Wall clock time and date at job start Tue Mar 31 2020 02:09:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46509 * 109.47146 * 2 1 4 4 C 1.36649 * 119.99587 * 92.61319 * 3 2 1 5 5 H 1.08009 * 119.99239 * 163.02998 * 4 3 2 6 6 C 1.39177 * 120.00649 * 343.30527 * 4 3 2 7 7 N 1.31289 * 119.99566 * 356.89271 * 6 4 3 8 8 Si 1.86801 * 120.00301 * 176.88953 * 6 4 3 9 9 H 1.48498 * 109.46967 * 359.97438 * 8 6 4 10 10 H 1.48496 * 109.47183 * 120.00054 * 8 6 4 11 11 H 1.48501 * 109.46838 * 240.00002 * 8 6 4 12 12 C 1.34773 * 119.99595 * 272.61356 * 3 2 1 13 13 O 1.21689 * 119.99385 * 185.53661 * 12 3 2 14 14 C 1.47098 * 120.00727 * 5.54561 * 12 3 2 15 15 C 1.38122 * 125.89694 * 7.21887 * 14 12 3 16 16 C 1.39315 * 107.49841 * 179.97438 * 15 14 12 17 17 C 1.38091 * 107.48351 * 359.97438 * 16 15 14 18 18 C 1.47034 * 125.90906 * 180.02562 * 17 16 15 19 19 O 1.21548 * 120.00033 * 359.97077 * 18 17 16 20 20 O 1.34835 * 119.99839 * 179.97438 * 18 17 16 21 21 C 1.45204 * 116.99884 * 179.97438 * 20 18 17 22 22 N 1.36783 * 125.90286 * 186.91831 * 14 12 3 23 23 C 1.46498 * 125.68178 * 359.97438 * 22 14 12 24 24 H 1.08996 * 109.47416 * 52.77410 * 1 2 3 25 25 H 1.09000 * 109.47508 * 172.77765 * 1 2 3 26 26 H 1.09003 * 109.47134 * 292.77453 * 1 2 3 27 27 H 1.09000 * 109.47194 * 240.00540 * 2 1 3 28 28 H 1.09002 * 109.47746 * 119.99753 * 2 1 3 29 29 H 0.96998 * 119.99687 * 180.02562 * 7 6 4 30 30 H 1.08000 * 126.24762 * 359.94244 * 15 14 12 31 31 H 1.07995 * 126.25789 * 180.02562 * 16 15 14 32 32 H 1.08997 * 109.47090 * 179.97438 * 21 20 18 33 33 H 1.08999 * 109.47076 * 300.00284 * 21 20 18 34 34 H 1.09001 * 109.46881 * 60.00159 * 21 20 18 35 35 H 1.08998 * 109.47060 * 93.43434 * 23 22 14 36 36 H 1.09000 * 109.47098 * 213.44080 * 23 22 14 37 37 H 1.09004 * 109.46910 * 333.43537 * 23 22 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2969 2.0074 1.1822 5 1 2.9032 2.9012 1.1901 6 6 1.8042 1.4902 2.3767 7 7 1.0217 0.4362 2.3623 8 14 2.2566 2.2956 4.0004 9 1 3.1449 3.4580 3.7457 10 1 1.0221 2.7561 4.6853 11 1 2.9627 1.3126 4.8607 12 6 2.1927 2.0343 -1.1660 13 8 2.6926 3.1437 -1.1730 14 6 1.7787 1.4061 -2.4300 15 6 1.0769 0.2230 -2.5547 16 6 0.8906 -0.0122 -3.9151 17 6 1.4808 1.0309 -4.6011 18 6 1.5216 1.1884 -6.0624 19 8 1.0046 0.3532 -6.7784 20 8 2.1325 2.2593 -6.6082 21 6 2.1347 2.3493 -8.0575 22 7 2.0172 1.8956 -3.6848 23 6 2.7294 3.1372 -3.9966 24 1 -0.3634 0.6217 -0.8182 25 1 -0.3634 -1.0195 -0.1292 26 1 -0.3633 0.3978 0.9476 27 1 1.8933 -0.5137 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 0.6780 0.0759 3.1948 30 1 0.7355 -0.4052 -1.7453 31 1 0.3776 -0.8556 -4.3531 32 1 2.6567 3.2556 -8.3644 33 1 2.6410 1.4790 -8.4748 34 1 1.1076 2.3812 -8.4211 35 1 3.7835 2.9184 -4.1671 36 1 2.3018 3.5861 -4.8931 37 1 2.6328 3.8310 -3.1614 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000294354017.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:09:32 Heat of formation + Delta-G solvation = -40.022701 kcal Electronic energy + Delta-G solvation = -22470.101916 eV Core-core repulsion = 19022.177575 eV Total energy + Delta-G solvation = -3447.924340 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.69922 -41.15497 -39.87165 -37.60296 -37.29296 -34.46362 -33.30898 -31.82869 -30.84030 -28.67155 -27.48494 -27.04258 -24.73409 -23.86376 -22.46478 -21.45839 -20.39680 -19.12185 -18.74582 -18.16942 -17.60480 -17.41693 -16.81331 -16.38863 -15.95432 -15.65684 -15.32245 -15.28243 -14.76602 -14.37778 -14.32105 -14.10843 -13.66740 -13.35731 -13.19132 -13.10008 -12.88670 -12.85205 -12.73054 -12.34735 -12.10662 -11.97303 -11.87066 -11.85582 -11.68618 -10.82575 -10.48085 -9.87359 -9.59602 -9.37307 -8.22849 -5.92758 -0.10816 1.05808 1.41686 1.46919 1.48193 1.58951 1.76609 2.01789 2.29408 2.44167 3.02283 3.15605 3.63284 3.87539 3.93988 4.24910 4.30337 4.33700 4.35826 4.47082 4.53185 4.67516 4.76361 4.90094 4.94065 4.97403 5.10391 5.15739 5.25632 5.39771 5.54312 5.60823 5.86233 5.98743 6.07711 6.08827 6.52702 6.60042 7.12086 7.38773 7.94806 8.63140 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.036906 B = 0.004546 C = 0.004096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 758.501940 B = 6158.028586 C = 6833.959197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.102 3.898 3 N -0.420 5.420 4 C -0.337 4.337 5 H 0.078 0.922 6 C 0.003 3.997 7 N -0.865 5.865 8 Si 0.995 3.005 9 H -0.279 1.279 10 H -0.273 1.273 11 H -0.267 1.267 12 C 0.477 3.523 13 O -0.635 6.635 14 C 0.016 3.984 15 C -0.197 4.197 16 C -0.108 4.108 17 C -0.052 4.052 18 C 0.547 3.453 19 O -0.520 6.520 20 O -0.362 6.362 21 C 0.029 3.971 22 N -0.392 5.392 23 C 0.064 3.936 24 H 0.033 0.967 25 H 0.073 0.927 26 H 0.076 0.924 27 H 0.075 0.925 28 H 0.094 0.906 29 H 0.276 0.724 30 H 0.195 0.805 31 H 0.175 0.825 32 H 0.135 0.865 33 H 0.066 0.934 34 H 0.066 0.934 35 H 0.083 0.917 36 H 0.111 0.889 37 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.217 -1.360 -12.166 12.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.020 4.020 3 N -0.135 5.135 4 C -0.466 4.466 5 H 0.096 0.904 6 C -0.200 4.200 7 N -0.503 5.503 8 Si 0.819 3.181 9 H -0.203 1.203 10 H -0.198 1.198 11 H -0.192 1.192 12 C 0.267 3.733 13 O -0.526 6.526 14 C -0.105 4.105 15 C -0.222 4.222 16 C -0.134 4.134 17 C -0.165 4.165 18 C 0.393 3.607 19 O -0.410 6.410 20 O -0.279 6.279 21 C -0.064 4.064 22 N -0.066 5.066 23 C -0.076 4.076 24 H 0.052 0.948 25 H 0.092 0.908 26 H 0.094 0.906 27 H 0.092 0.908 28 H 0.112 0.888 29 H 0.087 0.913 30 H 0.212 0.788 31 H 0.193 0.807 32 H 0.153 0.847 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.102 0.898 36 H 0.129 0.871 37 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -0.021 -0.863 -12.370 12.400 hybrid contribution 0.224 0.485 0.640 0.834 sum 0.204 -0.378 -11.730 11.738 Atomic orbital electron populations 1.22295 0.95100 1.01161 1.02302 1.22266 0.95874 0.81696 1.02162 1.43625 1.53528 1.12403 1.03917 1.19764 1.31878 1.11013 0.83899 0.90436 1.26064 0.94944 0.96973 1.02003 1.70098 1.30000 1.21688 1.28540 0.84846 0.78170 0.78121 0.76998 1.20343 1.19796 1.19176 1.17298 0.86760 0.85765 0.83436 1.90523 1.52373 1.22499 1.87248 1.20615 1.06736 0.97881 0.85245 1.22888 1.03812 0.97196 0.98264 1.21540 1.01228 0.98334 0.92276 1.19733 1.12966 0.97316 0.86479 1.19743 0.74918 0.79385 0.86611 1.90837 1.45129 1.43157 1.61887 1.86620 1.70538 1.43396 1.27336 1.23641 1.03752 1.05027 0.73949 1.44012 1.39903 1.18578 1.04071 1.22503 0.97356 0.83583 1.04132 0.94822 0.90838 0.90581 0.90769 0.88758 0.91295 0.78810 0.80729 0.84730 0.91474 0.91500 0.89813 0.87075 0.89252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.94 8.00 71.98 0.58 -5.37 16 2 C 0.10 4.39 4.79 86.38 0.41 4.80 16 3 N -0.42 -21.44 2.62 -639.64 -1.67 -23.11 16 4 C -0.34 -18.42 9.45 84.17 0.80 -17.62 16 5 H 0.08 4.56 7.26 -2.91 -0.02 4.54 16 6 C 0.00 0.16 5.31 85.00 0.45 0.61 16 7 N -0.87 -40.92 7.47 21.70 0.16 -40.76 16 8 Si 0.99 40.11 29.56 68.60 2.03 42.13 16 9 H -0.28 -11.65 7.11 99.48 0.71 -10.95 16 10 H -0.27 -10.66 7.11 99.48 0.71 -9.95 16 11 H -0.27 -10.18 7.11 99.48 0.71 -9.47 16 12 C 0.48 24.27 7.58 86.57 0.66 24.92 16 13 O -0.64 -35.61 14.15 -4.31 -0.06 -35.67 16 14 C 0.02 0.66 6.70 40.67 0.27 0.94 16 15 C -0.20 -7.14 7.31 22.50 0.16 -6.98 16 16 C -0.11 -3.49 10.60 22.49 0.24 -3.25 16 17 C -0.05 -1.76 6.87 40.62 0.28 -1.48 16 18 C 0.55 16.57 7.93 70.13 0.56 17.13 16 19 O -0.52 -16.97 16.67 19.68 0.33 -16.65 16 20 O -0.36 -8.93 8.02 -57.48 -0.46 -9.39 16 21 C 0.03 0.46 10.57 113.37 1.20 1.66 16 22 N -0.39 -14.60 3.18 -520.50 -1.65 -16.25 16 23 C 0.06 2.09 10.05 127.77 1.28 3.37 16 24 H 0.03 1.32 6.40 -2.39 -0.02 1.30 16 25 H 0.07 2.36 8.10 -2.39 -0.02 2.34 16 26 H 0.08 3.42 5.78 -2.39 -0.01 3.41 16 27 H 0.07 2.87 4.95 -2.39 -0.01 2.85 16 28 H 0.09 4.36 5.96 -2.39 -0.01 4.34 16 29 H 0.28 12.15 8.31 -92.71 -0.77 11.38 16 30 H 0.20 6.59 3.03 -2.91 -0.01 6.58 16 31 H 0.18 4.65 8.06 -2.91 -0.02 4.63 16 32 H 0.13 1.23 8.14 -2.39 -0.02 1.21 16 33 H 0.07 1.04 8.14 -2.39 -0.02 1.03 16 34 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 35 H 0.08 2.48 8.14 -2.39 -0.02 2.46 16 36 H 0.11 2.95 6.33 -2.39 -0.02 2.94 16 37 H 0.09 3.41 5.96 -2.38 -0.01 3.39 16 Total: -1.00 -64.56 300.81 6.67 -57.89 By element: Atomic # 1 Polarization: 21.95 SS G_CDS: 1.12 Total: 23.06 kcal Atomic # 6 Polarization: 11.86 SS G_CDS: 6.88 Total: 18.74 kcal Atomic # 7 Polarization: -76.96 SS G_CDS: -3.16 Total: -80.12 kcal Atomic # 8 Polarization: -61.52 SS G_CDS: -0.19 Total: -61.71 kcal Atomic # 14 Polarization: 40.11 SS G_CDS: 2.03 Total: 42.13 kcal Total: -64.56 6.67 -57.89 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294354017.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.872 kcal (2) G-P(sol) polarization free energy of solvation -64.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.895 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds