Wall clock time and date at job start Tue Mar 31 2020 01:50:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47214 * 2 1 4 4 O 1.42895 * 109.47143 * 120.00045 * 2 1 3 5 5 N 1.41599 * 113.99889 * 84.99929 * 4 2 1 6 6 C 1.34780 * 119.99997 * 180.02562 * 5 4 2 7 7 O 1.21589 * 119.99759 * 0.02562 * 6 5 4 8 8 N 1.34774 * 120.00396 * 180.02562 * 6 5 4 9 9 C 1.39937 * 120.00217 * 174.73479 * 8 6 5 10 10 C 1.38954 * 120.03519 * 326.33314 * 9 8 6 11 11 C 1.38162 * 120.06584 * 180.02562 * 10 9 8 12 12 C 1.38167 * 120.14270 * 359.72087 * 11 10 9 13 13 C 1.38913 * 120.06325 * 0.56049 * 12 11 10 14 14 O 1.35755 * 120.03103 * 179.72108 * 13 12 11 15 15 C 1.34833 * 116.99918 * 173.81829 * 14 13 12 16 16 H 1.07995 * 119.99891 * 354.58595 * 15 14 13 17 17 C 1.38647 * 119.99879 * 174.59004 * 15 14 13 18 18 N 1.31553 * 119.99863 * 179.97438 * 17 15 14 19 19 Si 1.86801 * 120.00001 * 359.97438 * 17 15 14 20 20 H 1.48498 * 109.47036 * 90.00470 * 19 17 15 21 21 H 1.48502 * 109.47131 * 210.00079 * 19 17 15 22 22 H 1.48499 * 109.47540 * 330.00277 * 19 17 15 23 23 C 1.38708 * 120.03534 * 146.35441 * 9 8 6 24 24 H 1.09003 * 109.47366 * 60.00026 * 1 2 3 25 25 H 1.08998 * 109.47406 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47281 * 300.00562 * 1 2 3 27 27 H 1.09002 * 109.47001 * 240.00161 * 2 1 3 28 28 H 1.09001 * 109.47137 * 180.02562 * 3 2 1 29 29 H 1.09003 * 109.46932 * 300.00239 * 3 2 1 30 30 H 1.08995 * 109.47694 * 59.99659 * 3 2 1 31 31 H 0.96998 * 120.00331 * 359.97438 * 5 4 2 32 32 H 0.97001 * 119.99318 * 354.72331 * 8 6 5 33 33 H 1.07998 * 119.97096 * 0.02562 * 10 9 8 34 34 H 1.08000 * 119.92910 * 180.02562 * 11 10 9 35 35 H 1.07997 * 119.96547 * 180.27359 * 12 11 10 36 36 H 0.97006 * 120.00052 * 179.97438 * 18 17 15 37 37 H 1.08000 * 120.07285 * 0.02562 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6736 1.1667 5 7 2.0920 -2.0799 1.0252 6 6 2.5267 -2.8355 2.0531 7 8 2.8449 -2.3095 3.1022 8 7 2.6088 -4.1739 1.9183 9 6 3.1629 -4.9479 2.9441 10 6 4.2000 -4.4392 3.7164 11 6 4.7479 -5.2030 4.7290 12 6 4.2631 -6.4721 4.9808 13 6 3.2304 -6.9884 4.2084 14 8 2.7583 -8.2376 4.4527 15 6 1.6735 -8.6294 3.7544 16 1 1.1684 -7.9305 3.1044 17 6 1.2064 -9.9296 3.8711 18 7 0.1477 -10.3118 3.1902 19 14 2.0806 -11.1387 4.9951 20 1 1.4879 -11.0679 6.3549 21 1 1.9251 -12.5147 4.4586 22 1 3.5235 -10.7950 5.0656 23 6 2.6777 -6.2237 3.1907 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5139 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 3.1300 1.4424 -0.0005 29 1 1.6766 1.9563 -0.8900 30 1 1.6767 1.9564 0.8899 31 1 1.8371 -2.4996 0.1887 32 1 2.2835 -4.6007 1.1102 33 1 4.5782 -3.4459 3.5250 34 1 5.5537 -4.8053 5.3282 35 1 4.6905 -7.0649 5.7759 36 1 -0.1789 -11.2216 3.2715 37 1 1.8722 -6.6216 2.5913 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000296591922.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:50:07 Heat of formation + Delta-G solvation = -17.234821 kcal Electronic energy + Delta-G solvation = -21059.572560 eV Core-core repulsion = 17612.636377 eV Total energy + Delta-G solvation = -3446.936184 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 1.48 seconds Orbital eigenvalues (eV) -40.30392 -38.97216 -38.11707 -36.49505 -34.28486 -33.75246 -32.35334 -31.14526 -29.30239 -28.39527 -27.64126 -25.20282 -22.65627 -22.03104 -21.76753 -20.46579 -18.63444 -18.47459 -17.67575 -17.38523 -15.83891 -15.49331 -15.26388 -15.13233 -14.69907 -14.49619 -14.06072 -13.88164 -13.73474 -13.57589 -13.09036 -12.75513 -12.64203 -12.34524 -12.27082 -12.14709 -11.73986 -11.44287 -11.22496 -11.12101 -10.95799 -10.68973 -10.29680 -10.05821 -9.70935 -9.49682 -9.01917 -8.84082 -7.78417 -7.26824 -6.42033 -4.09104 1.46922 2.01863 2.31692 3.22654 3.26395 3.28896 3.41278 3.74379 4.24054 4.25301 4.39295 4.52343 4.54469 4.66766 4.90029 5.08721 5.15935 5.34779 5.36780 5.41262 5.60194 5.71494 5.79263 5.93847 6.00302 6.14279 6.17324 6.37274 6.60086 6.76560 6.90996 7.14081 7.23240 7.25495 7.62141 7.77624 7.92219 8.03608 8.61972 8.93727 9.56464 10.65765 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.027556 B = 0.003405 C = 0.003071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1015.850652 B = 8220.558576 C = 9114.102570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.052 3.948 3 C -0.144 4.144 4 O -0.120 6.120 5 N -0.615 5.615 6 C 0.720 3.280 7 O -0.552 6.552 8 N -0.673 5.673 9 C 0.200 3.800 10 C -0.197 4.197 11 C -0.063 4.063 12 C -0.201 4.201 13 C 0.175 3.825 14 O -0.216 6.216 15 C -0.389 4.389 16 H 0.105 0.895 17 C 0.063 3.937 18 N -0.882 5.882 19 Si 0.906 3.094 20 H -0.273 1.273 21 H -0.283 1.283 22 H -0.259 1.259 23 C -0.244 4.244 24 H 0.069 0.931 25 H 0.060 0.940 26 H 0.068 0.932 27 H 0.076 0.924 28 H 0.067 0.933 29 H 0.078 0.922 30 H 0.069 0.931 31 H 0.402 0.598 32 H 0.405 0.595 33 H 0.123 0.877 34 H 0.118 0.882 35 H 0.118 0.882 36 H 0.279 0.721 37 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.278 16.724 -9.067 19.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.006 4.006 3 C -0.202 4.202 4 O -0.124 6.124 5 N -0.321 5.321 6 C 0.420 3.580 7 O -0.426 6.426 8 N -0.324 5.324 9 C 0.107 3.893 10 C -0.218 4.218 11 C -0.082 4.082 12 C -0.221 4.221 13 C 0.122 3.878 14 O -0.121 6.121 15 C -0.464 4.464 16 H 0.122 0.878 17 C -0.140 4.140 18 N -0.520 5.520 19 Si 0.731 3.269 20 H -0.199 1.199 21 H -0.209 1.209 22 H -0.183 1.183 23 C -0.266 4.266 24 H 0.088 0.912 25 H 0.080 0.920 26 H 0.087 0.913 27 H 0.094 0.906 28 H 0.086 0.914 29 H 0.097 0.903 30 H 0.088 0.912 31 H 0.242 0.758 32 H 0.240 0.760 33 H 0.141 0.859 34 H 0.136 0.864 35 H 0.137 0.863 36 H 0.089 0.911 37 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 3.524 17.043 -7.854 19.094 hybrid contribution -0.472 -0.846 -0.867 1.300 sum 3.052 16.197 -8.722 18.647 Atomic orbital electron populations 1.22372 0.95127 1.03023 1.03101 1.22665 0.94685 0.94354 0.88936 1.21807 1.02327 0.92802 1.03303 1.90629 1.88333 0.99531 1.33877 1.46158 1.74157 0.95707 1.16062 1.15277 0.78842 0.80906 0.82931 1.90973 1.53825 1.71427 1.26332 1.42321 1.65082 1.03898 1.21087 1.17132 0.92677 0.90013 0.89486 1.20665 0.99123 1.01316 1.00697 1.20529 0.98375 0.92909 0.96392 1.20249 1.01064 0.97113 1.03630 1.18782 0.91899 0.85164 0.91911 1.83617 1.43345 1.25953 1.59199 1.20722 1.02057 0.98098 1.25546 0.87809 1.24458 0.95861 0.96628 0.97044 1.69644 1.22754 1.19523 1.40057 0.86175 0.81192 0.79133 0.80386 1.19860 1.20903 1.18271 1.20880 1.06315 0.95391 1.04000 0.91227 0.92050 0.91340 0.90606 0.91378 0.90292 0.91216 0.75795 0.76015 0.85903 0.86367 0.86346 0.91095 0.84568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 46. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.27 9.56 37.16 0.36 -0.92 16 2 C 0.05 0.41 3.47 -26.73 -0.09 0.32 16 3 C -0.14 -0.93 9.56 37.16 0.36 -0.57 16 4 O -0.12 -1.53 10.75 -29.62 -0.32 -1.85 16 5 N -0.62 -7.44 6.38 27.63 0.18 -7.26 16 6 C 0.72 11.67 8.44 -86.92 -0.73 10.94 16 7 O -0.55 -11.43 14.45 -12.86 -0.19 -11.62 16 8 N -0.67 -10.27 5.35 -14.24 -0.08 -10.34 16 9 C 0.20 3.80 6.27 -83.72 -0.52 3.28 16 10 C -0.20 -3.74 8.65 -39.34 -0.34 -4.08 16 11 C -0.06 -1.14 10.03 -39.64 -0.40 -1.54 16 12 C -0.20 -4.03 9.99 -39.36 -0.39 -4.43 16 13 C 0.17 4.03 6.64 -39.13 -0.26 3.77 16 14 O -0.22 -5.64 8.58 0.03 0.00 -5.64 16 15 C -0.39 -10.78 9.90 30.88 0.31 -10.47 16 16 H 0.10 2.92 5.53 -52.49 -0.29 2.63 16 17 C 0.06 1.75 5.49 -17.52 -0.10 1.65 16 18 N -0.88 -25.13 13.96 55.48 0.77 -24.36 16 19 Si 0.91 21.50 28.62 -169.99 -4.86 16.63 16 20 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 21 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 22 H -0.26 -6.15 7.11 56.52 0.40 -5.75 16 23 C -0.24 -5.19 9.04 -39.21 -0.35 -5.55 16 24 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 25 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.08 0.46 7.94 -51.93 -0.41 0.05 16 28 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.40 3.21 8.45 -40.82 -0.34 2.86 16 32 H 0.40 4.69 8.83 -40.82 -0.36 4.33 16 33 H 0.12 2.34 6.43 -52.49 -0.34 2.00 16 34 H 0.12 1.76 8.06 -52.49 -0.42 1.34 16 35 H 0.12 2.19 8.06 -52.49 -0.42 1.76 16 36 H 0.28 7.36 8.31 -40.82 -0.34 7.02 16 37 H 0.14 2.95 5.71 -52.49 -0.30 2.65 16 LS Contribution 322.65 15.07 4.86 4.86 Total: -1.00 -33.87 322.65 -6.37 -40.24 By element: Atomic # 1 Polarization: 11.50 SS G_CDS: -4.56 Total: 6.93 kcal Atomic # 6 Polarization: -5.42 SS G_CDS: -2.18 Total: -7.60 kcal Atomic # 7 Polarization: -42.84 SS G_CDS: 0.87 Total: -41.96 kcal Atomic # 8 Polarization: -18.60 SS G_CDS: -0.50 Total: -19.10 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -4.86 Total: 16.63 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -33.87 -6.37 -40.24 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000296591922.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.004 kcal (2) G-P(sol) polarization free energy of solvation -33.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.239 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.49 seconds