Wall clock time and date at job start Tue Mar 31 2020 01:25:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.46936 * 2 1 4 4 H 1.08998 * 109.47407 * 305.26357 * 3 2 1 5 5 C 1.50696 * 109.47065 * 185.26074 * 3 2 1 6 6 H 1.08002 * 120.00223 * 245.25409 * 5 3 2 7 7 C 1.37879 * 120.00214 * 64.97512 * 5 3 2 8 8 N 1.31516 * 119.99496 * 6.91629 * 7 5 3 9 9 Si 1.86796 * 120.00405 * 186.91651 * 7 5 3 10 10 H 1.48502 * 109.47168 * 93.76910 * 9 7 5 11 11 H 1.48497 * 109.47321 * 213.77232 * 9 7 5 12 12 H 1.48500 * 109.47119 * 333.77259 * 9 7 5 13 13 N 1.46501 * 109.47274 * 65.26458 * 3 2 1 14 14 C 1.34777 * 119.99836 * 275.00279 * 13 3 2 15 15 O 1.21610 * 120.00181 * 359.97438 * 14 13 3 16 16 C 1.47332 * 120.00149 * 179.97438 * 14 13 3 17 17 C 1.37941 * 125.88540 * 179.68410 * 16 14 13 18 18 C 1.39425 * 107.46975 * 179.84459 * 17 16 14 19 19 C 1.38012 * 107.44859 * 0.42115 * 18 17 16 20 20 C 1.47141 * 125.91093 * 179.71832 * 19 18 17 21 21 O 1.21542 * 120.00025 * 0.03171 * 20 19 18 22 22 O 1.34808 * 120.00227 * 180.02562 * 20 19 18 23 23 C 1.45200 * 117.00637 * 180.02562 * 22 20 19 24 24 N 1.36709 * 125.89043 * 0.02562 * 16 14 13 25 25 H 0.97004 * 125.65955 * 0.02562 * 24 16 14 26 26 H 1.08997 * 109.47467 * 300.00150 * 1 2 3 27 27 H 1.09004 * 109.46911 * 60.00041 * 1 2 3 28 28 H 1.09002 * 109.47064 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47574 * 240.00391 * 2 1 3 30 30 H 1.08998 * 109.47116 * 119.99597 * 2 1 3 31 31 H 0.97003 * 119.99827 * 179.97438 * 8 7 5 32 32 H 0.96997 * 120.00659 * 94.99523 * 13 3 2 33 33 H 1.07998 * 126.26507 * 0.02562 * 17 16 14 34 34 H 1.07995 * 126.27754 * 180.16249 * 18 17 16 35 35 H 1.08997 * 109.47793 * 180.02562 * 23 22 20 36 36 H 1.09001 * 109.47043 * 300.00308 * 23 22 20 37 37 H 1.09001 * 109.46951 * 59.99961 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6017 1.9829 -0.8391 5 6 3.5413 1.4446 -0.1303 6 1 4.1532 1.8107 0.6808 7 6 4.1339 0.9737 -1.2827 8 7 3.3915 0.6504 -2.3190 9 14 5.9912 0.7949 -1.3721 10 1 6.3735 -0.5912 -1.0007 11 1 6.4501 1.0813 -2.7550 12 1 6.6265 1.7525 -0.4315 13 7 1.6578 2.0956 1.2545 14 6 0.4410 2.6623 1.3758 15 8 -0.3396 2.6319 0.4438 16 6 0.0564 3.3186 2.6375 17 6 -1.1490 3.9392 2.8915 18 6 -1.1038 4.4227 4.1984 19 6 0.1329 4.0973 4.7174 20 6 0.6133 4.4204 6.0702 21 8 -0.1041 5.0272 6.8411 22 8 1.8492 4.0433 6.4545 23 6 2.2564 4.3954 7.8031 24 7 0.8351 3.4232 3.7563 25 1 1.7362 3.0770 3.8525 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8934 -0.5137 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 3.8085 0.3195 -3.1300 32 1 2.2804 2.1202 1.9978 33 1 -1.9775 4.0310 2.2047 34 1 -1.8904 4.9578 4.7094 35 1 3.2690 4.0343 7.9829 36 1 2.2315 5.4789 7.9189 37 1 1.5744 3.9376 8.5197 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000293447590.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:25:09 Heat of formation + Delta-G solvation = -86.174230 kcal Electronic energy + Delta-G solvation = -21563.502774 eV Core-core repulsion = 18113.577154 eV Total energy + Delta-G solvation = -3449.925621 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.55783 -40.14293 -38.66343 -36.66278 -35.19768 -32.60700 -31.46272 -31.03663 -29.94897 -27.90557 -27.00712 -24.21485 -23.05320 -21.76321 -20.67096 -19.92836 -19.57061 -19.12955 -17.63104 -16.89998 -16.66820 -16.01415 -15.44547 -15.02847 -14.54048 -14.24837 -14.08794 -13.95833 -13.45272 -13.23831 -12.89785 -12.77069 -12.64480 -12.43523 -12.11503 -11.57324 -11.41710 -11.11139 -11.09448 -10.97436 -10.87413 -10.43766 -10.30887 -9.79975 -9.37982 -9.19286 -9.19021 -8.59121 -8.45741 -8.00797 -6.22449 -4.29902 0.86584 2.12670 2.33466 2.89332 2.95932 3.19131 3.26787 3.28002 3.76866 3.82649 4.29429 4.59809 4.81494 4.89939 5.08924 5.11105 5.15891 5.23010 5.33565 5.80155 5.97766 6.08546 6.28475 6.32686 6.42953 6.52418 6.70554 6.91274 7.04398 7.12913 7.17775 7.26747 7.47781 7.49873 7.60528 7.73248 7.97250 8.44871 8.65291 8.88087 9.36401 10.85347 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.018722 B = 0.004328 C = 0.003684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1495.210415 B = 6468.043855 C = 7599.473856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.121 4.121 3 C 0.269 3.731 4 H 0.060 0.940 5 C -0.540 4.540 6 H 0.061 0.939 7 C 0.070 3.930 8 N -0.878 5.878 9 Si 0.899 3.101 10 H -0.279 1.279 11 H -0.285 1.285 12 H -0.274 1.274 13 N -0.702 5.702 14 C 0.567 3.433 15 O -0.523 6.523 16 C 0.024 3.976 17 C -0.141 4.141 18 C -0.106 4.106 19 C -0.026 4.026 20 C 0.537 3.463 21 O -0.499 6.499 22 O -0.363 6.363 23 C 0.039 3.961 24 N -0.509 5.509 25 H 0.425 0.575 26 H 0.040 0.960 27 H 0.053 0.947 28 H 0.025 0.975 29 H 0.085 0.915 30 H 0.034 0.966 31 H 0.266 0.734 32 H 0.383 0.617 33 H 0.159 0.841 34 H 0.156 0.844 35 H 0.103 0.897 36 H 0.065 0.935 37 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.827 4.734 15.395 16.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.160 4.160 3 C 0.168 3.832 4 H 0.078 0.922 5 C -0.578 4.578 6 H 0.079 0.921 7 C -0.134 4.134 8 N -0.515 5.515 9 Si 0.727 3.273 10 H -0.205 1.205 11 H -0.210 1.210 12 H -0.199 1.199 13 N -0.350 5.350 14 C 0.351 3.649 15 O -0.399 6.399 16 C -0.097 4.097 17 C -0.166 4.166 18 C -0.132 4.132 19 C -0.140 4.140 20 C 0.382 3.618 21 O -0.386 6.386 22 O -0.280 6.280 23 C -0.054 4.054 24 N -0.107 5.107 25 H 0.265 0.735 26 H 0.059 0.941 27 H 0.072 0.928 28 H 0.044 0.956 29 H 0.103 0.897 30 H 0.053 0.947 31 H 0.076 0.924 32 H 0.215 0.785 33 H 0.177 0.823 34 H 0.174 0.826 35 H 0.122 0.878 36 H 0.084 0.916 37 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -3.371 4.741 14.775 15.879 hybrid contribution 1.843 -0.254 0.585 1.950 sum -1.528 4.488 15.360 16.075 Atomic orbital electron populations 1.21863 0.97941 0.98433 1.01536 1.21869 0.93041 0.99604 1.01508 1.18901 0.94675 0.89114 0.80535 0.92244 1.21152 0.90370 1.44190 1.02135 0.92114 1.24876 0.98573 0.94913 0.95039 1.69963 1.35467 1.42776 1.03253 0.86472 0.84824 0.78482 0.77544 1.20500 1.21035 1.19864 1.46502 1.13905 1.55714 1.18833 1.17173 0.83312 0.79331 0.85119 1.90825 1.51180 1.59532 1.38384 1.21402 0.93558 1.06319 0.88400 1.21277 0.97213 1.01690 0.96391 1.21272 0.94936 1.02250 0.94749 1.19319 0.95425 1.10678 0.88605 1.19977 0.79648 0.76114 0.86014 1.90878 1.56427 1.38403 1.52911 1.86561 1.32876 1.73755 1.34787 1.23297 1.01024 1.01621 0.79488 1.42039 1.15620 1.42416 1.10608 0.73549 0.94073 0.92815 0.95568 0.89684 0.94725 0.92437 0.78526 0.82305 0.82627 0.87821 0.91648 0.91654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.97 8.52 37.16 0.32 -2.65 16 2 C -0.12 -2.78 5.49 -26.73 -0.15 -2.92 16 3 C 0.27 6.40 2.11 -69.08 -0.15 6.26 16 4 H 0.06 1.66 7.55 -51.93 -0.39 1.26 16 5 C -0.54 -13.60 8.67 -34.44 -0.30 -13.90 16 6 H 0.06 1.46 7.73 -52.49 -0.41 1.05 16 7 C 0.07 1.82 5.20 -17.82 -0.09 1.73 16 8 N -0.88 -23.96 12.00 55.43 0.67 -23.29 16 9 Si 0.90 19.93 29.54 -169.99 -5.02 14.90 16 10 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 11 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 12 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 13 N -0.70 -13.56 5.02 -56.04 -0.28 -13.84 16 14 C 0.57 10.74 6.39 -12.56 -0.08 10.65 16 15 O -0.52 -11.58 14.01 5.27 0.07 -11.51 16 16 C 0.02 0.36 7.04 -82.10 -0.58 -0.22 16 17 C -0.14 -1.97 10.60 -39.25 -0.42 -2.38 16 18 C -0.11 -1.34 10.61 -39.22 -0.42 -1.75 16 19 C -0.03 -0.34 7.07 -82.12 -0.58 -0.92 16 20 C 0.54 6.80 7.95 34.34 0.27 7.07 16 21 O -0.50 -7.17 16.67 -19.30 -0.32 -7.49 16 22 O -0.36 -3.92 10.58 -40.79 -0.43 -4.35 16 23 C 0.04 0.29 10.57 101.05 1.07 1.36 16 24 N -0.51 -6.48 6.01 -5.91 -0.04 -6.51 16 25 H 0.43 4.55 8.15 -40.82 -0.33 4.21 16 26 H 0.04 0.85 5.64 -51.93 -0.29 0.55 16 27 H 0.05 1.21 7.86 -51.93 -0.41 0.81 16 28 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.08 2.16 6.65 -51.93 -0.35 1.81 16 30 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 31 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 32 H 0.38 6.27 7.62 -40.82 -0.31 5.95 16 33 H 0.16 2.08 8.06 -52.49 -0.42 1.66 16 34 H 0.16 1.67 8.06 -52.49 -0.42 1.25 16 35 H 0.10 0.51 8.14 -51.93 -0.42 0.08 16 36 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 LS Contribution 321.68 15.07 4.85 4.85 Total: -1.00 -30.30 321.68 -6.18 -36.48 By element: Atomic # 1 Polarization: 13.02 SS G_CDS: -4.58 Total: 8.44 kcal Atomic # 6 Polarization: 3.42 SS G_CDS: -1.10 Total: 2.32 kcal Atomic # 7 Polarization: -43.99 SS G_CDS: 0.35 Total: -43.65 kcal Atomic # 8 Polarization: -22.68 SS G_CDS: -0.68 Total: -23.35 kcal Atomic # 14 Polarization: 19.93 SS G_CDS: -5.02 Total: 14.90 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -30.30 -6.18 -36.48 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293447590.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.689 kcal (2) G-P(sol) polarization free energy of solvation -30.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.485 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds