Wall clock time and date at job start Tue Mar 31 2020 02:13:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.45193 * 109.47289 * 2 1 4 4 C 1.34768 * 116.99854 * 179.97438 * 3 2 1 5 5 O 1.21531 * 120.00217 * 359.97438 * 4 3 2 6 6 C 1.47256 * 119.99546 * 180.02562 * 4 3 2 7 7 C 1.38308 * 126.46529 * 270.01980 * 6 4 3 8 8 C 1.50703 * 125.80004 * 359.97438 * 7 6 4 9 9 N 1.34268 * 108.39918 * 180.24684 * 7 6 4 10 10 H 0.96996 * 125.38331 * 179.73915 * 9 7 6 11 11 C 1.37802 * 109.22753 * 359.57471 * 9 7 6 12 12 C 1.46691 * 125.84671 * 180.17602 * 11 9 7 13 13 O 1.21726 * 119.99935 * 180.29797 * 12 11 9 14 14 N 1.34778 * 120.00056 * 0.29581 * 12 11 9 15 15 C 1.36869 * 120.00058 * 180.02562 * 14 12 11 16 16 H 1.08003 * 119.99971 * 359.97438 * 15 14 12 17 17 C 1.39016 * 120.00318 * 180.02562 * 15 14 12 18 18 N 1.31399 * 119.99447 * 359.97438 * 17 15 14 19 19 Si 1.86792 * 120.00337 * 179.97438 * 17 15 14 20 20 H 1.48505 * 109.47051 * 90.00153 * 19 17 15 21 21 H 1.48497 * 109.47184 * 209.99525 * 19 17 15 22 22 H 1.48493 * 109.47465 * 330.00117 * 19 17 15 23 23 C 1.36445 * 108.30813 * 0.43071 * 11 9 7 24 24 C 1.50693 * 126.50443 * 179.76738 * 23 11 9 25 25 H 1.09002 * 109.47382 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47265 * 300.00243 * 1 2 3 27 27 H 1.09003 * 109.46807 * 60.00176 * 1 2 3 28 28 H 1.08997 * 109.47265 * 239.99757 * 2 1 3 29 29 H 1.09005 * 109.46636 * 120.00336 * 2 1 3 30 30 H 1.09002 * 109.47152 * 89.99816 * 8 7 6 31 31 H 1.09001 * 109.46980 * 329.99916 * 8 7 6 32 32 H 1.09004 * 109.47113 * 209.99897 * 8 7 6 33 33 H 0.97003 * 119.99572 * 359.97438 * 14 12 11 34 34 H 0.97000 * 119.99433 * 180.02562 * 18 17 15 35 35 H 1.08999 * 109.47408 * 269.97838 * 24 23 11 36 36 H 1.09006 * 109.47057 * 29.97414 * 24 23 11 37 37 H 1.08994 * 109.47540 * 149.97006 * 24 23 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3501 1.5454 0.0005 5 8 4.0904 0.5816 0.0015 6 6 3.9129 2.9062 0.0011 7 6 4.2271 3.6662 -1.1108 8 6 4.0522 3.2424 -2.5464 9 7 4.7200 4.8435 -0.6939 10 1 5.0223 5.5620 -1.2712 11 6 4.7251 4.8711 0.6838 12 6 5.1857 5.9856 1.5191 13 8 5.1475 5.8933 2.7322 14 7 5.6512 7.1118 0.9432 15 6 6.0814 8.1514 1.7226 16 1 6.0475 8.0695 2.7990 17 6 6.5610 9.3132 1.1287 18 7 6.6018 9.4130 -0.1809 19 14 7.1475 10.7324 2.1923 20 1 8.5970 10.5740 2.4737 21 1 6.9193 12.0139 1.4775 22 1 6.3928 10.7375 3.4711 23 6 4.2337 3.6820 1.1381 24 6 4.0644 3.2737 2.5788 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 1.8934 -0.5138 -0.8899 29 1 1.8933 -0.5139 0.8900 30 1 3.0603 3.5327 -2.8927 31 1 4.1612 2.1605 -2.6217 32 1 4.8088 3.7276 -3.1632 33 1 5.6820 7.1851 -0.0235 34 1 6.9369 10.2235 -0.5952 35 1 4.9732 2.7826 2.9265 36 1 3.8739 4.1580 3.1870 37 1 3.2236 2.5855 2.6650 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299556798.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:13:40 Heat of formation + Delta-G solvation = -117.537337 kcal Electronic energy + Delta-G solvation = -21579.713267 eV Core-core repulsion = 18128.427640 eV Total energy + Delta-G solvation = -3451.285627 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.72803 -41.09606 -39.69080 -37.55140 -36.21722 -34.11535 -33.45870 -32.85655 -32.15109 -29.14714 -28.16720 -26.57074 -25.14120 -23.35092 -22.34184 -20.98908 -20.54662 -19.91209 -19.05018 -18.39932 -17.49494 -16.95176 -16.78892 -16.30115 -16.10244 -15.85629 -15.07591 -14.99990 -14.64099 -14.37971 -14.28058 -14.03366 -13.75683 -13.59807 -13.54929 -13.21987 -13.14527 -12.95473 -12.89057 -12.56309 -12.47538 -12.45468 -12.13259 -11.75241 -11.61634 -11.48447 -10.58629 -10.15372 -9.95370 -9.16758 -8.56950 -6.01922 0.50003 1.01701 1.06156 1.41871 1.42994 1.54422 1.76211 2.11963 2.26510 2.40177 3.05380 3.21870 3.69924 3.85365 3.98481 4.05412 4.12212 4.14730 4.38154 4.41916 4.47842 4.67758 4.70533 4.77175 4.86304 4.96359 4.96829 5.03055 5.13392 5.24228 5.34914 5.43992 5.52910 5.67058 5.95199 6.33609 6.47735 6.70442 7.00193 7.38012 7.91712 8.60434 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.032380 B = 0.003775 C = 0.003554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 864.525923 B = 7414.994759 C = 7876.452598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.048 3.952 3 O -0.354 6.354 4 C 0.565 3.435 5 O -0.528 6.528 6 C -0.244 4.244 7 C 0.117 3.883 8 C -0.093 4.093 9 N -0.513 5.513 10 H 0.432 0.568 11 C -0.043 4.043 12 C 0.503 3.497 13 O -0.612 6.612 14 N -0.557 5.557 15 C -0.335 4.335 16 H 0.086 0.914 17 C -0.008 4.008 18 N -0.913 5.913 19 Si 0.997 3.003 20 H -0.270 1.270 21 H -0.269 1.269 22 H -0.271 1.271 23 C -0.064 4.064 24 C -0.083 4.083 25 H 0.104 0.896 26 H 0.063 0.937 27 H 0.070 0.930 28 H 0.077 0.923 29 H 0.067 0.933 30 H 0.106 0.894 31 H 0.086 0.914 32 H 0.100 0.900 33 H 0.394 0.606 34 H 0.282 0.718 35 H 0.065 0.935 36 H 0.070 0.930 37 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.604 -13.406 -7.936 18.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.025 4.025 3 O -0.270 6.270 4 C 0.409 3.591 5 O -0.418 6.418 6 C -0.251 4.251 7 C -0.006 4.006 8 C -0.150 4.150 9 N -0.109 5.109 10 H 0.273 0.727 11 C -0.155 4.155 12 C 0.292 3.708 13 O -0.499 6.499 14 N -0.191 5.191 15 C -0.464 4.464 16 H 0.104 0.896 17 C -0.209 4.209 18 N -0.553 5.553 19 Si 0.820 3.180 20 H -0.196 1.196 21 H -0.193 1.193 22 H -0.196 1.196 23 C -0.072 4.072 24 C -0.140 4.140 25 H 0.122 0.878 26 H 0.082 0.918 27 H 0.089 0.911 28 H 0.096 0.904 29 H 0.086 0.914 30 H 0.125 0.875 31 H 0.105 0.895 32 H 0.118 0.882 33 H 0.227 0.773 34 H 0.091 0.909 35 H 0.084 0.916 36 H 0.089 0.911 37 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -9.308 -13.427 -7.309 17.898 hybrid contribution 0.704 1.010 -0.062 1.232 sum -8.604 -12.417 -7.372 16.810 Atomic orbital electron populations 1.21831 0.90361 1.04453 1.03645 1.23398 0.97163 0.78993 1.02941 1.86706 1.23072 1.33946 1.83307 1.20118 0.80554 0.88068 0.70373 1.90804 1.61302 1.43105 1.46568 1.18323 1.17799 0.95165 0.93844 1.21099 0.97890 0.84747 0.96854 1.20708 1.05390 1.03114 0.85743 1.41610 1.48301 1.15169 1.05854 0.72684 1.19841 1.15027 0.98024 0.82585 1.17107 0.83901 0.82560 0.87243 1.90605 1.62402 1.82350 1.14580 1.41724 1.55065 1.13091 1.09268 1.19745 1.40491 0.93865 0.92329 0.89588 1.26104 0.96544 1.00779 0.97473 1.69625 1.45731 1.30187 1.09754 0.84864 0.78619 0.76662 0.77869 1.19577 1.19333 1.19557 1.19602 1.00447 0.91416 0.95687 1.20279 1.01486 1.01763 0.90522 0.87791 0.91783 0.91083 0.90428 0.91409 0.87544 0.89539 0.88176 0.77251 0.90874 0.91632 0.91144 0.91074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.87 10.29 71.98 0.74 -1.13 16 2 C 0.05 0.93 6.20 71.98 0.45 1.37 16 3 O -0.35 -9.50 10.23 -56.79 -0.58 -10.08 16 4 C 0.56 17.81 7.14 70.19 0.50 18.31 16 5 O -0.53 -18.56 16.90 19.73 0.33 -18.22 16 6 C -0.24 -8.20 6.01 -20.13 -0.12 -8.32 16 7 C 0.12 3.29 7.21 42.20 0.30 3.60 16 8 C -0.09 -1.61 10.24 71.24 0.73 -0.88 16 9 N -0.51 -16.18 5.91 -171.62 -1.01 -17.19 16 10 H 0.43 11.63 8.13 -92.71 -0.75 10.88 16 11 C -0.04 -1.77 6.99 40.00 0.28 -1.49 16 12 C 0.50 25.28 7.74 86.45 0.67 25.95 16 13 O -0.61 -34.63 14.26 -4.43 -0.06 -34.69 16 14 N -0.56 -28.43 5.27 -310.61 -1.64 -30.07 16 15 C -0.33 -18.63 9.68 84.09 0.81 -17.82 16 16 H 0.09 5.08 7.15 -2.91 -0.02 5.06 16 17 C -0.01 -0.41 5.50 84.94 0.47 0.05 16 18 N -0.91 -46.99 13.05 21.68 0.28 -46.71 16 19 Si 1.00 41.50 29.55 68.60 2.03 43.53 16 20 H -0.27 -10.97 7.11 99.48 0.71 -10.27 16 21 H -0.27 -10.53 7.11 99.48 0.71 -9.83 16 22 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 23 C -0.06 -2.50 6.21 -19.52 -0.12 -2.62 16 24 C -0.08 -3.13 9.63 71.23 0.69 -2.45 16 25 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 26 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 27 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 28 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 29 H 0.07 1.32 8.14 -2.38 -0.02 1.30 16 30 H 0.11 1.44 8.14 -2.39 -0.02 1.42 16 31 H 0.09 1.48 7.93 -2.39 -0.02 1.46 16 32 H 0.10 1.31 8.14 -2.38 -0.02 1.29 16 33 H 0.39 18.51 6.97 -92.71 -0.65 17.86 16 34 H 0.28 13.50 8.31 -92.71 -0.77 12.73 16 35 H 0.07 2.41 8.14 -2.39 -0.02 2.40 16 36 H 0.07 2.94 6.41 -2.38 -0.02 2.93 16 37 H 0.07 2.30 8.05 -2.39 -0.02 2.28 16 Total: -1.00 -70.63 327.40 4.46 -66.17 By element: Atomic # 1 Polarization: 32.96 SS G_CDS: -0.28 Total: 32.68 kcal Atomic # 6 Polarization: 9.19 SS G_CDS: 5.39 Total: 14.58 kcal Atomic # 7 Polarization: -91.60 SS G_CDS: -2.37 Total: -93.97 kcal Atomic # 8 Polarization: -62.68 SS G_CDS: -0.31 Total: -62.99 kcal Atomic # 14 Polarization: 41.50 SS G_CDS: 2.03 Total: 43.53 kcal Total: -70.63 4.46 -66.17 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299556798.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.365 kcal (2) G-P(sol) polarization free energy of solvation -70.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.172 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds