Wall clock time and date at job start Tue Mar 31 2020 02:12:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50703 * 119.99565 * 2 1 4 4 N 1.46503 * 109.46577 * 125.00644 * 3 2 1 5 5 C 1.46507 * 119.99595 * 265.11333 * 4 3 2 6 6 C 1.50694 * 109.47520 * 263.22665 * 5 4 3 7 7 H 1.08002 * 119.99675 * 0.02562 * 6 5 4 8 8 C 1.37878 * 120.00144 * 180.02562 * 6 5 4 9 9 N 1.31513 * 120.00210 * 179.97438 * 8 6 5 10 10 Si 1.86798 * 119.99788 * 0.02562 * 8 6 5 11 11 H 1.48500 * 109.47320 * 89.99817 * 10 8 6 12 12 H 1.48505 * 109.47227 * 210.00381 * 10 8 6 13 13 H 1.48500 * 109.47176 * 329.99673 * 10 8 6 14 14 C 1.34774 * 120.00366 * 85.12434 * 4 3 2 15 15 O 1.21578 * 120.00107 * 4.06230 * 14 4 3 16 16 C 1.47544 * 119.99886 * 184.06750 * 14 4 3 17 17 C 1.36660 * 126.87684 * 173.31422 * 16 14 4 18 18 C 1.41856 * 103.80854 * 180.26350 * 17 16 14 19 19 O 1.35738 * 126.78423 * 179.74316 * 18 17 16 20 20 C 1.42896 * 117.00000 * 179.97438 * 19 18 17 21 21 C 1.52997 * 109.47264 * 179.97438 * 20 19 18 22 22 N 1.30537 * 106.42833 * 359.56947 * 18 17 16 23 23 O 1.20870 * 111.88415 * 0.46636 * 22 18 17 24 24 H 1.07995 * 120.00072 * 359.97438 * 1 2 3 25 25 H 1.07994 * 119.99504 * 179.97438 * 1 2 3 26 26 H 1.07998 * 120.00626 * 180.02562 * 2 1 3 27 27 H 1.08998 * 109.47366 * 5.00134 * 3 2 1 28 28 H 1.08998 * 109.46986 * 244.99784 * 3 2 1 29 29 H 1.09004 * 109.46785 * 23.22938 * 5 4 3 30 30 H 1.09006 * 109.46768 * 143.22226 * 5 4 3 31 31 H 0.96991 * 120.00207 * 179.97438 * 9 8 6 32 32 H 1.07997 * 128.09845 * 359.97438 * 17 16 14 33 33 H 1.09000 * 109.47196 * 299.99926 * 20 19 18 34 34 H 1.08999 * 109.47011 * 59.99304 * 20 19 18 35 35 H 1.09008 * 109.46797 * 299.99892 * 21 20 19 36 36 H 1.09000 * 109.47071 * 59.99645 * 21 20 19 37 37 H 1.08997 * 109.47260 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 2.9938 1.3319 1.1314 5 6 2.5952 1.9615 2.3928 6 6 3.1228 3.3723 2.4389 7 1 3.6972 3.7613 1.6111 8 6 2.8721 4.1665 3.5377 9 7 3.3330 5.3976 3.5781 10 14 1.8792 3.4934 4.9696 11 1 2.7941 2.8554 5.9499 12 1 1.1445 4.6036 5.6278 13 1 0.9094 2.4862 4.4694 14 6 4.2164 0.7774 1.0118 15 8 4.5751 0.3210 -0.0564 16 6 5.1195 0.7243 2.1774 17 6 6.3269 0.0883 2.2510 18 6 6.7642 0.3444 3.5759 19 8 7.9192 -0.0821 4.1474 20 6 8.1516 0.3006 5.5044 21 6 9.4922 -0.2689 5.9725 22 7 5.8381 1.0745 4.1358 23 8 4.9192 1.2927 3.3815 24 1 -0.5400 0.9353 0.0004 25 1 -0.5399 -0.9353 -0.0004 26 1 1.8501 -0.9352 -0.0004 27 1 1.3585 2.1317 0.0896 28 1 2.6213 1.4027 -0.9314 29 1 1.5075 1.9778 2.4629 30 1 3.0046 1.3929 3.2279 31 1 3.1564 5.9564 4.3509 32 1 6.8284 -0.4805 1.4821 33 1 8.1732 1.3880 5.5766 34 1 7.3517 -0.0894 6.1339 35 1 9.4700 -1.3563 5.9004 36 1 10.2922 0.1208 5.3430 37 1 9.6692 0.0227 7.0077 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000295460709.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:12:00 Heat of formation + Delta-G solvation = 5.239973 kcal Electronic energy + Delta-G solvation = -22185.752171 eV Core-core repulsion = 18739.790568 eV Total energy + Delta-G solvation = -3445.961603 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -45.99831 -40.91400 -40.03934 -37.40566 -35.16989 -34.51254 -34.11449 -32.80483 -32.09231 -30.06845 -27.71381 -25.35002 -24.58105 -24.41316 -23.28643 -21.65328 -20.75894 -19.27380 -19.06977 -18.75795 -17.95637 -17.52712 -17.06920 -16.97860 -16.30938 -15.96046 -15.85784 -15.48017 -14.89383 -14.70416 -14.39236 -14.16491 -14.05262 -13.57636 -13.49427 -13.15117 -12.97363 -12.77329 -12.55031 -12.30919 -12.23726 -12.12992 -11.96339 -11.70304 -11.40451 -10.94010 -10.77160 -10.40030 -10.32015 -9.64915 -8.28074 -6.34065 -0.29388 1.01477 1.21320 1.39068 1.43503 1.48374 1.54589 1.68411 1.95383 2.36111 2.37723 3.03981 3.08223 3.51644 3.69999 3.90684 3.97159 4.06586 4.14739 4.19824 4.27012 4.50775 4.55997 4.64937 4.79148 4.80193 4.85068 4.90138 5.07379 5.13575 5.40606 5.44667 5.72202 5.86487 5.87746 6.07793 6.33643 6.66998 6.82861 7.07124 7.30808 8.88303 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.013199 B = 0.006807 C = 0.004975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2120.842676 B = 4112.522536 C = 5627.149120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.184 4.184 3 C 0.140 3.860 4 N -0.573 5.573 5 C 0.211 3.789 6 C -0.531 4.531 7 H 0.033 0.967 8 C 0.030 3.970 9 N -0.941 5.941 10 Si 0.925 3.075 11 H -0.271 1.271 12 H -0.282 1.282 13 H -0.231 1.231 14 C 0.601 3.399 15 O -0.549 6.549 16 C -0.056 4.056 17 C -0.160 4.160 18 C 0.199 3.801 19 O -0.284 6.284 20 C 0.047 3.953 21 C -0.141 4.141 22 N -0.418 5.418 23 O 0.133 5.867 24 H 0.108 0.892 25 H 0.119 0.881 26 H 0.104 0.896 27 H 0.097 0.903 28 H 0.083 0.917 29 H 0.062 0.938 30 H 0.044 0.956 31 H 0.267 0.733 32 H 0.211 0.789 33 H 0.056 0.944 34 H 0.065 0.935 35 H 0.074 0.926 36 H 0.070 0.930 37 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.823 -13.291 1.430 13.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.203 4.203 3 C 0.019 3.981 4 N -0.301 5.301 5 C 0.089 3.911 6 C -0.569 4.569 7 H 0.051 0.949 8 C -0.169 4.169 9 N -0.580 5.580 10 Si 0.748 3.252 11 H -0.197 1.197 12 H -0.208 1.208 13 H -0.154 1.154 14 C 0.386 3.614 15 O -0.429 6.429 16 C -0.122 4.122 17 C -0.182 4.182 18 C 0.002 3.998 19 O -0.192 6.192 20 C -0.028 4.028 21 C -0.198 4.198 22 N -0.142 5.142 23 O 0.068 5.932 24 H 0.126 0.874 25 H 0.137 0.863 26 H 0.122 0.878 27 H 0.115 0.885 28 H 0.101 0.899 29 H 0.080 0.920 30 H 0.061 0.939 31 H 0.076 0.924 32 H 0.227 0.773 33 H 0.074 0.926 34 H 0.083 0.917 35 H 0.093 0.907 36 H 0.089 0.911 37 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 2.089 -12.984 2.082 13.315 hybrid contribution 0.129 0.286 0.271 0.415 sum 2.217 -12.698 2.354 13.103 Atomic orbital electron populations 1.24090 0.94865 1.03387 0.97393 1.23145 0.96784 0.97676 1.02707 1.20759 0.91715 0.97088 0.88585 1.47950 1.13133 1.53069 1.15912 1.19913 0.97615 0.91994 0.81537 1.21327 1.34688 0.96932 1.03969 0.94898 1.25580 0.96227 0.94536 1.00564 1.70026 1.47214 1.09301 1.31491 0.86041 0.79984 0.79230 0.79929 1.19668 1.20782 1.15424 1.16638 0.81090 0.78910 0.84740 1.90758 1.75425 1.50526 1.26198 1.24105 0.98562 1.00271 0.89271 1.22341 0.94519 1.05482 0.95880 1.21971 0.89442 0.96407 0.91946 1.86191 1.30974 1.71333 1.30684 1.23108 1.00881 1.00336 0.78485 1.21805 0.92855 1.02422 1.02668 1.73992 1.00314 1.20681 1.19226 1.85385 1.33671 1.56351 1.17795 0.87363 0.86266 0.87766 0.88466 0.89924 0.92032 0.93892 0.92402 0.77250 0.92570 0.91690 0.90668 0.91139 0.87806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.44 14.32 67.78 0.97 -2.47 16 2 C -0.18 -5.00 9.81 25.64 0.25 -4.74 16 3 C 0.14 4.58 5.80 85.63 0.50 5.08 16 4 N -0.57 -22.80 2.47 -834.25 -2.06 -24.86 16 5 C 0.21 9.19 3.81 85.63 0.33 9.52 16 6 C -0.53 -28.49 9.02 25.60 0.23 -28.26 16 7 H 0.03 2.02 8.06 -2.91 -0.02 2.00 16 8 C 0.03 1.67 5.47 84.66 0.46 2.13 16 9 N -0.94 -56.83 13.96 21.45 0.30 -56.53 16 10 Si 0.93 41.31 27.47 68.60 1.88 43.19 16 11 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 12 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 13 H -0.23 -9.05 6.54 99.48 0.65 -8.40 16 14 C 0.60 24.65 7.57 86.70 0.66 25.31 16 15 O -0.55 -23.03 16.55 -3.96 -0.07 -23.10 16 16 C -0.06 -2.26 6.85 24.36 0.17 -2.09 16 17 C -0.16 -5.56 10.98 22.80 0.25 -5.31 16 18 C 0.20 7.21 8.00 85.78 0.69 7.90 16 19 O -0.28 -8.79 10.21 -90.62 -0.92 -9.71 16 20 C 0.05 1.17 6.38 71.98 0.46 1.63 16 21 C -0.14 -2.31 10.28 71.98 0.74 -1.57 16 22 N -0.42 -17.40 11.50 -172.02 -1.98 -19.38 16 23 O 0.13 5.87 7.34 65.70 0.48 6.35 16 24 H 0.11 2.15 7.84 -2.91 -0.02 2.13 16 25 H 0.12 2.03 8.06 -2.91 -0.02 2.01 16 26 H 0.10 2.90 8.06 -2.91 -0.02 2.87 16 27 H 0.10 3.03 7.69 -2.39 -0.02 3.01 16 28 H 0.08 2.76 7.52 -2.39 -0.02 2.74 16 29 H 0.06 2.48 7.08 -2.38 -0.02 2.46 16 30 H 0.04 1.90 4.88 -2.38 -0.01 1.88 16 31 H 0.27 15.15 8.31 -92.71 -0.77 14.38 16 32 H 0.21 5.93 8.06 -2.91 -0.02 5.91 16 33 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 34 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 35 H 0.07 1.12 8.14 -2.38 -0.02 1.10 16 36 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 37 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 Total: -1.00 -66.95 324.79 4.35 -62.60 By element: Atomic # 1 Polarization: 13.29 SS G_CDS: 1.02 Total: 14.30 kcal Atomic # 6 Polarization: 1.43 SS G_CDS: 5.70 Total: 7.13 kcal Atomic # 7 Polarization: -97.03 SS G_CDS: -3.74 Total: -100.77 kcal Atomic # 8 Polarization: -25.95 SS G_CDS: -0.51 Total: -26.46 kcal Atomic # 14 Polarization: 41.31 SS G_CDS: 1.88 Total: 43.19 kcal Total: -66.95 4.35 -62.60 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000295460709.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.842 kcal (2) G-P(sol) polarization free energy of solvation -66.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.602 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds