Wall clock time and date at job start Tue Mar 31 2020 02:09:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46500 * 109.47120 * 2 1 4 4 C 1.36935 * 119.99914 * 270.33948 * 3 2 1 5 5 H 1.07998 * 120.00501 * 325.94078 * 4 3 2 6 6 C 1.38814 * 119.99716 * 145.93490 * 4 3 2 7 7 N 1.31622 * 120.00245 * 337.09419 * 6 4 3 8 8 Si 1.86798 * 119.99972 * 157.09518 * 6 4 3 9 9 H 1.48504 * 109.47120 * 0.02562 * 8 6 4 10 10 H 1.48504 * 109.47219 * 119.99908 * 8 6 4 11 11 H 1.48498 * 109.47243 * 240.00048 * 8 6 4 12 12 C 1.46505 * 120.00248 * 90.34423 * 3 2 1 13 13 C 1.53005 * 109.47014 * 89.99540 * 12 3 2 14 14 O 1.42905 * 109.46481 * 65.00458 * 13 12 3 15 15 C 1.35901 * 116.99149 * 179.97438 * 14 13 12 16 16 C 1.38752 * 120.06111 * 359.72034 * 15 14 13 17 17 C 1.38124 * 119.94535 * 179.78966 * 16 15 14 18 18 C 1.38293 * 120.05263 * 0.48827 * 17 16 15 19 19 C 1.38237 * 120.11244 * 359.74419 * 18 17 16 20 20 N 1.48005 * 119.96846 * 179.97438 * 19 18 17 21 21 O 1.21801 * 119.99501 * 180.02562 * 20 19 18 22 22 O 1.21795 * 120.00363 * 0.02562 * 20 19 18 23 23 C 1.38164 * 120.05652 * 0.02562 * 19 18 17 24 24 H 1.08992 * 109.47343 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47556 * 300.00744 * 1 2 3 26 26 H 1.08999 * 109.47057 * 60.00081 * 1 2 3 27 27 H 1.08997 * 109.47653 * 239.99788 * 2 1 3 28 28 H 1.09006 * 109.46871 * 119.99533 * 2 1 3 29 29 H 0.97002 * 119.99768 * 179.97438 * 7 6 4 30 30 H 1.08999 * 109.46804 * 330.00294 * 12 3 2 31 31 H 1.08993 * 109.47220 * 210.00267 * 12 3 2 32 32 H 1.08999 * 109.46516 * 185.00006 * 13 12 3 33 33 H 1.08993 * 109.47372 * 305.00319 * 13 12 3 34 34 H 1.08002 * 120.02707 * 0.02562 * 16 15 14 35 35 H 1.08000 * 119.97302 * 180.23318 * 17 16 15 36 36 H 1.08006 * 119.94051 * 179.76823 * 18 17 16 37 37 H 1.08008 * 120.02524 * 180.02562 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2399 2.0291 -1.1859 5 1 2.5953 1.4781 -2.0441 6 6 2.0076 3.3940 -1.2850 7 7 1.1809 3.9835 -0.4474 8 14 2.8682 4.3943 -2.6071 9 1 3.7388 3.5024 -3.4146 10 1 1.8539 5.0260 -3.4889 11 1 3.6957 5.4497 -1.9694 12 6 2.2697 2.0694 1.2687 13 6 3.7172 1.8280 1.7018 14 8 4.6036 2.4357 0.7599 15 6 5.9358 2.3138 0.9993 16 6 6.3807 1.6285 2.1207 17 6 7.7353 1.5023 2.3594 18 6 8.6477 2.0671 1.4871 19 6 8.2070 2.7545 0.3716 20 7 9.1863 3.3581 -0.5595 21 8 8.7986 3.9643 -1.5422 22 8 10.3799 3.2487 -0.3432 23 6 6.8532 2.8794 0.1259 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 1.8934 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 1.0189 4.9374 -0.5165 30 1 1.5932 1.6837 2.0314 31 1 2.1019 3.1388 1.1415 32 1 3.8791 2.2646 2.6873 33 1 3.9101 0.7561 1.7430 34 1 5.6684 1.1907 2.8045 35 1 8.0821 0.9657 3.2301 36 1 9.7065 1.9705 1.6774 37 1 6.5094 3.4163 -0.7459 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299584576.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:09:22 Heat of formation + Delta-G solvation = 7.879638 kcal Electronic energy + Delta-G solvation = -21948.192131 eV Core-core repulsion = 18502.344992 eV Total energy + Delta-G solvation = -3445.847139 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -42.09801 -40.07309 -37.58497 -36.48285 -35.82221 -31.92555 -31.83173 -31.04641 -29.57976 -27.80113 -26.52732 -24.20236 -23.05756 -22.76982 -21.68515 -20.06272 -19.26964 -18.58327 -17.45704 -17.01854 -16.84889 -16.29077 -15.76544 -15.44529 -14.74283 -14.23398 -13.94198 -13.79599 -13.34299 -12.92744 -12.58794 -12.37628 -12.14474 -11.76880 -11.51709 -11.38828 -11.29346 -11.10673 -11.06323 -10.95337 -10.89983 -10.64652 -10.28770 -10.02710 -9.92156 -9.82254 -9.64115 -8.52659 -8.35241 -6.70902 -5.82673 -3.35233 -0.11572 1.06005 1.43257 1.44350 3.33824 3.39129 3.45486 3.50360 3.52817 4.42177 4.49504 4.68953 4.72121 4.86452 5.00303 5.19565 5.35445 5.44674 5.51901 5.75489 5.80674 5.90058 5.97910 5.99611 6.04173 6.14379 6.34184 6.41620 6.47487 6.52601 6.58662 6.87821 7.15485 7.44815 7.66823 7.72276 7.80507 8.45287 9.12048 9.77195 10.30009 11.19491 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.017227 B = 0.005632 C = 0.004567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1624.958763 B = 4970.480459 C = 6129.387184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.140 3.860 3 N -0.580 5.580 4 C -0.245 4.245 5 H 0.061 0.939 6 C 0.016 3.984 7 N -0.892 5.892 8 Si 0.891 3.109 9 H -0.275 1.275 10 H -0.292 1.292 11 H -0.285 1.285 12 C 0.137 3.863 13 C 0.040 3.960 14 O -0.260 6.260 15 C 0.153 3.847 16 C -0.171 4.171 17 C -0.077 4.077 18 C -0.114 4.114 19 C -0.004 4.004 20 N 0.030 4.970 21 O -0.156 6.156 22 O -0.165 6.165 23 C -0.100 4.100 24 H 0.030 0.970 25 H 0.042 0.958 26 H 0.055 0.945 27 H 0.043 0.957 28 H 0.030 0.970 29 H 0.254 0.746 30 H 0.052 0.948 31 H 0.113 0.887 32 H 0.047 0.953 33 H 0.048 0.952 34 H 0.145 0.855 35 H 0.145 0.855 36 H 0.148 0.852 37 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.057 -5.773 8.456 13.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.014 3.986 3 N -0.300 5.300 4 C -0.374 4.374 5 H 0.079 0.921 6 C -0.184 4.184 7 N -0.535 5.535 8 Si 0.721 3.279 9 H -0.200 1.200 10 H -0.219 1.219 11 H -0.212 1.212 12 C 0.009 3.991 13 C -0.038 4.038 14 O -0.170 6.170 15 C 0.104 3.896 16 C -0.190 4.190 17 C -0.095 4.095 18 C -0.134 4.134 19 C -0.087 4.087 20 N 0.549 4.451 21 O -0.373 6.373 22 O -0.380 6.380 23 C -0.119 4.119 24 H 0.049 0.951 25 H 0.062 0.938 26 H 0.075 0.925 27 H 0.061 0.939 28 H 0.049 0.951 29 H 0.064 0.936 30 H 0.070 0.930 31 H 0.130 0.870 32 H 0.065 0.935 33 H 0.066 0.934 34 H 0.162 0.838 35 H 0.162 0.838 36 H 0.166 0.834 37 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 8.394 -5.821 8.730 13.437 hybrid contribution 0.633 0.618 -0.649 1.097 sum 9.027 -5.202 8.082 13.186 Atomic orbital electron populations 1.22277 0.99546 0.98434 1.01997 1.20906 0.92103 0.87529 0.98103 1.43852 1.74153 1.09817 1.02224 1.18980 1.37267 0.91114 0.90046 0.92145 1.24967 0.96993 0.98368 0.98025 1.69937 1.33738 1.10295 1.39567 0.86412 0.79554 0.80465 0.81484 1.19960 1.21908 1.21182 1.21139 0.86813 1.03792 0.87316 1.24163 0.93789 0.95783 0.90046 1.86578 1.10007 1.70933 1.49493 1.18998 0.86428 0.92419 0.91785 1.21783 0.97274 1.01635 0.98280 1.20901 0.91789 0.98065 0.98784 1.20797 1.01983 0.97882 0.92707 1.20700 0.88456 1.05363 0.94207 1.43609 1.01724 0.98809 1.00939 1.94580 1.84554 1.40089 1.18119 1.94492 0.99356 1.64280 1.79868 1.20185 0.88865 1.01288 1.01597 0.95065 0.93841 0.92543 0.93881 0.95136 0.93645 0.93020 0.86967 0.93525 0.93373 0.83758 0.83773 0.83388 0.82298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 36. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.05 10.24 37.16 0.38 -2.67 16 2 C 0.14 2.73 6.39 -4.04 -0.03 2.71 16 3 N -0.58 -13.33 2.43 -173.24 -0.42 -13.76 16 4 C -0.24 -6.39 8.99 -15.06 -0.14 -6.52 16 5 H 0.06 1.62 7.93 -52.49 -0.42 1.21 16 6 C 0.02 0.43 4.95 -17.43 -0.09 0.34 16 7 N -0.89 -24.66 11.32 55.49 0.63 -24.04 16 8 Si 0.89 21.77 29.61 -169.99 -5.03 16.73 16 9 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 10 H -0.29 -7.19 7.11 56.52 0.40 -6.78 16 11 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 12 C 0.14 2.85 5.72 -4.04 -0.02 2.83 16 13 C 0.04 0.68 5.08 37.16 0.19 0.87 16 14 O -0.26 -5.05 9.61 -19.43 -0.19 -5.24 16 15 C 0.15 2.47 6.69 -39.22 -0.26 2.21 16 16 C -0.17 -2.10 9.04 -39.43 -0.36 -2.45 16 17 C -0.08 -0.78 10.04 -39.60 -0.40 -1.18 16 18 C -0.11 -1.36 9.55 -39.56 -0.38 -1.73 16 19 C 0.00 -0.07 6.85 -79.98 -0.55 -0.62 16 20 N 0.03 0.49 4.45 33.95 0.15 0.64 16 21 O -0.16 -2.82 18.45 -29.46 -0.54 -3.36 16 22 O -0.16 -2.64 18.44 -29.46 -0.54 -3.18 16 23 C -0.10 -1.65 9.49 -39.43 -0.37 -2.02 16 24 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 25 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 26 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 27 H 0.04 0.85 8.04 -51.93 -0.42 0.43 16 28 H 0.03 0.52 8.07 -51.93 -0.42 0.10 16 29 H 0.25 6.84 8.31 -40.82 -0.34 6.50 16 30 H 0.05 0.98 8.07 -51.93 -0.42 0.56 16 31 H 0.11 2.76 5.32 -51.93 -0.28 2.48 16 32 H 0.05 0.66 7.65 -51.93 -0.40 0.26 16 33 H 0.05 0.75 7.67 -51.93 -0.40 0.35 16 34 H 0.14 1.48 6.30 -52.49 -0.33 1.15 16 35 H 0.14 0.95 8.06 -52.49 -0.42 0.52 16 36 H 0.15 1.46 7.61 -52.48 -0.40 1.06 16 37 H 0.16 2.83 7.61 -52.48 -0.40 2.43 16 LS Contribution 323.72 15.07 4.88 4.88 Total: -1.00 -29.19 323.72 -7.79 -36.97 By element: Atomic # 1 Polarization: 3.28 SS G_CDS: -4.70 Total: -1.42 kcal Atomic # 6 Polarization: -6.23 SS G_CDS: -2.02 Total: -8.25 kcal Atomic # 7 Polarization: -37.50 SS G_CDS: 0.36 Total: -37.15 kcal Atomic # 8 Polarization: -10.50 SS G_CDS: -1.27 Total: -11.78 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.03 Total: 16.73 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -29.19 -7.79 -36.97 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299584576.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.854 kcal (2) G-P(sol) polarization free energy of solvation -29.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.974 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds