Wall clock time and date at job start Tue Mar 31 2020 02:12:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50703 * 119.99565 * 2 1 4 4 N 1.46503 * 109.46577 * 125.00644 * 3 2 1 5 5 C 1.46507 * 119.99595 * 265.11333 * 4 3 2 6 6 C 1.50694 * 109.47520 * 263.22665 * 5 4 3 7 7 H 1.08002 * 119.99675 * 0.02562 * 6 5 4 8 8 C 1.37878 * 120.00144 * 180.02562 * 6 5 4 9 9 N 1.31513 * 120.00210 * 179.97438 * 8 6 5 10 10 Si 1.86798 * 119.99788 * 0.02562 * 8 6 5 11 11 H 1.48500 * 109.47320 * 89.99817 * 10 8 6 12 12 H 1.48505 * 109.47227 * 210.00381 * 10 8 6 13 13 H 1.48500 * 109.47176 * 329.99673 * 10 8 6 14 14 C 1.34774 * 120.00366 * 85.12434 * 4 3 2 15 15 O 1.21578 * 120.00107 * 4.06230 * 14 4 3 16 16 C 1.47544 * 119.99886 * 184.06750 * 14 4 3 17 17 C 1.36660 * 126.87684 * 173.31422 * 16 14 4 18 18 C 1.41856 * 103.80854 * 180.26350 * 17 16 14 19 19 O 1.35738 * 126.78423 * 179.74316 * 18 17 16 20 20 C 1.42896 * 117.00000 * 179.97438 * 19 18 17 21 21 C 1.52997 * 109.47264 * 179.97438 * 20 19 18 22 22 N 1.30537 * 106.42833 * 359.56947 * 18 17 16 23 23 O 1.20870 * 111.88415 * 0.46636 * 22 18 17 24 24 H 1.07995 * 120.00072 * 359.97438 * 1 2 3 25 25 H 1.07994 * 119.99504 * 179.97438 * 1 2 3 26 26 H 1.07998 * 120.00626 * 180.02562 * 2 1 3 27 27 H 1.08998 * 109.47366 * 5.00134 * 3 2 1 28 28 H 1.08998 * 109.46986 * 244.99784 * 3 2 1 29 29 H 1.09004 * 109.46785 * 23.22938 * 5 4 3 30 30 H 1.09006 * 109.46768 * 143.22226 * 5 4 3 31 31 H 0.96991 * 120.00207 * 179.97438 * 9 8 6 32 32 H 1.07997 * 128.09845 * 359.97438 * 17 16 14 33 33 H 1.09000 * 109.47196 * 299.99926 * 20 19 18 34 34 H 1.08999 * 109.47011 * 59.99304 * 20 19 18 35 35 H 1.09008 * 109.46797 * 299.99892 * 21 20 19 36 36 H 1.09000 * 109.47071 * 59.99645 * 21 20 19 37 37 H 1.08997 * 109.47260 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 2.9938 1.3319 1.1314 5 6 2.5952 1.9615 2.3928 6 6 3.1228 3.3723 2.4389 7 1 3.6972 3.7613 1.6111 8 6 2.8721 4.1665 3.5377 9 7 3.3330 5.3976 3.5781 10 14 1.8792 3.4934 4.9696 11 1 2.7941 2.8554 5.9499 12 1 1.1445 4.6036 5.6278 13 1 0.9094 2.4862 4.4694 14 6 4.2164 0.7774 1.0118 15 8 4.5751 0.3210 -0.0564 16 6 5.1195 0.7243 2.1774 17 6 6.3269 0.0883 2.2510 18 6 6.7642 0.3444 3.5759 19 8 7.9192 -0.0821 4.1474 20 6 8.1516 0.3006 5.5044 21 6 9.4922 -0.2689 5.9725 22 7 5.8381 1.0745 4.1358 23 8 4.9192 1.2927 3.3815 24 1 -0.5400 0.9353 0.0004 25 1 -0.5399 -0.9353 -0.0004 26 1 1.8501 -0.9352 -0.0004 27 1 1.3585 2.1317 0.0896 28 1 2.6213 1.4027 -0.9314 29 1 1.5075 1.9778 2.4629 30 1 3.0046 1.3929 3.2279 31 1 3.1564 5.9564 4.3509 32 1 6.8284 -0.4805 1.4821 33 1 8.1732 1.3880 5.5766 34 1 7.3517 -0.0894 6.1339 35 1 9.4700 -1.3563 5.9004 36 1 10.2922 0.1208 5.3430 37 1 9.6692 0.0227 7.0077 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000295460709.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:12:00 Heat of formation + Delta-G solvation = 26.046373 kcal Electronic energy + Delta-G solvation = -22184.849938 eV Core-core repulsion = 18739.790568 eV Total energy + Delta-G solvation = -3445.059370 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -44.47844 -39.34220 -38.75516 -35.86152 -33.66812 -33.12123 -32.28995 -31.45864 -30.90825 -28.24219 -26.30607 -24.01213 -22.98826 -22.91901 -21.84840 -20.30185 -19.55151 -17.57288 -17.49449 -16.95091 -16.50395 -16.02534 -15.78419 -15.52792 -14.84064 -14.53400 -14.25634 -14.07912 -13.36236 -13.11579 -13.02860 -12.96320 -12.74608 -12.41890 -11.89711 -11.75381 -11.71212 -11.22438 -11.10094 -11.03415 -10.89833 -10.65317 -10.29423 -9.85115 -9.60478 -9.43249 -9.22264 -8.96746 -8.66532 -8.01948 -6.17876 -4.19953 1.26067 2.35054 2.48580 2.84759 3.14769 3.25604 3.29421 3.33593 3.50882 3.87326 4.32208 4.47188 4.86364 4.87027 5.01244 5.13033 5.14980 5.22713 5.24215 5.38438 5.51126 5.62040 5.67669 5.76849 5.86390 5.97944 6.02750 6.14385 6.30157 6.66904 6.76117 6.83641 7.13374 7.18737 7.41852 7.80370 8.28586 8.43685 8.62474 8.85636 9.41009 10.94740 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.013199 B = 0.006807 C = 0.004975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2120.842676 B = 4112.522536 C = 5627.149120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.161 4.161 3 C 0.144 3.856 4 N -0.570 5.570 5 C 0.201 3.799 6 C -0.539 4.539 7 H 0.079 0.921 8 C 0.085 3.915 9 N -0.889 5.889 10 Si 0.865 3.135 11 H -0.268 1.268 12 H -0.284 1.284 13 H -0.264 1.264 14 C 0.603 3.397 15 O -0.538 6.538 16 C -0.035 4.035 17 C -0.176 4.176 18 C 0.191 3.809 19 O -0.285 6.285 20 C 0.057 3.943 21 C -0.149 4.149 22 N -0.397 5.397 23 O 0.163 5.837 24 H 0.099 0.901 25 H 0.095 0.905 26 H 0.108 0.892 27 H 0.093 0.907 28 H 0.088 0.912 29 H 0.044 0.956 30 H 0.039 0.961 31 H 0.266 0.734 32 H 0.183 0.817 33 H 0.067 0.933 34 H 0.064 0.936 35 H 0.065 0.935 36 H 0.066 0.934 37 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.589 -11.184 0.733 11.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.180 4.180 3 C 0.022 3.978 4 N -0.298 5.298 5 C 0.080 3.920 6 C -0.577 4.577 7 H 0.097 0.903 8 C -0.119 4.119 9 N -0.526 5.526 10 Si 0.691 3.309 11 H -0.194 1.194 12 H -0.210 1.210 13 H -0.188 1.188 14 C 0.388 3.612 15 O -0.418 6.418 16 C -0.102 4.102 17 C -0.199 4.199 18 C -0.006 4.006 19 O -0.193 6.193 20 C -0.019 4.019 21 C -0.206 4.206 22 N -0.117 5.117 23 O 0.095 5.905 24 H 0.117 0.883 25 H 0.113 0.887 26 H 0.126 0.874 27 H 0.111 0.889 28 H 0.107 0.893 29 H 0.061 0.939 30 H 0.057 0.943 31 H 0.076 0.924 32 H 0.200 0.800 33 H 0.085 0.915 34 H 0.082 0.918 35 H 0.084 0.916 36 H 0.086 0.914 37 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 2.886 -10.855 1.427 11.323 hybrid contribution -0.206 -0.367 0.546 0.690 sum 2.680 -11.222 1.974 11.705 Atomic orbital electron populations 1.23820 0.95716 1.01802 1.01232 1.23383 0.96151 0.99219 0.99246 1.20579 0.92012 0.95281 0.89968 1.47894 1.12637 1.53569 1.15703 1.20148 0.97047 0.94503 0.80267 1.21219 1.35932 0.94925 1.05649 0.90343 1.24755 0.94974 0.94495 0.97680 1.69875 1.44886 1.07518 1.30347 0.87007 0.80990 0.79203 0.83659 1.19352 1.20956 1.18835 1.16539 0.80935 0.78980 0.84709 1.90778 1.75251 1.49872 1.25885 1.23937 0.97491 0.99290 0.89442 1.21972 0.95577 1.06736 0.95635 1.21775 0.89326 0.97676 0.91794 1.86143 1.32332 1.71699 1.29154 1.22773 0.98622 1.00566 0.79907 1.21777 0.95348 1.02057 1.01459 1.74028 0.99627 1.19293 1.18717 1.85443 1.32836 1.55127 1.17140 0.88267 0.88667 0.87445 0.88912 0.89342 0.93857 0.94304 0.92377 0.79958 0.91497 0.91755 0.91562 0.91443 0.90188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.33 14.32 29.01 0.42 -1.91 16 2 C -0.16 -2.33 9.81 -36.03 -0.35 -2.68 16 3 C 0.14 2.40 5.80 -5.19 -0.03 2.37 16 4 N -0.57 -11.39 2.47 -177.66 -0.44 -11.83 16 5 C 0.20 4.44 3.81 -5.19 -0.02 4.42 16 6 C -0.54 -14.17 9.02 -34.44 -0.31 -14.48 16 7 H 0.08 2.30 8.06 -52.49 -0.42 1.88 16 8 C 0.09 2.32 5.47 -17.82 -0.10 2.22 16 9 N -0.89 -26.07 13.96 55.43 0.77 -25.29 16 10 Si 0.87 20.26 27.47 -169.99 -4.67 15.59 16 11 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 12 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 13 H -0.26 -5.76 6.54 56.52 0.37 -5.39 16 14 C 0.60 12.34 7.57 -12.47 -0.09 12.25 16 15 O -0.54 -11.33 16.55 5.30 0.09 -11.25 16 16 C -0.03 -0.70 6.85 -36.36 -0.25 -0.95 16 17 C -0.18 -3.14 10.98 -38.77 -0.43 -3.57 16 18 C 0.19 3.51 8.00 -16.72 -0.13 3.38 16 19 O -0.29 -4.59 10.21 -18.92 -0.19 -4.79 16 20 C 0.06 0.75 6.38 37.16 0.24 0.98 16 21 C -0.15 -1.40 10.28 37.16 0.38 -1.02 16 22 N -0.40 -8.25 11.50 30.47 0.35 -7.90 16 23 O 0.16 3.57 7.34 15.51 0.11 3.69 16 24 H 0.10 1.16 7.84 -52.49 -0.41 0.75 16 25 H 0.09 1.01 8.06 -52.49 -0.42 0.59 16 26 H 0.11 1.57 8.06 -52.49 -0.42 1.14 16 27 H 0.09 1.49 7.69 -51.93 -0.40 1.09 16 28 H 0.09 1.47 7.52 -51.93 -0.39 1.08 16 29 H 0.04 0.92 7.08 -51.93 -0.37 0.56 16 30 H 0.04 0.88 4.88 -51.93 -0.25 0.62 16 31 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 32 H 0.18 2.76 8.06 -52.49 -0.42 2.33 16 33 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.07 0.58 8.14 -51.92 -0.42 0.16 16 36 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 37 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 324.79 15.07 4.89 4.89 Total: -1.00 -30.37 324.79 -4.55 -34.93 By element: Atomic # 1 Polarization: 5.74 SS G_CDS: -4.79 Total: 0.94 kcal Atomic # 6 Polarization: 1.69 SS G_CDS: -0.68 Total: 1.01 kcal Atomic # 7 Polarization: -45.70 SS G_CDS: 0.68 Total: -45.02 kcal Atomic # 8 Polarization: -12.36 SS G_CDS: 0.01 Total: -12.35 kcal Atomic # 14 Polarization: 20.26 SS G_CDS: -4.67 Total: 15.59 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -30.37 -4.55 -34.93 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000295460709.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.973 kcal (2) G-P(sol) polarization free energy of solvation -30.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.927 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds