Wall clock time and date at job start Tue Mar 31 2020 01:25:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.46936 * 2 1 4 4 H 1.08998 * 109.47407 * 305.26357 * 3 2 1 5 5 C 1.50696 * 109.47065 * 185.26074 * 3 2 1 6 6 H 1.08002 * 120.00223 * 245.25409 * 5 3 2 7 7 C 1.37879 * 120.00214 * 64.97512 * 5 3 2 8 8 N 1.31516 * 119.99496 * 6.91629 * 7 5 3 9 9 Si 1.86796 * 120.00405 * 186.91651 * 7 5 3 10 10 H 1.48502 * 109.47168 * 93.76910 * 9 7 5 11 11 H 1.48497 * 109.47321 * 213.77232 * 9 7 5 12 12 H 1.48500 * 109.47119 * 333.77259 * 9 7 5 13 13 N 1.46501 * 109.47274 * 65.26458 * 3 2 1 14 14 C 1.34777 * 119.99836 * 275.00279 * 13 3 2 15 15 O 1.21610 * 120.00181 * 359.97438 * 14 13 3 16 16 C 1.47332 * 120.00149 * 179.97438 * 14 13 3 17 17 C 1.37941 * 125.88540 * 179.68410 * 16 14 13 18 18 C 1.39425 * 107.46975 * 179.84459 * 17 16 14 19 19 C 1.38012 * 107.44859 * 0.42115 * 18 17 16 20 20 C 1.47141 * 125.91093 * 179.71832 * 19 18 17 21 21 O 1.21542 * 120.00025 * 0.03171 * 20 19 18 22 22 O 1.34808 * 120.00227 * 180.02562 * 20 19 18 23 23 C 1.45200 * 117.00637 * 180.02562 * 22 20 19 24 24 N 1.36709 * 125.89043 * 0.02562 * 16 14 13 25 25 H 0.97004 * 125.65955 * 0.02562 * 24 16 14 26 26 H 1.08997 * 109.47467 * 300.00150 * 1 2 3 27 27 H 1.09004 * 109.46911 * 60.00041 * 1 2 3 28 28 H 1.09002 * 109.47064 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47574 * 240.00391 * 2 1 3 30 30 H 1.08998 * 109.47116 * 119.99597 * 2 1 3 31 31 H 0.97003 * 119.99827 * 179.97438 * 8 7 5 32 32 H 0.96997 * 120.00659 * 94.99523 * 13 3 2 33 33 H 1.07998 * 126.26507 * 0.02562 * 17 16 14 34 34 H 1.07995 * 126.27754 * 180.16249 * 18 17 16 35 35 H 1.08997 * 109.47793 * 180.02562 * 23 22 20 36 36 H 1.09001 * 109.47043 * 300.00308 * 23 22 20 37 37 H 1.09001 * 109.46951 * 59.99961 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6017 1.9829 -0.8391 5 6 3.5413 1.4446 -0.1303 6 1 4.1532 1.8107 0.6808 7 6 4.1339 0.9737 -1.2827 8 7 3.3915 0.6504 -2.3190 9 14 5.9912 0.7949 -1.3721 10 1 6.3735 -0.5912 -1.0007 11 1 6.4501 1.0813 -2.7550 12 1 6.6265 1.7525 -0.4315 13 7 1.6578 2.0956 1.2545 14 6 0.4410 2.6623 1.3758 15 8 -0.3396 2.6319 0.4438 16 6 0.0564 3.3186 2.6375 17 6 -1.1490 3.9392 2.8915 18 6 -1.1038 4.4227 4.1984 19 6 0.1329 4.0973 4.7174 20 6 0.6133 4.4204 6.0702 21 8 -0.1041 5.0272 6.8411 22 8 1.8492 4.0433 6.4545 23 6 2.2564 4.3954 7.8031 24 7 0.8351 3.4232 3.7563 25 1 1.7362 3.0770 3.8525 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8934 -0.5137 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 3.8085 0.3195 -3.1300 32 1 2.2804 2.1202 1.9978 33 1 -1.9775 4.0310 2.2047 34 1 -1.8904 4.9578 4.7094 35 1 3.2690 4.0343 7.9829 36 1 2.2315 5.4789 7.9189 37 1 1.5744 3.9376 8.5197 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000293447590.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:25:08 Heat of formation + Delta-G solvation = -106.278917 kcal Electronic energy + Delta-G solvation = -21564.374579 eV Core-core repulsion = 18113.577154 eV Total energy + Delta-G solvation = -3450.797425 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -42.65316 -41.16966 -40.16468 -37.59459 -36.97313 -34.40363 -33.10555 -32.23324 -31.12061 -29.08177 -28.42951 -25.59283 -24.66454 -23.02034 -21.91458 -21.24025 -21.09121 -20.36409 -18.91211 -18.06343 -17.59505 -17.55068 -17.20787 -16.47364 -16.16752 -15.45037 -15.28116 -15.07968 -14.74337 -14.61037 -14.22574 -13.95093 -13.81609 -13.70510 -13.44311 -13.25522 -13.08528 -12.92389 -12.64660 -12.20239 -12.10058 -11.96997 -11.88648 -11.63169 -11.09856 -11.00562 -10.55255 -10.22557 -9.85123 -9.47857 -8.19286 -6.33554 -0.23040 0.97348 1.42911 1.45323 1.46285 1.56071 1.86408 1.94672 2.28372 2.36027 2.50713 3.13179 3.69732 3.84782 4.11248 4.18960 4.28461 4.34148 4.47841 4.54861 4.69964 4.72008 4.75040 5.02858 5.06369 5.14019 5.22988 5.35747 5.41516 5.45711 5.58038 5.63948 5.74785 5.85968 6.05367 6.11009 6.53127 6.72832 6.83876 7.26896 7.42146 8.88970 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.018722 B = 0.004328 C = 0.003684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1495.210415 B = 6468.043855 C = 7599.473856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.114 4.114 3 C 0.277 3.723 4 H 0.010 0.990 5 C -0.550 4.550 6 H 0.073 0.927 7 C 0.020 3.980 8 N -0.914 5.914 9 Si 0.967 3.033 10 H -0.273 1.273 11 H -0.289 1.289 12 H -0.263 1.263 13 N -0.698 5.698 14 C 0.570 3.430 15 O -0.561 6.561 16 C 0.002 3.998 17 C -0.134 4.134 18 C -0.106 4.106 19 C -0.017 4.017 20 C 0.542 3.458 21 O -0.516 6.516 22 O -0.364 6.364 23 C 0.030 3.970 24 N -0.497 5.497 25 H 0.434 0.566 26 H 0.045 0.955 27 H 0.029 0.971 28 H 0.048 0.952 29 H 0.057 0.943 30 H 0.048 0.952 31 H 0.265 0.735 32 H 0.399 0.601 33 H 0.164 0.836 34 H 0.177 0.823 35 H 0.133 0.867 36 H 0.067 0.933 37 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.847 4.984 17.838 18.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.153 4.153 3 C 0.174 3.826 4 H 0.028 0.972 5 C -0.588 4.588 6 H 0.091 0.909 7 C -0.181 4.181 8 N -0.552 5.552 9 Si 0.792 3.208 10 H -0.199 1.199 11 H -0.215 1.215 12 H -0.187 1.187 13 N -0.347 5.347 14 C 0.356 3.644 15 O -0.441 6.441 16 C -0.118 4.118 17 C -0.160 4.160 18 C -0.131 4.131 19 C -0.132 4.132 20 C 0.388 3.612 21 O -0.405 6.405 22 O -0.281 6.281 23 C -0.062 4.062 24 N -0.095 5.095 25 H 0.275 0.725 26 H 0.064 0.936 27 H 0.048 0.952 28 H 0.067 0.933 29 H 0.075 0.925 30 H 0.067 0.933 31 H 0.074 0.926 32 H 0.234 0.766 33 H 0.181 0.819 34 H 0.194 0.806 35 H 0.151 0.849 36 H 0.086 0.914 37 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -2.356 4.992 17.266 18.127 hybrid contribution 1.524 -0.268 -0.066 1.548 sum -0.832 4.723 17.201 17.857 Atomic orbital electron populations 1.21711 0.96659 0.99540 1.00573 1.21722 0.94101 0.98822 1.00692 1.18478 0.94003 0.89239 0.80890 0.97226 1.21524 0.91179 1.43688 1.02443 0.90891 1.25724 1.03009 0.94646 0.94722 1.70109 1.37368 1.43873 1.03840 0.85419 0.79400 0.78721 0.77299 1.19877 1.21489 1.18703 1.46194 1.14722 1.55788 1.17981 1.17513 0.82433 0.78527 0.85916 1.90804 1.52153 1.60906 1.40188 1.20758 0.94762 1.08396 0.87870 1.21457 0.96760 1.00727 0.97064 1.21507 0.95464 1.02093 0.94074 1.19529 0.95432 1.09551 0.88735 1.19869 0.80089 0.75690 0.85560 1.90876 1.57098 1.39248 1.53317 1.86555 1.31626 1.73317 1.36558 1.23646 1.02640 1.02115 0.77823 1.41915 1.15843 1.42026 1.09734 0.72468 0.93587 0.95179 0.93297 0.92467 0.93332 0.92576 0.76646 0.81851 0.80588 0.84902 0.91382 0.91299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.45 8.52 71.98 0.61 -4.84 16 2 C -0.11 -5.31 5.49 30.59 0.17 -5.14 16 3 C 0.28 13.47 2.11 44.24 0.09 13.56 16 4 H 0.01 0.57 7.55 -2.39 -0.02 0.56 16 5 C -0.55 -27.73 8.67 25.60 0.22 -27.51 16 6 H 0.07 3.41 7.73 -2.91 -0.02 3.39 16 7 C 0.02 1.03 5.20 84.65 0.44 1.47 16 8 N -0.91 -51.19 12.00 21.45 0.26 -50.93 16 9 Si 0.97 40.65 29.54 68.60 2.03 42.67 16 10 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 11 H -0.29 -12.26 7.11 99.48 0.71 -11.56 16 12 H -0.26 -10.49 7.11 99.48 0.71 -9.79 16 13 N -0.70 -26.96 5.02 -449.47 -2.26 -29.21 16 14 C 0.57 21.68 6.39 86.64 0.55 22.23 16 15 O -0.56 -25.58 14.01 -4.06 -0.06 -25.64 16 16 C 0.00 0.06 7.04 40.71 0.29 0.34 16 17 C -0.13 -3.58 10.60 22.49 0.24 -3.34 16 18 C -0.11 -2.43 10.61 22.50 0.24 -2.19 16 19 C -0.02 -0.41 7.07 40.65 0.29 -0.12 16 20 C 0.54 12.41 7.95 70.16 0.56 12.97 16 21 O -0.52 -13.69 16.67 19.70 0.33 -13.36 16 22 O -0.36 -6.88 10.58 -57.20 -0.60 -7.49 16 23 C 0.03 0.37 10.57 113.37 1.20 1.57 16 24 N -0.50 -11.71 6.01 -172.60 -1.04 -12.74 16 25 H 0.43 8.37 8.15 -92.71 -0.76 7.61 16 26 H 0.05 1.90 5.64 -2.39 -0.01 1.88 16 27 H 0.03 1.39 7.86 -2.38 -0.02 1.37 16 28 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 29 H 0.06 2.98 6.65 -2.39 -0.02 2.96 16 30 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 31 H 0.27 14.11 8.31 -92.71 -0.77 13.34 16 32 H 0.40 12.65 7.62 -92.71 -0.71 11.94 16 33 H 0.16 4.14 8.06 -2.91 -0.02 4.11 16 34 H 0.18 3.29 8.06 -2.91 -0.02 3.27 16 35 H 0.13 0.83 8.14 -2.39 -0.02 0.81 16 36 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 37 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 Total: -1.00 -66.00 321.68 3.21 -62.79 By element: Atomic # 1 Polarization: 25.24 SS G_CDS: -0.34 Total: 24.90 kcal Atomic # 6 Polarization: 4.12 SS G_CDS: 4.90 Total: 9.01 kcal Atomic # 7 Polarization: -89.85 SS G_CDS: -3.04 Total: -92.89 kcal Atomic # 8 Polarization: -46.16 SS G_CDS: -0.33 Total: -46.49 kcal Atomic # 14 Polarization: 40.65 SS G_CDS: 2.03 Total: 42.67 kcal Total: -66.00 3.21 -62.79 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293447590.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.487 kcal (2) G-P(sol) polarization free energy of solvation -66.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.792 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds