Wall clock time and date at job start Tue Mar 31 2020 02:09:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46509 * 109.47146 * 2 1 4 4 C 1.36649 * 119.99587 * 92.61319 * 3 2 1 5 5 H 1.08009 * 119.99239 * 163.02998 * 4 3 2 6 6 C 1.39177 * 120.00649 * 343.30527 * 4 3 2 7 7 N 1.31289 * 119.99566 * 356.89271 * 6 4 3 8 8 Si 1.86801 * 120.00301 * 176.88953 * 6 4 3 9 9 H 1.48498 * 109.46967 * 359.97438 * 8 6 4 10 10 H 1.48496 * 109.47183 * 120.00054 * 8 6 4 11 11 H 1.48501 * 109.46838 * 240.00002 * 8 6 4 12 12 C 1.34773 * 119.99595 * 272.61356 * 3 2 1 13 13 O 1.21689 * 119.99385 * 185.53661 * 12 3 2 14 14 C 1.47098 * 120.00727 * 5.54561 * 12 3 2 15 15 C 1.38122 * 125.89694 * 7.21887 * 14 12 3 16 16 C 1.39315 * 107.49841 * 179.97438 * 15 14 12 17 17 C 1.38091 * 107.48351 * 359.97438 * 16 15 14 18 18 C 1.47034 * 125.90906 * 180.02562 * 17 16 15 19 19 O 1.21548 * 120.00033 * 359.97077 * 18 17 16 20 20 O 1.34835 * 119.99839 * 179.97438 * 18 17 16 21 21 C 1.45204 * 116.99884 * 179.97438 * 20 18 17 22 22 N 1.36783 * 125.90286 * 186.91831 * 14 12 3 23 23 C 1.46498 * 125.68178 * 359.97438 * 22 14 12 24 24 H 1.08996 * 109.47416 * 52.77410 * 1 2 3 25 25 H 1.09000 * 109.47508 * 172.77765 * 1 2 3 26 26 H 1.09003 * 109.47134 * 292.77453 * 1 2 3 27 27 H 1.09000 * 109.47194 * 240.00540 * 2 1 3 28 28 H 1.09002 * 109.47746 * 119.99753 * 2 1 3 29 29 H 0.96998 * 119.99687 * 180.02562 * 7 6 4 30 30 H 1.08000 * 126.24762 * 359.94244 * 15 14 12 31 31 H 1.07995 * 126.25789 * 180.02562 * 16 15 14 32 32 H 1.08997 * 109.47090 * 179.97438 * 21 20 18 33 33 H 1.08999 * 109.47076 * 300.00284 * 21 20 18 34 34 H 1.09001 * 109.46881 * 60.00159 * 21 20 18 35 35 H 1.08998 * 109.47060 * 93.43434 * 23 22 14 36 36 H 1.09000 * 109.47098 * 213.44080 * 23 22 14 37 37 H 1.09004 * 109.46910 * 333.43537 * 23 22 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2969 2.0074 1.1822 5 1 2.9032 2.9012 1.1901 6 6 1.8042 1.4902 2.3767 7 7 1.0217 0.4362 2.3623 8 14 2.2566 2.2956 4.0004 9 1 3.1449 3.4580 3.7457 10 1 1.0221 2.7561 4.6853 11 1 2.9627 1.3126 4.8607 12 6 2.1927 2.0343 -1.1660 13 8 2.6926 3.1437 -1.1730 14 6 1.7787 1.4061 -2.4300 15 6 1.0769 0.2230 -2.5547 16 6 0.8906 -0.0122 -3.9151 17 6 1.4808 1.0309 -4.6011 18 6 1.5216 1.1884 -6.0624 19 8 1.0046 0.3532 -6.7784 20 8 2.1325 2.2593 -6.6082 21 6 2.1347 2.3493 -8.0575 22 7 2.0172 1.8956 -3.6848 23 6 2.7294 3.1372 -3.9966 24 1 -0.3634 0.6217 -0.8182 25 1 -0.3634 -1.0195 -0.1292 26 1 -0.3633 0.3978 0.9476 27 1 1.8933 -0.5137 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 0.6780 0.0759 3.1948 30 1 0.7355 -0.4052 -1.7453 31 1 0.3776 -0.8556 -4.3531 32 1 2.6567 3.2556 -8.3644 33 1 2.6410 1.4790 -8.4748 34 1 1.1076 2.3812 -8.4211 35 1 3.7835 2.9184 -4.1671 36 1 2.3018 3.5861 -4.8931 37 1 2.6328 3.8310 -3.1614 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000294354017.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:09:33 Heat of formation + Delta-G solvation = -23.372098 kcal Electronic energy + Delta-G solvation = -22469.379891 eV Core-core repulsion = 19022.177575 eV Total energy + Delta-G solvation = -3447.202316 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.24766 -39.86047 -38.14374 -36.39278 -35.46244 -32.82802 -31.65080 -30.16851 -29.37026 -27.60330 -26.10042 -25.32490 -23.23318 -22.21229 -20.97148 -20.00017 -18.87673 -17.67387 -17.09766 -16.74381 -16.43685 -15.81418 -15.10189 -14.96264 -14.29814 -14.12386 -13.75062 -13.61157 -13.28291 -13.21217 -13.01682 -12.64319 -12.22621 -11.98505 -11.85390 -11.51483 -11.40791 -11.22198 -10.98501 -10.86398 -10.77535 -10.55559 -10.35605 -10.18600 -10.00718 -9.01383 -8.62575 -8.37171 -7.85359 -7.80503 -6.38396 -3.98209 1.30839 2.56464 2.65724 3.07748 3.11801 3.18701 3.25652 3.37649 4.00859 4.22132 4.72218 4.88144 4.98817 5.04303 5.06747 5.27721 5.38535 5.53102 5.63894 5.67414 5.82602 6.07714 6.18841 6.24274 6.42340 6.46848 6.61994 6.67465 6.81811 7.00686 7.26367 7.30635 7.40943 7.45767 7.79124 7.83518 7.96976 8.38576 9.01108 9.24167 9.80865 10.49812 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.036906 B = 0.004546 C = 0.004096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 758.501940 B = 6158.028586 C = 6833.959197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.099 3.901 3 N -0.408 5.408 4 C -0.292 4.292 5 H 0.107 0.893 6 C 0.027 3.973 7 N -0.865 5.865 8 Si 0.935 3.065 9 H -0.267 1.267 10 H -0.279 1.279 11 H -0.280 1.280 12 C 0.487 3.513 13 O -0.600 6.600 14 C 0.053 3.947 15 C -0.212 4.212 16 C -0.107 4.107 17 C -0.058 4.058 18 C 0.541 3.459 19 O -0.509 6.509 20 O -0.361 6.361 21 C 0.037 3.963 22 N -0.390 5.390 23 C 0.063 3.937 24 H 0.035 0.965 25 H 0.040 0.960 26 H 0.101 0.899 27 H 0.054 0.946 28 H 0.111 0.889 29 H 0.269 0.731 30 H 0.188 0.812 31 H 0.148 0.852 32 H 0.100 0.900 33 H 0.062 0.938 34 H 0.062 0.938 35 H 0.072 0.928 36 H 0.085 0.915 37 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.351 -0.395 -10.839 10.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.024 4.024 3 N -0.123 5.123 4 C -0.421 4.421 5 H 0.124 0.876 6 C -0.176 4.176 7 N -0.505 5.505 8 Si 0.762 3.238 9 H -0.192 1.192 10 H -0.205 1.205 11 H -0.205 1.205 12 C 0.277 3.723 13 O -0.488 6.488 14 C -0.068 4.068 15 C -0.236 4.236 16 C -0.133 4.133 17 C -0.170 4.170 18 C 0.387 3.613 19 O -0.398 6.398 20 O -0.278 6.278 21 C -0.057 4.057 22 N -0.063 5.063 23 C -0.078 4.078 24 H 0.054 0.946 25 H 0.058 0.942 26 H 0.119 0.881 27 H 0.072 0.928 28 H 0.128 0.872 29 H 0.080 0.920 30 H 0.205 0.795 31 H 0.166 0.834 32 H 0.118 0.882 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.090 0.910 36 H 0.104 0.896 37 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 0.557 0.124 -11.041 11.056 hybrid contribution 0.049 0.178 0.400 0.441 sum 0.606 0.302 -10.641 10.663 Atomic orbital electron populations 1.22459 0.96307 0.99403 1.03897 1.22196 0.94980 0.83144 1.02056 1.43447 1.53325 1.11399 1.04178 1.19891 1.29584 1.10397 0.82214 0.87570 1.25439 0.95500 0.96613 1.00053 1.70014 1.30991 1.21982 1.27515 0.85704 0.78469 0.79149 0.80508 1.19165 1.20523 1.20535 1.16784 0.87381 0.85912 0.82246 1.90568 1.50912 1.20917 1.86393 1.21001 1.03825 0.96254 0.85719 1.22823 1.05177 0.98345 0.97213 1.21241 1.01312 0.97650 0.93108 1.19314 1.14358 0.97766 0.85514 1.19998 0.74998 0.78948 0.87332 1.90838 1.44572 1.42541 1.61807 1.86648 1.71541 1.44895 1.24766 1.23236 1.02779 1.03049 0.76603 1.43855 1.39966 1.17990 1.04531 1.22460 0.96531 0.84573 1.04223 0.94566 0.94152 0.88061 0.92783 0.87160 0.91994 0.79524 0.83381 0.88185 0.91906 0.91919 0.90986 0.89624 0.86740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.28 8.00 37.15 0.30 -2.98 16 2 C 0.10 2.13 4.79 -4.04 -0.02 2.11 16 3 N -0.41 -10.09 2.62 -116.16 -0.30 -10.40 16 4 C -0.29 -7.65 9.45 -15.06 -0.14 -7.80 16 5 H 0.11 2.92 7.26 -52.48 -0.38 2.54 16 6 C 0.03 0.65 5.31 -17.44 -0.09 0.56 16 7 N -0.86 -20.52 7.47 55.51 0.41 -20.10 16 8 Si 0.94 19.40 29.56 -169.99 -5.02 14.37 16 9 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 10 H -0.28 -5.78 7.11 56.52 0.40 -5.38 16 11 H -0.28 -5.70 7.11 56.52 0.40 -5.30 16 12 C 0.49 11.96 7.58 -12.67 -0.10 11.86 16 13 O -0.60 -15.94 14.15 5.20 0.07 -15.86 16 14 C 0.05 1.13 6.70 -82.11 -0.55 0.58 16 15 C -0.21 -3.98 7.31 -39.22 -0.29 -4.26 16 16 C -0.11 -1.85 10.60 -39.24 -0.42 -2.27 16 17 C -0.06 -1.03 6.87 -82.08 -0.56 -1.60 16 18 C 0.54 8.88 7.93 34.30 0.27 9.15 16 19 O -0.51 -9.00 16.67 -19.30 -0.32 -9.32 16 20 O -0.36 -4.97 8.02 -40.86 -0.33 -5.30 16 21 C 0.04 0.36 10.57 101.05 1.07 1.43 16 22 N -0.39 -7.39 3.18 -115.87 -0.37 -7.76 16 23 C 0.06 1.03 10.05 59.85 0.60 1.63 16 24 H 0.04 0.72 6.40 -51.93 -0.33 0.39 16 25 H 0.04 0.69 8.10 -51.93 -0.42 0.27 16 26 H 0.10 2.30 5.78 -51.93 -0.30 2.00 16 27 H 0.05 1.06 4.95 -51.93 -0.26 0.81 16 28 H 0.11 2.54 5.96 -51.93 -0.31 2.23 16 29 H 0.27 6.04 8.31 -40.82 -0.34 5.70 16 30 H 0.19 3.34 3.03 -52.49 -0.16 3.18 16 31 H 0.15 2.23 8.06 -52.49 -0.42 1.81 16 32 H 0.10 0.66 8.14 -51.93 -0.42 0.23 16 33 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 36 H 0.09 1.20 6.33 -51.93 -0.33 0.88 16 37 H 0.11 2.11 5.96 -51.93 -0.31 1.80 16 LS Contribution 300.81 15.07 4.53 4.53 Total: -1.00 -29.22 300.81 -5.30 -34.51 By element: Atomic # 1 Polarization: 10.95 SS G_CDS: -4.05 Total: 6.91 kcal Atomic # 6 Polarization: 8.35 SS G_CDS: 0.07 Total: 8.42 kcal Atomic # 7 Polarization: -38.00 SS G_CDS: -0.26 Total: -38.26 kcal Atomic # 8 Polarization: -29.91 SS G_CDS: -0.58 Total: -30.49 kcal Atomic # 14 Polarization: 19.40 SS G_CDS: -5.02 Total: 14.37 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -29.22 -5.30 -34.51 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294354017.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.143 kcal (2) G-P(sol) polarization free energy of solvation -29.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds