Wall clock time and date at job start Tue Mar 31 2020 01:59:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08999 * 109.47205 * 2 1 4 4 C 1.50699 * 109.46780 * 239.99524 * 2 1 3 5 5 H 1.08003 * 120.00074 * 245.45943 * 4 2 1 6 6 C 1.37878 * 120.00086 * 65.46674 * 4 2 1 7 7 N 1.31512 * 119.99616 * 9.54906 * 6 4 2 8 8 Si 1.86800 * 119.99945 * 189.55755 * 6 4 2 9 9 H 1.48507 * 109.46935 * 84.99006 * 8 6 4 10 10 H 1.48497 * 109.46967 * 204.98967 * 8 6 4 11 11 H 1.48494 * 109.47327 * 324.99218 * 8 6 4 12 12 N 1.46505 * 109.46905 * 119.99749 * 2 1 3 13 13 C 1.34773 * 120.00255 * 274.71989 * 12 2 1 14 14 O 1.21618 * 119.99663 * 0.28149 * 13 12 2 15 15 C 1.47415 * 120.00335 * 180.27528 * 13 12 2 16 16 N 1.36064 * 126.44860 * 0.02909 * 15 13 12 17 17 C 1.29931 * 108.47996 * 179.97438 * 16 15 13 18 18 O 1.34055 * 109.24346 * 359.97438 * 17 16 15 19 19 C 1.34258 * 108.22425 * 359.77394 * 18 17 16 20 20 C 1.50695 * 126.52534 * 180.23238 * 19 18 17 21 21 H 1.08997 * 109.82278 * 195.86139 * 20 19 18 22 22 C 1.54382 * 109.83441 * 74.97087 * 20 19 18 23 23 C 1.55451 * 102.18482 * 219.18409 * 22 20 19 24 24 C 1.54944 * 100.99090 * 34.03676 * 23 22 20 25 25 O 1.43238 * 109.82974 * 316.73926 * 20 19 18 26 26 H 1.09001 * 109.47380 * 183.68296 * 1 2 3 27 27 H 1.09003 * 109.46807 * 303.67912 * 1 2 3 28 28 H 1.08999 * 109.47116 * 63.67795 * 1 2 3 29 29 H 0.97002 * 119.99634 * 180.02562 * 7 6 4 30 30 H 0.97000 * 120.00053 * 94.99855 * 12 2 1 31 31 H 1.08007 * 125.38269 * 180.02562 * 17 16 15 32 32 H 1.09002 * 110.84329 * 337.31810 * 22 20 19 33 33 H 1.08994 * 110.84923 * 100.93779 * 22 20 19 34 34 H 1.09000 * 111.05559 * 276.11945 * 23 22 20 35 35 H 1.08996 * 111.18160 * 152.00959 * 23 22 20 36 36 H 1.09003 * 110.30985 * 204.68749 * 24 23 22 37 37 H 1.09003 * 110.30940 * 82.52387 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.5785 -1.6372 -1.1337 6 6 1.7946 -0.1775 -2.4796 7 7 1.2993 1.0354 -2.5935 8 14 2.1759 -1.1783 -4.0101 9 1 1.0238 -2.0613 -4.3239 10 1 2.4226 -0.2618 -5.1521 11 1 3.3843 -2.0076 -3.7709 12 7 2.0183 -0.6906 1.1963 13 6 2.1524 -0.0169 2.3558 14 8 1.8632 1.1631 2.4103 15 6 2.6495 -0.7103 3.5580 16 7 3.0100 -2.0194 3.6451 17 6 3.3951 -2.2604 4.8624 18 8 3.2984 -1.1368 5.5870 19 6 2.8404 -0.1599 4.7880 20 6 2.5830 1.2724 5.1794 21 1 1.9628 1.7560 4.4249 22 6 3.9231 2.0264 5.3178 23 6 3.6679 2.9235 6.5614 24 6 2.7507 2.0035 7.4060 25 8 1.9253 1.3179 6.4510 26 1 -0.3634 -1.0255 0.0660 27 1 -0.3633 0.5699 0.8552 28 1 -0.3633 0.4557 -0.9211 29 1 1.1317 1.4103 -3.4723 30 1 2.2490 -1.6318 1.1528 31 1 3.7395 -3.2151 5.2319 32 1 4.7420 1.3312 5.5027 33 1 4.1199 2.6331 4.4339 34 1 3.1526 3.8425 6.2823 35 1 4.5974 3.1413 7.0873 36 1 2.1348 2.5990 8.0799 37 1 3.3489 1.2888 7.9713 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000332430230.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:59:13 Heat of formation + Delta-G solvation = -64.193947 kcal Electronic energy + Delta-G solvation = -21996.349380 eV Core-core repulsion = 18547.376896 eV Total energy + Delta-G solvation = -3448.972484 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -43.34205 -39.47163 -38.71259 -34.85243 -34.67059 -32.44718 -32.28250 -31.56208 -29.26213 -27.97831 -25.21484 -24.10053 -23.38666 -21.98352 -21.52814 -20.61339 -19.60000 -18.15944 -16.89524 -16.69944 -16.65963 -16.06430 -15.57290 -15.36386 -14.99382 -14.19710 -14.01563 -13.92289 -13.76487 -13.23069 -13.00730 -12.36598 -12.01838 -11.92549 -11.83433 -11.49880 -11.27425 -11.13535 -11.01880 -10.97363 -10.75207 -10.70871 -10.34887 -10.27669 -9.93326 -9.30616 -9.10559 -8.84412 -8.48713 -7.93718 -6.13055 -4.17959 1.20969 2.26496 2.60826 3.27746 3.34011 3.36121 3.62069 3.86983 3.93090 4.19459 4.30958 4.39851 4.45669 4.67396 4.93774 5.04067 5.21033 5.24572 5.32997 5.46385 5.51432 5.53466 5.67803 5.73049 5.79523 6.07710 6.25274 6.75868 6.77677 6.91337 7.08185 7.39009 7.45114 7.63026 7.69915 7.86274 8.06666 8.65802 8.78321 9.05961 9.47494 10.95588 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.027392 B = 0.004149 C = 0.003841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1021.943726 B = 6746.376173 C = 7288.499911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.261 3.739 3 H 0.059 0.941 4 C -0.536 4.536 5 H 0.062 0.938 6 C 0.069 3.931 7 N -0.882 5.882 8 Si 0.899 3.101 9 H -0.278 1.278 10 H -0.286 1.286 11 H -0.274 1.274 12 N -0.684 5.684 13 C 0.584 3.416 14 O -0.550 6.550 15 C -0.049 4.049 16 N -0.460 5.460 17 C 0.167 3.833 18 O -0.195 6.195 19 C 0.016 3.984 20 C 0.157 3.843 21 H 0.149 0.851 22 C -0.146 4.146 23 C -0.154 4.154 24 C 0.046 3.954 25 O -0.369 6.369 26 H 0.030 0.970 27 H 0.021 0.979 28 H 0.074 0.926 29 H 0.265 0.735 30 H 0.398 0.602 31 H 0.253 0.747 32 H 0.077 0.923 33 H 0.098 0.902 34 H 0.085 0.915 35 H 0.086 0.914 36 H 0.089 0.911 37 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.552 -1.076 18.506 19.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.159 3.841 3 H 0.076 0.924 4 C -0.574 4.574 5 H 0.081 0.919 6 C -0.134 4.134 7 N -0.518 5.518 8 Si 0.726 3.274 9 H -0.204 1.204 10 H -0.212 1.212 11 H -0.199 1.199 12 N -0.330 5.330 13 C 0.368 3.632 14 O -0.430 6.430 15 C -0.169 4.169 16 N -0.189 5.189 17 C -0.062 4.062 18 O -0.081 6.081 19 C -0.041 4.041 20 C 0.099 3.901 21 H 0.166 0.834 22 C -0.184 4.184 23 C -0.192 4.192 24 C -0.030 4.030 25 O -0.288 6.288 26 H 0.049 0.951 27 H 0.040 0.960 28 H 0.093 0.907 29 H 0.074 0.926 30 H 0.232 0.768 31 H 0.268 0.732 32 H 0.096 0.904 33 H 0.116 0.884 34 H 0.103 0.897 35 H 0.104 0.896 36 H 0.107 0.893 37 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 5.060 -0.628 17.913 18.625 hybrid contribution 0.612 -0.850 -0.368 1.110 sum 5.673 -1.478 17.545 18.499 Atomic orbital electron populations 1.22019 0.98566 0.98812 1.00638 1.18865 0.90781 0.94614 0.79796 0.92367 1.21170 1.37198 1.08743 0.90321 0.91944 1.24875 0.94936 0.94635 0.99000 1.69983 1.43885 1.13735 1.24233 0.86504 0.78787 0.79941 0.82144 1.20388 1.21174 1.19866 1.46393 1.62772 1.14078 1.09710 1.16786 0.78680 0.85871 0.81912 1.90694 1.53154 1.14983 1.84214 1.21987 1.08389 0.90314 0.96258 1.70799 1.14045 1.14429 1.19617 1.28025 1.01221 0.91256 0.85669 1.84349 1.63896 1.18646 1.41239 1.24127 0.99151 0.91705 0.89127 1.21831 0.95677 0.84368 0.88240 0.83430 1.23210 0.96339 0.98792 1.00010 1.23324 1.00793 0.99212 0.95837 1.23460 0.93297 0.94167 0.92067 1.88539 1.42621 1.78238 1.19388 0.95125 0.96017 0.90698 0.92553 0.76810 0.73153 0.90394 0.88381 0.89670 0.89554 0.89260 0.92127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.54 9.36 37.16 0.35 -3.19 16 2 C 0.26 6.79 2.43 -69.08 -0.17 6.62 16 3 H 0.06 1.72 7.52 -51.93 -0.39 1.33 16 4 C -0.54 -14.54 8.66 -34.44 -0.30 -14.84 16 5 H 0.06 1.64 7.74 -52.48 -0.41 1.24 16 6 C 0.07 1.89 5.17 -17.82 -0.09 1.80 16 7 N -0.88 -25.12 12.16 55.43 0.67 -24.45 16 8 Si 0.90 20.89 29.55 -169.99 -5.02 15.87 16 9 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 10 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 11 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 12 N -0.68 -15.48 5.06 -56.01 -0.28 -15.76 16 13 C 0.58 12.67 7.78 -12.53 -0.10 12.57 16 14 O -0.55 -12.93 14.23 5.26 0.07 -12.86 16 15 C -0.05 -0.89 6.99 -83.02 -0.58 -1.47 16 16 N -0.46 -7.44 11.06 -11.48 -0.13 -7.57 16 17 C 0.17 2.00 13.19 51.96 0.69 2.69 16 18 O -0.20 -2.68 10.73 6.43 0.07 -2.62 16 19 C 0.02 0.25 6.20 -35.08 -0.22 0.03 16 20 C 0.16 2.31 3.77 -27.16 -0.10 2.21 16 21 H 0.15 2.51 5.84 -51.93 -0.30 2.20 16 22 C -0.15 -1.67 6.55 -24.70 -0.16 -1.83 16 23 C -0.15 -1.35 7.16 -24.40 -0.17 -1.52 16 24 C 0.05 0.46 7.78 38.18 0.30 0.75 16 25 O -0.37 -5.25 11.00 -35.30 -0.39 -5.64 16 26 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.07 1.99 6.83 -51.93 -0.35 1.63 16 29 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 30 H 0.40 8.42 8.25 -40.82 -0.34 8.08 16 31 H 0.25 1.51 8.06 -52.48 -0.42 1.08 16 32 H 0.08 0.85 7.84 -51.93 -0.41 0.44 16 33 H 0.10 1.13 8.14 -51.93 -0.42 0.71 16 34 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 LS Contribution 317.52 15.07 4.78 4.78 Total: -1.00 -32.26 317.52 -5.50 -37.76 By element: Atomic # 1 Polarization: 11.38 SS G_CDS: -4.72 Total: 6.66 kcal Atomic # 6 Polarization: 4.38 SS G_CDS: -0.56 Total: 3.82 kcal Atomic # 7 Polarization: -48.04 SS G_CDS: 0.26 Total: -47.78 kcal Atomic # 8 Polarization: -20.87 SS G_CDS: -0.24 Total: -21.11 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -32.26 -5.50 -37.76 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332430230.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.438 kcal (2) G-P(sol) polarization free energy of solvation -32.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.756 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds