 C 0.392 3.608 8 O -0.500 6.500 9 N -0.314 5.314 10 C 0.108 3.892 11 C -0.227 4.227 12 C -0.065 4.065 13 C -0.277 4.277 14 C 0.077 3.923 15 O -0.143 6.143 16 C -0.490 4.490 17 H 0.124 0.876 18 C -0.225 4.225 19 N -0.564 5.564 20 Si 0.843 3.157 21 H -0.178 1.178 22 H -0.198 1.198 23 H -0.180 1.180 24 C -0.236 4.236 25 H 0.075 0.925 26 H 0.090 0.910 27 H 0.106 0.894 28 H 0.250 0.750 29 H 0.069 0.931 30 H 0.091 0.909 31 H 0.254 0.746 32 H 0.267 0.733 33 H 0.181 0.819 34 H 0.179 0.821 35 H 0.142 0.858 36 H 0.081 0.919 37 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -0.512 5.299 -21.635 22.280 hybrid contribution -0.123 0.471 0.094 0.496 sum -0.635 5.770 -21.541 22.309 Atomic orbital electron populations 1.22420 0.94213 1.03125 1.04234 1.21897 0.94234 0.95442 0.84016 0.89707 1.86535 1.77234 1.58425 1.16882 1.21414 0.78325 1.01127 0.97940 1.44778 1.07798 1.58825 1.26023 1.16265 0.82031 0.79826 0.82715 1.91015 1.68604 1.48510 1.41878 1.42244 1.04774 1.63070 1.21353 1.17090 0.92351 0.95538 0.84246 1.20858 0.94834 1.06287 1.00710 1.21035 0.99765 0.95560 0.90119 1.21327 0.96592 1.09678 1.00065 1.19645 0.92942 0.93851 0.85845 1.83971 1.41577 1.76416 1.12327 1.21878 0.94736 1.47328 0.85074 0.87602 1.26729 0.98021 0.96581 1.01141 1.70226 1.14734 1.47518 1.23916 0.84581 0.77030 0.79519 0.74600 1.17751 1.19786 1.17965 1.20057 1.01573 1.10919 0.91097 0.92511 0.90982 0.89403 0.75018 0.93063 0.90884 0.74645 0.73290 0.81867 0.82084 0.85794 0.91903 0.88684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.85 9.53 71.98 0.69 -1.17 16 2 C 0.10 1.29 3.61 30.59 0.11 1.40 16 3 H 0.09 0.72 8.14 -2.38 -0.02 0.70 16 4 O -0.58 -7.28 13.27 -148.98 -1.98 -9.26 16 5 C 0.14 3.01 5.34 86.38 0.46 3.47 16 6 N -0.72 -16.52 5.51 -478.55 -2.64 -19.15 16 7 C 0.69 23.40 8.30 179.05 1.49 24.89 16 8 O -0.62 -29.10 14.05 -3.98 -0.06 -29.15 16 9 N -0.66 -19.35 5.35 -317.24 -1.70 -21.05 16 10 C 0.20 7.71 6.27 38.13 0.24 7.95 16 11 C -0.21 -6.41 9.96 22.42 0.22 -6.18 16 12 C -0.05 -1.57 10.03 22.23 0.22 -1.35 16 13 C -0.26 -11.63 9.13 22.42 0.20 -11.42 16 14 C 0.13 7.03 6.64 22.56 0.15 7.18 16 15 O -0.24 -15.50 9.76 -22.82 -0.22 -15.72 16 16 C -0.41 -25.43 9.44 67.92 0.64 -24.79 16 17 H 0.11 5.84 5.29 -2.91 -0.02 5.83 16 18 C -0.03 -1.67 5.49 84.83 0.47 -1.20 16 19 N -0.93 -60.20 13.67 21.61 0.30 -59.90 16 20 Si 1.02 44.51 29.55 68.60 2.03 46.53 16 21 H -0.25 -10.19 7.11 99.48 0.71 -9.48 16 22 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 23 H -0.26 -10.35 7.11 99.48 0.71 -9.64 16 24 C -0.21 -10.82 8.59 22.51 0.19 -10.63 16 25 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 26 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 27 H 0.09 0.49 8.14 -2.39 -0.02 0.47 16 28 H 0.40 1.23 9.08 -74.05 -0.67 0.56 16 29 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 30 H 0.07 1.75 8.14 -2.39 -0.02 1.74 16 31 H 0.42 6.28 8.49 -92.71 -0.79 5.49 16 32 H 0.43 7.74 8.84 -92.71 -0.82 6.92 16 33 H 0.16 3.42 8.06 -2.91 -0.02 3.39 16 34 H 0.16 3.93 8.06 -2.91 -0.02 3.91 16 35 H 0.12 5.59 5.71 -2.91 -0.02 5.57 16 36 H 0.27 16.17 8.31 -92.71 -0.77 15.40 16 37 H 0.09 5.38 6.43 -2.91 -0.02 5.36 16 Total: -1.00 -90.96 321.94 -0.32 -91.28 By element: Atomic # 1 Polarization: 29.41 SS G_CDS: -1.14 Total: 28.27 kcal Atomic # 6 Polarization: -16.94 SS G_CDS: 5.08 Total: -11.86 kcal Atomic # 7 Polarization: -96.07 SS G_CDS: -4.04 Total: -100.10 kcal Atomic # 8 Polarization: -51.87 SS G_CDS: -2.25 Total: -54.13 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 2.03 Total: 46.53 kcal Total: -90.96 -0.32 -91.28 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000277042636.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.732 kcal (2) G-P(sol) polarization free energy of solvation -90.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.282 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds