Wall clock time and date at job start Tue Mar 31 2020 01:50:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47214 * 2 1 4 4 O 1.42895 * 109.47143 * 120.00045 * 2 1 3 5 5 N 1.41599 * 113.99889 * 84.99929 * 4 2 1 6 6 C 1.34780 * 119.99997 * 180.02562 * 5 4 2 7 7 O 1.21589 * 119.99759 * 0.02562 * 6 5 4 8 8 N 1.34774 * 120.00396 * 180.02562 * 6 5 4 9 9 C 1.39937 * 120.00217 * 174.73479 * 8 6 5 10 10 C 1.38954 * 120.03519 * 326.33314 * 9 8 6 11 11 C 1.38162 * 120.06584 * 180.02562 * 10 9 8 12 12 C 1.38167 * 120.14270 * 359.72087 * 11 10 9 13 13 C 1.38913 * 120.06325 * 0.56049 * 12 11 10 14 14 O 1.35755 * 120.03103 * 179.72108 * 13 12 11 15 15 C 1.34833 * 116.99918 * 173.81829 * 14 13 12 16 16 H 1.07995 * 119.99891 * 354.58595 * 15 14 13 17 17 C 1.38647 * 119.99879 * 174.59004 * 15 14 13 18 18 N 1.31553 * 119.99863 * 179.97438 * 17 15 14 19 19 Si 1.86801 * 120.00001 * 359.97438 * 17 15 14 20 20 H 1.48498 * 109.47036 * 90.00470 * 19 17 15 21 21 H 1.48502 * 109.47131 * 210.00079 * 19 17 15 22 22 H 1.48499 * 109.47540 * 330.00277 * 19 17 15 23 23 C 1.38708 * 120.03534 * 146.35441 * 9 8 6 24 24 H 1.09003 * 109.47366 * 60.00026 * 1 2 3 25 25 H 1.08998 * 109.47406 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47281 * 300.00562 * 1 2 3 27 27 H 1.09002 * 109.47001 * 240.00161 * 2 1 3 28 28 H 1.09001 * 109.47137 * 180.02562 * 3 2 1 29 29 H 1.09003 * 109.46932 * 300.00239 * 3 2 1 30 30 H 1.08995 * 109.47694 * 59.99659 * 3 2 1 31 31 H 0.96998 * 120.00331 * 359.97438 * 5 4 2 32 32 H 0.97001 * 119.99318 * 354.72331 * 8 6 5 33 33 H 1.07998 * 119.97096 * 0.02562 * 10 9 8 34 34 H 1.08000 * 119.92910 * 180.02562 * 11 10 9 35 35 H 1.07997 * 119.96547 * 180.27359 * 12 11 10 36 36 H 0.97006 * 120.00052 * 179.97438 * 18 17 15 37 37 H 1.08000 * 120.07285 * 0.02562 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6736 1.1667 5 7 2.0920 -2.0799 1.0252 6 6 2.5267 -2.8355 2.0531 7 8 2.8449 -2.3095 3.1022 8 7 2.6088 -4.1739 1.9183 9 6 3.1629 -4.9479 2.9441 10 6 4.2000 -4.4392 3.7164 11 6 4.7479 -5.2030 4.7290 12 6 4.2631 -6.4721 4.9808 13 6 3.2304 -6.9884 4.2084 14 8 2.7583 -8.2376 4.4527 15 6 1.6735 -8.6294 3.7544 16 1 1.1684 -7.9305 3.1044 17 6 1.2064 -9.9296 3.8711 18 7 0.1477 -10.3118 3.1902 19 14 2.0806 -11.1387 4.9951 20 1 1.4879 -11.0679 6.3549 21 1 1.9251 -12.5147 4.4586 22 1 3.5235 -10.7950 5.0656 23 6 2.6777 -6.2237 3.1907 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5139 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 3.1300 1.4424 -0.0005 29 1 1.6766 1.9563 -0.8900 30 1 1.6767 1.9564 0.8899 31 1 1.8371 -2.4996 0.1887 32 1 2.2835 -4.6007 1.1102 33 1 4.5782 -3.4459 3.5250 34 1 5.5537 -4.8053 5.3282 35 1 4.6905 -7.0649 5.7759 36 1 -0.1789 -11.2216 3.2715 37 1 1.8722 -6.6216 2.5913 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000296591922.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:50:06 Heat of formation + Delta-G solvation = -40.073342 kcal Electronic energy + Delta-G solvation = -21060.562913 eV Core-core repulsion = 17612.636377 eV Total energy + Delta-G solvation = -3447.926536 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.69096 -40.55047 -39.16300 -38.07659 -35.73003 -34.67691 -34.34788 -32.20917 -30.91548 -29.89805 -28.18534 -27.16478 -24.05876 -23.40603 -22.76300 -21.88815 -20.17419 -19.62601 -19.30378 -18.83505 -17.09922 -17.03823 -16.68140 -16.34397 -15.92394 -15.89111 -15.60161 -15.37992 -15.14297 -14.69713 -14.52308 -14.17290 -13.99812 -13.41588 -13.32856 -13.16966 -12.89902 -12.80521 -12.74127 -12.38566 -12.06464 -12.05377 -11.85309 -11.59359 -11.37929 -11.21812 -10.81465 -10.07228 -9.37396 -8.90249 -8.47460 -6.19888 0.32325 0.55232 0.68514 1.35755 1.39590 1.55542 1.95074 2.31195 2.58451 2.80158 3.12002 3.14303 3.48920 3.82240 3.95442 4.11566 4.12355 4.33253 4.43338 4.60633 4.66098 4.67673 4.78985 4.82251 4.85132 4.93175 5.16919 5.23697 5.26160 5.37050 5.48138 5.57914 5.68957 5.77752 5.88405 5.98783 6.23681 6.78407 6.87312 7.39275 7.60713 8.63814 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.027556 B = 0.003405 C = 0.003071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1015.850652 B = 8220.558576 C = 9114.102570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.044 3.956 3 C -0.142 4.142 4 O -0.149 6.149 5 N -0.595 5.595 6 C 0.719 3.281 7 O -0.600 6.600 8 N -0.663 5.663 9 C 0.203 3.797 10 C -0.193 4.193 11 C -0.051 4.051 12 C -0.201 4.201 13 C 0.142 3.858 14 O -0.239 6.239 15 C -0.397 4.397 16 H 0.083 0.917 17 C 0.012 3.988 18 N -0.922 5.922 19 Si 0.968 3.032 20 H -0.268 1.268 21 H -0.269 1.269 22 H -0.260 1.260 23 C -0.252 4.252 24 H 0.094 0.906 25 H 0.055 0.945 26 H 0.053 0.947 27 H 0.100 0.900 28 H 0.063 0.937 29 H 0.107 0.893 30 H 0.059 0.941 31 H 0.423 0.577 32 H 0.422 0.578 33 H 0.128 0.872 34 H 0.160 0.840 35 H 0.136 0.864 36 H 0.284 0.716 37 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.513 18.037 -9.552 20.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.014 4.014 3 C -0.200 4.200 4 O -0.153 6.153 5 N -0.301 5.301 6 C 0.420 3.580 7 O -0.477 6.477 8 N -0.315 5.315 9 C 0.108 3.892 10 C -0.214 4.214 11 C -0.069 4.069 12 C -0.220 4.220 13 C 0.092 3.908 14 O -0.146 6.146 15 C -0.473 4.473 16 H 0.101 0.899 17 C -0.187 4.187 18 N -0.563 5.563 19 Si 0.791 3.209 20 H -0.193 1.193 21 H -0.194 1.194 22 H -0.185 1.185 23 C -0.274 4.274 24 H 0.113 0.887 25 H 0.074 0.926 26 H 0.073 0.927 27 H 0.118 0.882 28 H 0.082 0.918 29 H 0.125 0.875 30 H 0.078 0.922 31 H 0.267 0.733 32 H 0.260 0.740 33 H 0.146 0.854 34 H 0.177 0.823 35 H 0.154 0.846 36 H 0.094 0.906 37 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 4.745 18.394 -8.424 20.780 hybrid contribution -0.798 -0.910 -0.830 1.468 sum 3.948 17.484 -9.254 20.172 Atomic orbital electron populations 1.22367 0.94551 1.02838 1.03664 1.23040 0.95199 0.94818 0.88307 1.21859 1.02107 0.91857 1.04196 1.90638 1.88818 0.99062 1.36802 1.45817 1.72444 0.96096 1.15742 1.15346 0.78645 0.80914 0.83086 1.90934 1.56035 1.72305 1.28415 1.42132 1.64645 1.03755 1.20958 1.17143 0.92495 0.89420 0.90137 1.20948 0.98531 1.01446 1.00447 1.20965 0.98484 0.91671 0.95829 1.20549 1.00072 0.97965 1.03454 1.19314 0.93404 0.84685 0.93401 1.83563 1.43335 1.27675 1.60053 1.20686 1.02971 0.98178 1.25492 0.89917 1.25236 0.96605 0.98246 0.98573 1.69720 1.24290 1.20320 1.41961 0.85248 0.79722 0.77379 0.78598 1.19305 1.19411 1.18454 1.20841 1.06212 0.96374 1.03964 0.88726 0.92611 0.92734 0.88249 0.91771 0.87489 0.92209 0.73325 0.73976 0.85372 0.82288 0.84638 0.90628 0.85906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.18 9.56 71.98 0.69 -1.49 16 2 C 0.04 0.60 3.47 30.59 0.11 0.71 16 3 C -0.14 -1.54 9.56 71.98 0.69 -0.85 16 4 O -0.15 -3.59 10.75 -21.43 -0.23 -3.82 16 5 N -0.60 -13.46 6.38 -184.74 -1.18 -14.64 16 6 C 0.72 22.57 8.44 179.05 1.51 24.08 16 7 O -0.60 -24.43 14.45 13.36 0.19 -24.23 16 8 N -0.66 -19.62 5.35 -317.24 -1.70 -21.32 16 9 C 0.20 7.57 6.27 38.13 0.24 7.80 16 10 C -0.19 -6.96 8.65 22.42 0.19 -6.77 16 11 C -0.05 -1.71 10.03 22.23 0.22 -1.48 16 12 C -0.20 -7.75 9.99 22.41 0.22 -7.53 16 13 C 0.14 6.57 6.64 22.56 0.15 6.72 16 14 O -0.24 -12.71 8.58 -22.82 -0.20 -12.90 16 15 C -0.40 -22.79 9.90 67.92 0.67 -22.11 16 16 H 0.08 4.93 5.53 -2.91 -0.02 4.91 16 17 C 0.01 0.68 5.49 84.83 0.47 1.14 16 18 N -0.92 -53.94 13.96 21.61 0.30 -53.64 16 19 Si 0.97 44.67 28.62 68.60 1.96 46.64 16 20 H -0.27 -12.00 7.11 99.48 0.71 -11.30 16 21 H -0.27 -11.64 7.11 99.48 0.71 -10.94 16 22 H -0.26 -11.94 7.11 99.48 0.71 -11.24 16 23 C -0.25 -10.89 9.04 22.51 0.20 -10.69 16 24 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 25 H 0.05 0.74 8.14 -2.39 -0.02 0.73 16 26 H 0.05 0.83 8.14 -2.38 -0.02 0.81 16 27 H 0.10 0.90 7.94 -2.39 -0.02 0.88 16 28 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 29 H 0.11 0.56 8.14 -2.39 -0.02 0.54 16 30 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.42 5.83 8.45 -92.71 -0.78 5.05 16 32 H 0.42 9.35 8.83 -92.71 -0.82 8.54 16 33 H 0.13 4.61 6.43 -2.91 -0.02 4.59 16 34 H 0.16 4.03 8.06 -2.91 -0.02 4.00 16 35 H 0.14 4.72 8.06 -2.91 -0.02 4.69 16 36 H 0.28 15.28 8.31 -92.70 -0.77 14.51 16 37 H 0.12 5.59 5.71 -2.91 -0.02 5.57 16 Total: -1.00 -74.92 322.65 4.04 -70.89 By element: Atomic # 1 Polarization: 23.98 SS G_CDS: -0.49 Total: 23.50 kcal Atomic # 6 Polarization: -15.83 SS G_CDS: 5.37 Total: -10.46 kcal Atomic # 7 Polarization: -87.03 SS G_CDS: -2.57 Total: -89.60 kcal Atomic # 8 Polarization: -40.73 SS G_CDS: -0.23 Total: -40.96 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 1.96 Total: 46.64 kcal Total: -74.92 4.04 -70.89 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000296591922.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.813 kcal (2) G-P(sol) polarization free energy of solvation -74.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.887 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds